Wall clock time and date at job start Sun Mar 29 2020 21:45:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86805 * 119.99858 * 2 1 4 4 H 1.48492 * 109.46900 * 269.99352 * 3 2 1 5 5 H 1.48503 * 109.47147 * 29.99509 * 3 2 1 6 6 H 1.48496 * 109.46905 * 149.99607 * 3 2 1 7 7 C 1.38801 * 120.00056 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99906 * 180.02562 * 7 2 1 9 9 S 1.76194 * 119.99795 * 0.02562 * 7 2 1 10 10 C 1.81003 * 99.99967 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.46918 * 64.99984 * 10 9 7 12 12 C 1.52999 * 109.47317 * 179.97438 * 11 10 9 13 13 C 1.53005 * 109.47159 * 300.00546 * 12 11 10 14 14 C 1.52997 * 109.47452 * 59.99536 * 13 12 11 15 15 C 1.53000 * 109.47207 * 184.99835 * 10 9 7 16 16 H 0.97002 * 119.99922 * 0.02562 * 1 2 3 17 17 H 1.09002 * 109.46996 * 305.00148 * 10 9 7 18 18 H 1.08996 * 109.47853 * 300.00232 * 11 10 9 19 19 H 1.09002 * 109.47153 * 60.00260 * 11 10 9 20 20 H 1.09000 * 109.47486 * 180.02562 * 12 11 10 21 21 H 1.09002 * 109.46716 * 60.00091 * 12 11 10 22 22 H 1.09002 * 109.46935 * 299.99411 * 13 12 11 23 23 H 1.09001 * 109.46812 * 179.97438 * 13 12 11 24 24 H 1.08993 * 109.47194 * 179.97438 * 14 13 12 25 25 H 1.09002 * 109.46695 * 59.99734 * 14 13 12 26 26 H 1.08992 * 109.47399 * 300.00058 * 15 10 9 27 27 H 1.09004 * 109.46724 * 60.00544 * 15 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4979 2.0463 -1.4000 5 1 1.4476 2.6528 0.6999 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0010 9 16 1.1293 -2.7279 0.0005 10 6 2.5158 -3.8914 0.0005 11 6 3.2983 -3.7522 1.3079 12 6 4.4700 -4.7361 1.3082 13 6 3.9365 -6.1646 1.1827 14 6 3.1540 -6.3038 -0.1246 15 6 1.9828 -5.3200 -0.1251 16 1 -0.4850 0.8401 -0.0004 17 1 3.1731 -3.6734 -0.8413 18 1 3.6781 -2.7345 1.3976 19 1 2.6411 -3.9702 2.1497 20 1 5.0272 -4.6373 2.2398 21 1 5.1274 -4.5185 0.4664 22 1 3.2791 -6.3822 2.0246 23 1 4.7713 -6.8655 1.1825 24 1 2.7743 -7.3215 -0.2142 25 1 3.8114 -6.0862 -0.9664 26 1 1.3257 -5.5380 0.7166 27 1 1.4254 -5.4192 -1.0566 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020160545.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:26 Heat of formation + Delta-G solvation = -56.821199 kcal Electronic energy + Delta-G solvation = -9603.380350 eV Core-core repulsion = 7870.994257 eV Total energy + Delta-G solvation = -1732.386093 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 186.077 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.05247 -34.60106 -31.66582 -31.57870 -27.70000 -23.47095 -23.38469 -20.71425 -19.55580 -16.91916 -16.80970 -15.79616 -15.17969 -15.04939 -14.83625 -13.85516 -13.58928 -13.20348 -12.99257 -12.90142 -12.60829 -12.29354 -11.99199 -11.92612 -11.37980 -11.23996 -11.06259 -10.83201 -10.07823 -8.65750 -8.36074 -6.11119 1.30600 1.37816 1.47311 1.78604 2.28645 2.97907 3.33953 3.83410 3.90511 4.15604 4.34400 4.40075 4.56314 4.63811 4.66570 4.79329 4.97199 5.16295 5.23442 5.28273 5.31150 5.36797 5.40457 5.49795 5.59338 6.20001 7.06369 8.73521 Molecular weight = 186.08amu Principal moments of inertia in cm(-1) A = 0.068059 B = 0.011179 C = 0.010027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 411.311522 B = 2504.161955 C = 2791.840866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.013 3.987 3 Si 0.991 3.009 4 H -0.268 1.268 5 H -0.274 1.274 6 H -0.263 1.263 7 C -0.525 4.525 8 H 0.071 0.929 9 S -0.209 6.209 10 C -0.059 4.059 11 C -0.101 4.101 12 C -0.112 4.112 13 C -0.114 4.114 14 C -0.108 4.108 15 C -0.092 4.092 16 H 0.270 0.730 17 H 0.056 0.944 18 H 0.038 0.962 19 H 0.056 0.944 20 H 0.072 0.928 21 H 0.058 0.942 22 H 0.062 0.938 23 H 0.084 0.916 24 H 0.084 0.916 25 H 0.062 0.938 26 H 0.060 0.940 27 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.175 -9.449 1.547 12.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.192 4.192 3 Si 0.814 3.186 4 H -0.193 1.193 5 H -0.199 1.199 6 H -0.188 1.188 7 C -0.673 4.673 8 H 0.089 0.911 9 S 0.023 5.977 10 C -0.189 4.189 11 C -0.140 4.140 12 C -0.152 4.152 13 C -0.151 4.151 14 C -0.147 4.147 15 C -0.131 4.131 16 H 0.079 0.921 17 H 0.074 0.926 18 H 0.057 0.943 19 H 0.075 0.925 20 H 0.091 0.909 21 H 0.077 0.923 22 H 0.081 0.919 23 H 0.102 0.898 24 H 0.103 0.897 25 H 0.081 0.919 26 H 0.079 0.921 27 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 6.841 -9.508 1.530 11.813 hybrid contribution 1.282 1.555 -0.107 2.018 sum 8.123 -7.953 1.423 11.457 Atomic orbital electron populations 1.70167 1.07663 1.28359 1.48471 1.26057 0.96014 1.03045 0.94048 0.85051 0.78201 0.76600 0.78790 1.19343 1.19938 1.18769 1.22957 0.94474 0.91764 1.58099 0.91108 1.84613 1.14748 1.01527 1.96799 1.23062 0.98298 0.97681 0.99815 1.21701 0.97360 0.98900 0.96041 1.21578 0.96463 0.95105 1.02007 1.21534 1.00117 0.95874 0.97598 1.21522 0.96123 0.98707 0.98341 1.21316 0.98538 0.91471 1.01784 0.92111 0.92577 0.94326 0.92547 0.90899 0.92282 0.91885 0.89783 0.89749 0.91905 0.92099 0.92298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.03 13.22 21.65 0.29 -55.74 15 2 C 0.01 0.74 5.49 84.86 0.47 1.21 15 3 Si 0.99 44.83 29.55 68.60 2.03 46.86 15 4 H -0.27 -11.66 7.11 99.48 0.71 -10.95 15 5 H -0.27 -11.94 7.11 99.48 0.71 -11.24 15 6 H -0.26 -11.41 7.11 99.48 0.71 -10.70 15 7 C -0.53 -30.86 8.86 67.95 0.60 -30.26 15 8 H 0.07 4.04 7.13 -2.91 -0.02 4.02 15 9 S -0.21 -11.42 20.89 -56.49 -1.18 -12.60 15 10 C -0.06 -2.46 2.47 30.59 0.08 -2.39 15 11 C -0.10 -3.80 5.07 30.59 0.16 -3.64 15 12 C -0.11 -3.10 5.92 30.60 0.18 -2.92 15 13 C -0.11 -2.61 5.92 30.60 0.18 -2.43 15 14 C -0.11 -2.65 5.92 30.58 0.18 -2.47 15 15 C -0.09 -3.07 5.20 30.58 0.16 -2.91 15 16 H 0.27 15.43 8.31 -92.71 -0.77 14.66 15 17 H 0.06 2.41 8.14 -2.39 -0.02 2.39 15 18 H 0.04 1.65 6.93 -2.39 -0.02 1.63 15 19 H 0.06 2.17 8.14 -2.39 -0.02 2.15 15 20 H 0.07 1.77 8.14 -2.39 -0.02 1.76 15 21 H 0.06 1.61 8.14 -2.39 -0.02 1.59 15 22 H 0.06 1.44 8.14 -2.39 -0.02 1.42 15 23 H 0.08 1.50 8.14 -2.39 -0.02 1.48 15 24 H 0.08 1.68 8.14 -2.39 -0.02 1.66 15 25 H 0.06 1.51 8.14 -2.39 -0.02 1.50 15 26 H 0.06 2.05 8.14 -2.39 -0.02 2.03 15 27 H 0.06 1.99 8.14 -2.39 -0.02 1.97 15 Total: -1.00 -66.19 233.64 4.25 -61.94 By element: Atomic # 1 Polarization: 4.24 SS G_CDS: 1.12 Total: 5.36 kcal Atomic # 6 Polarization: -47.82 SS G_CDS: 2.00 Total: -45.82 kcal Atomic # 7 Polarization: -56.03 SS G_CDS: 0.29 Total: -55.74 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal Atomic # 16 Polarization: -11.42 SS G_CDS: -1.18 Total: -12.60 kcal Total: -66.19 4.25 -61.94 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020160545.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.115 kcal (2) G-P(sol) polarization free energy of solvation -66.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds