Wall clock time and date at job start Sun Mar 29 2020 21:44:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31746 * 1 3 3 Si 1.86795 * 120.00211 * 2 1 4 4 H 1.48491 * 109.47215 * 270.27198 * 3 2 1 5 5 H 1.48500 * 109.47225 * 30.27748 * 3 2 1 6 6 H 1.48507 * 109.47015 * 150.27354 * 3 2 1 7 7 C 1.38525 * 119.99776 * 180.27229 * 2 1 3 8 8 H 1.08000 * 119.99481 * 359.72761 * 7 2 1 9 9 S 1.76192 * 120.00082 * 179.72724 * 7 2 1 10 10 C 1.76203 * 100.00070 * 180.02562 * 9 7 2 11 11 C 1.34632 * 125.25534 * 180.02562 * 10 9 7 12 12 C 1.38132 * 114.70418 * 179.97438 * 11 10 9 13 13 C 1.33573 * 115.03394 * 359.97438 * 12 11 10 14 14 S 1.75862 * 109.75077 * 359.73627 * 13 12 11 15 15 H 0.97000 * 119.99986 * 359.72921 * 1 2 3 16 16 H 1.08001 * 122.64861 * 359.97210 * 11 10 9 17 17 H 1.07998 * 122.48438 * 180.02562 * 12 11 10 18 18 H 1.07992 * 125.12703 * 179.97438 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3175 0.0000 0.0000 3 14 2.2515 1.6177 0.0000 4 1 2.4933 2.0496 -1.4000 5 1 1.4519 2.6509 0.7059 6 1 3.5520 1.4383 0.6943 7 6 2.0100 -1.1997 -0.0057 8 1 1.4699 -2.1349 -0.0057 9 16 3.7719 -1.1997 -0.0130 10 6 4.0778 -2.9350 -0.0191 11 6 5.2954 -3.5094 -0.0253 12 6 5.2821 -4.8907 -0.0287 13 6 4.0665 -5.4442 -0.0248 14 16 2.8398 -4.1842 -0.0087 15 1 -0.4850 0.8400 0.0040 16 1 6.2104 -2.9356 -0.0274 17 1 6.1875 -5.4795 -0.0332 18 1 3.8670 -6.5055 -0.0270 RHF calculation, no. of doubly occupied orbitals= 27 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020078165.mol2 18 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:17 Heat of formation + Delta-G solvation = 19.761167 kcal Electronic energy + Delta-G solvation = -7142.561468 eV Core-core repulsion = 5584.582918 eV Total energy + Delta-G solvation = -1557.978550 eV No. of doubly occupied orbitals = 27 Molecular weight (most abundant/longest-lived isotopes) = 185.987 amu Computer time = 0.07 seconds Orbital eigenvalues (eV) -36.71110 -32.74495 -28.73684 -26.02981 -23.38664 -19.44130 -17.60909 -16.97728 -15.26977 -14.80177 -13.70265 -13.00101 -12.52767 -12.17691 -11.92200 -11.37523 -11.26435 -10.88586 -10.25635 -9.97435 -9.49130 -8.92780 -8.80002 -7.77570 -6.82379 -6.55166 -4.29987 1.67103 2.30463 2.61225 2.91441 3.11294 3.22035 3.38171 3.40998 4.04816 4.52987 4.84968 5.66563 5.95105 6.21574 6.69852 6.93477 7.15362 7.68148 8.24224 8.85579 10.52960 Molecular weight = 185.99amu Principal moments of inertia in cm(-1) A = 0.079039 B = 0.013894 C = 0.011866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 354.169744 B = 2014.742235 C = 2359.065105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.101 3.899 3 Si 0.854 3.146 4 H -0.262 1.262 5 H -0.266 1.266 6 H -0.237 1.237 7 C -0.542 4.542 8 H 0.106 0.894 9 S 0.018 5.982 10 C -0.152 4.152 11 C -0.189 4.189 12 C -0.109 4.109 13 C -0.275 4.275 14 S 0.131 5.869 15 H 0.276 0.724 16 H 0.130 0.870 17 H 0.125 0.875 18 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.866 -4.409 0.055 8.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.110 4.110 3 Si 0.677 3.323 4 H -0.186 1.186 5 H -0.191 1.191 6 H -0.161 1.161 7 C -0.690 4.690 8 H 0.124 0.876 9 S 0.266 5.734 10 C -0.384 4.384 11 C -0.228 4.228 12 C -0.141 4.141 13 C -0.415 4.415 14 S 0.389 5.611 15 H 0.086 0.914 16 H 0.148 0.852 17 H 0.143 0.857 18 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 5.772 -3.169 0.070 6.585 hybrid contribution 0.825 -0.369 -0.030 0.905 sum 6.598 -3.538 0.040 7.486 Atomic orbital electron populations 1.69973 1.05817 1.28302 1.45332 1.24742 0.94694 0.98939 0.92636 0.86793 0.81796 0.83367 0.80299 1.18637 1.19058 1.16088 1.22573 0.87896 0.98537 1.60009 0.87641 1.82681 1.10346 0.94238 1.86158 1.26726 0.99134 1.03479 1.09047 1.19668 0.96285 0.93963 1.12928 1.19857 0.97227 0.94065 1.02987 1.25541 0.97195 1.02567 1.16201 1.84530 1.08613 0.94355 1.73574 0.91355 0.85226 0.85683 0.83241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.76 13.97 55.48 0.78 -23.99 13 2 C 0.10 2.80 5.49 -17.48 -0.10 2.70 13 3 Si 0.85 19.87 27.73 -169.99 -4.71 15.16 13 4 H -0.26 -5.99 7.11 56.52 0.40 -5.59 13 5 H -0.27 -5.98 7.11 56.52 0.40 -5.57 13 6 H -0.24 -5.33 6.73 56.52 0.38 -4.95 13 7 C -0.54 -15.07 9.79 30.84 0.30 -14.77 13 8 H 0.11 3.09 6.15 -52.49 -0.32 2.77 13 9 S 0.02 0.43 19.77 -107.50 -2.13 -1.69 13 10 C -0.15 -3.37 6.64 29.46 0.20 -3.17 13 11 C -0.19 -3.65 10.14 -40.90 -0.41 -4.06 13 12 C -0.11 -1.86 10.17 -41.25 -0.42 -2.28 13 13 C -0.27 -4.76 11.22 29.10 0.33 -4.44 13 14 S 0.13 2.74 21.03 -107.50 -2.26 0.48 13 15 H 0.28 7.30 8.32 -40.82 -0.34 6.96 13 16 H 0.13 2.26 8.06 -52.49 -0.42 1.83 13 17 H 0.13 1.72 8.06 -52.49 -0.42 1.30 13 18 H 0.15 2.13 8.06 -52.49 -0.42 1.71 13 LS Contribution 195.55 15.07 2.95 2.95 Total: -1.00 -28.42 195.55 -6.23 -34.65 By element: Atomic # 1 Polarization: -0.79 SS G_CDS: -0.75 Total: -1.54 kcal Atomic # 6 Polarization: -25.91 SS G_CDS: -0.11 Total: -26.02 kcal Atomic # 7 Polarization: -24.76 SS G_CDS: 0.78 Total: -23.99 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -4.71 Total: 15.16 kcal Atomic # 16 Polarization: 3.17 SS G_CDS: -4.39 Total: -1.21 kcal Total LS contribution 2.95 Total: 2.95 kcal Total: -28.42 -6.23 -34.65 kcal The number of atoms in the molecule is 18 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020078165.mol2 18 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.416 kcal (2) G-P(sol) polarization free energy of solvation -28.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.655 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.07 seconds