Wall clock time and date at job start Sun Mar 29 2020 21:28:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.52997 * 109.47164 * 240.00295 * 2 1 3 5 5 C 1.52996 * 109.46975 * 179.97438 * 4 2 1 6 6 C 1.53005 * 109.47245 * 60.00405 * 5 4 2 7 7 C 1.53000 * 109.46632 * 300.00027 * 6 5 4 8 8 H 1.09001 * 109.47194 * 299.99548 * 7 6 5 9 9 O 1.42898 * 109.46998 * 180.02562 * 7 6 5 10 10 C 1.34926 * 117.00524 * 89.99398 * 9 7 6 11 11 H 1.07996 * 119.99537 * 0.02562 * 10 9 7 12 12 C 1.38632 * 119.99990 * 179.97438 * 10 9 7 13 13 N 1.31578 * 120.00182 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 119.99858 * 180.02562 * 12 10 9 15 15 H 1.48504 * 109.47263 * 90.00305 * 14 12 10 16 16 H 1.48494 * 109.47405 * 210.00500 * 14 12 10 17 17 H 1.48505 * 109.47471 * 330.00636 * 14 12 10 18 18 C 1.52996 * 109.47518 * 59.99681 * 7 6 5 19 19 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 20 20 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 21 21 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 22 22 H 1.09001 * 109.47375 * 300.00034 * 4 2 1 23 23 H 1.09000 * 109.47140 * 60.00051 * 4 2 1 24 24 H 1.09004 * 109.47108 * 180.02562 * 5 4 2 25 25 H 1.09001 * 109.47367 * 299.99815 * 5 4 2 26 26 H 1.08992 * 109.46876 * 59.99547 * 6 5 4 27 27 H 1.08992 * 109.47199 * 180.02562 * 6 5 4 28 28 H 0.97003 * 119.99815 * 179.97438 * 13 12 10 29 29 H 1.08996 * 109.47452 * 180.02562 * 18 7 6 30 30 H 1.09001 * 109.46997 * 59.99746 * 18 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 3.5700 -0.7206 -1.2495 6 6 4.0806 -1.4416 -0.0003 7 6 3.5705 -0.7205 1.2489 8 1 3.9335 0.3073 1.2488 9 8 4.0478 -1.3935 2.4157 10 6 5.2335 -0.9873 2.9153 11 1 5.7760 -0.1866 2.4348 12 6 5.7547 -1.5971 4.0459 13 7 5.0934 -2.5723 4.6315 14 14 7.3959 -1.0342 4.7380 15 1 7.1701 0.0481 5.7294 16 1 8.0727 -2.1784 5.3998 17 1 8.2498 -0.5248 3.6350 18 6 2.0405 -0.7209 1.2492 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3633 0.5138 0.8899 21 1 -0.3633 0.5139 -0.8900 22 1 1.6767 -1.7488 -1.2493 23 1 1.6767 -0.2073 -2.1392 24 1 3.9334 -1.2340 -2.1398 25 1 3.9330 0.3072 -1.2497 26 1 3.7176 -2.4693 -0.0002 27 1 5.1705 -1.4408 -0.0003 28 1 5.4584 -2.9992 5.4224 29 1 1.6771 -0.2068 2.1389 30 1 1.6775 -1.7487 1.2493 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020515164.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:28:48 Heat of formation + Delta-G solvation = -88.526600 kcal Electronic energy + Delta-G solvation = -11520.527652 eV Core-core repulsion = 9507.158411 eV Total energy + Delta-G solvation = -2013.369240 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.99206 -37.40921 -33.96541 -33.06121 -30.63961 -27.21116 -26.65463 -23.18261 -22.06990 -20.75272 -19.51444 -17.44136 -16.16909 -15.91204 -15.57329 -15.27395 -14.84027 -14.24136 -13.93211 -13.38850 -13.20738 -13.12965 -12.73215 -12.62873 -12.25374 -12.09456 -11.85549 -11.71566 -11.48165 -11.16261 -11.09750 -10.82184 -10.07785 -8.17076 -5.85566 1.37372 1.44335 1.53375 2.32577 3.15235 3.55258 3.82625 3.93108 4.21883 4.27037 4.38042 4.47437 4.58642 4.65772 4.75465 4.82616 4.94334 5.04639 5.08781 5.13954 5.20451 5.26718 5.34386 5.38586 5.47022 5.51876 5.61884 6.22238 7.25923 8.10363 9.08195 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.068100 B = 0.009890 C = 0.009247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 411.059190 B = 2830.352774 C = 3027.346509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.084 4.084 3 H 0.071 0.929 4 C -0.109 4.109 5 C -0.109 4.109 6 C -0.132 4.132 7 C 0.086 3.914 8 H 0.031 0.969 9 O -0.335 6.335 10 C -0.370 4.370 11 H 0.068 0.932 12 C -0.047 4.047 13 N -0.942 5.942 14 Si 1.004 2.996 15 H -0.270 1.270 16 H -0.278 1.278 17 H -0.260 1.260 18 C -0.102 4.102 19 H 0.053 0.947 20 H 0.052 0.948 21 H 0.076 0.924 22 H 0.060 0.940 23 H 0.089 0.911 24 H 0.078 0.922 25 H 0.064 0.936 26 H 0.048 0.952 27 H 0.040 0.960 28 H 0.260 0.740 29 H 0.046 0.954 30 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.060 5.803 -11.184 13.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.103 4.103 3 H 0.090 0.910 4 C -0.146 4.146 5 C -0.146 4.146 6 C -0.170 4.170 7 C 0.028 3.972 8 H 0.049 0.951 9 O -0.251 6.251 10 C -0.449 4.449 11 H 0.086 0.914 12 C -0.239 4.239 13 N -0.587 5.587 14 Si 0.826 3.174 15 H -0.195 1.195 16 H -0.203 1.203 17 H -0.184 1.184 18 C -0.140 4.140 19 H 0.073 0.927 20 H 0.071 0.929 21 H 0.095 0.905 22 H 0.079 0.921 23 H 0.108 0.892 24 H 0.096 0.904 25 H 0.083 0.917 26 H 0.067 0.933 27 H 0.059 0.941 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -5.162 5.559 -10.992 13.356 hybrid contribution 0.926 0.043 0.685 1.152 sum -4.237 5.602 -10.307 12.473 Atomic orbital electron populations 1.21778 0.93440 1.02116 1.02401 1.21100 0.96732 0.99145 0.93322 0.91048 1.21602 0.94490 1.00865 0.97628 1.21492 0.96579 1.00418 0.96153 1.21978 0.99584 0.99669 0.95805 1.22117 0.94608 0.94109 0.86380 0.95124 1.85596 1.37104 1.60297 1.42059 1.21333 0.96400 1.17123 1.10020 0.91429 1.26228 1.03437 0.97190 0.97064 1.70201 1.40660 1.26213 1.21622 0.84783 0.76422 0.77673 0.78535 1.19529 1.20286 1.18374 1.21591 0.93291 1.00555 0.98581 0.92741 0.92920 0.90488 0.92149 0.89240 0.90367 0.91745 0.93340 0.94078 0.93165 0.93480 0.93009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.12 9.20 71.98 0.66 -2.46 16 2 C -0.08 -2.34 2.72 -10.79 -0.03 -2.37 16 3 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 4 C -0.11 -2.68 5.20 30.59 0.16 -2.52 16 5 C -0.11 -3.09 5.92 30.59 0.18 -2.91 16 6 C -0.13 -5.28 5.54 30.60 0.17 -5.11 16 7 C 0.09 3.98 2.65 30.59 0.08 4.06 16 8 H 0.03 1.41 7.80 -2.39 -0.02 1.40 16 9 O -0.33 -20.43 9.43 -81.95 -0.77 -21.20 16 10 C -0.37 -22.75 9.77 67.91 0.66 -22.09 16 11 H 0.07 3.90 7.64 -2.91 -0.02 3.88 16 12 C -0.05 -2.86 5.49 84.82 0.47 -2.39 16 13 N -0.94 -61.98 13.67 21.61 0.30 -61.69 16 14 Si 1.00 46.53 29.55 68.60 2.03 48.56 16 15 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 16 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 17 H -0.26 -11.21 7.11 99.48 0.71 -10.51 16 18 C -0.10 -3.96 4.86 30.59 0.15 -3.82 16 19 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 20 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 21 H 0.08 1.33 8.14 -2.39 -0.02 1.32 16 22 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 23 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 24 H 0.08 1.89 8.14 -2.38 -0.02 1.87 16 25 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 26 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 27 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 28 H 0.26 15.86 8.31 -92.71 -0.77 15.09 16 29 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 Total: -1.00 -72.19 246.78 5.13 -67.06 By element: Atomic # 1 Polarization: 5.79 SS G_CDS: 1.08 Total: 6.87 kcal Atomic # 6 Polarization: -42.10 SS G_CDS: 2.50 Total: -39.60 kcal Atomic # 7 Polarization: -61.98 SS G_CDS: 0.30 Total: -61.69 kcal Atomic # 8 Polarization: -20.43 SS G_CDS: -0.77 Total: -21.20 kcal Atomic # 14 Polarization: 46.53 SS G_CDS: 2.03 Total: 48.56 kcal Total: -72.19 5.13 -67.06 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020515164.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.463 kcal (2) G-P(sol) polarization free energy of solvation -72.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds