Wall clock time and date at job start Sun Mar 29 2020 21:43:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36939 * 119.99685 * 2 1 4 4 H 1.07998 * 120.00016 * 203.30356 * 3 2 1 5 5 C 1.38813 * 120.00183 * 23.30699 * 3 2 1 6 6 N 1.31619 * 119.99755 * 11.62744 * 5 3 2 7 7 Si 1.86801 * 120.00098 * 191.63551 * 5 3 2 8 8 H 1.48496 * 109.47252 * 89.99394 * 7 5 3 9 9 H 1.48498 * 109.47078 * 209.99761 * 7 5 3 10 10 H 1.48501 * 109.46794 * 329.99575 * 7 5 3 11 11 C 1.46501 * 120.00205 * 179.97438 * 2 1 3 12 12 C 1.53179 * 109.54343 * 300.44550 * 11 2 1 13 13 C 1.53098 * 109.16030 * 176.84541 * 12 11 2 14 14 O 1.42898 * 109.41619 * 302.39542 * 13 12 11 15 15 C 1.42901 * 114.10025 * 61.15550 * 14 13 12 16 16 C 1.53093 * 109.41818 * 298.84176 * 15 14 13 17 17 H 1.09000 * 109.46987 * 274.06226 * 1 2 3 18 18 H 1.08999 * 109.47131 * 34.06597 * 1 2 3 19 19 H 1.09005 * 109.46716 * 154.06357 * 1 2 3 20 20 H 0.97000 * 119.99505 * 180.02562 * 6 5 3 21 21 H 1.09004 * 109.61514 * 180.22186 * 11 2 1 22 22 H 1.09000 * 109.52234 * 296.75190 * 12 11 2 23 23 H 1.08998 * 109.52042 * 56.94490 * 12 11 2 24 24 H 1.08994 * 109.47713 * 182.40756 * 13 12 11 25 25 H 1.09000 * 109.47792 * 62.37385 * 13 12 11 26 26 H 1.09003 * 109.47851 * 178.86242 * 15 14 13 27 27 H 1.09001 * 109.49011 * 58.83566 * 15 14 13 28 28 H 1.09004 * 109.52162 * 297.70777 * 16 15 14 29 29 H 1.08994 * 109.52242 * 177.51290 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1635 1.2242 -0.3700 5 6 1.5405 2.3391 0.4756 6 7 0.4030 2.2592 1.1330 7 14 2.3350 4.0041 0.1826 8 1 1.8413 4.5695 -1.0987 9 1 1.9856 4.9222 1.2962 10 1 3.8099 3.8440 0.1172 11 6 2.1976 -1.2687 0.0006 12 6 1.8203 -2.0777 1.2454 13 6 2.5296 -3.4336 1.1975 14 8 2.1671 -4.1171 -0.0039 15 6 2.5377 -3.4299 -1.2007 16 6 1.8288 -2.0738 -1.2493 17 1 -0.3633 0.0728 1.0251 18 1 -0.3633 0.8513 -0.5756 19 1 -0.3633 -0.9242 -0.4495 20 1 -0.0228 3.0650 1.4650 21 1 3.2697 -1.0722 0.0045 22 1 2.1297 -1.5361 2.1393 23 1 0.7415 -2.2315 1.2667 24 1 2.2314 -4.0304 2.0594 25 1 3.6086 -3.2803 1.2170 26 1 2.2452 -4.0241 -2.0665 27 1 3.6168 -3.2766 -1.2128 28 1 0.7500 -2.2276 -1.2783 29 1 2.1442 -1.5296 -2.1394 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036321100.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:20 Heat of formation + Delta-G solvation = -31.183634 kcal Electronic energy + Delta-G solvation = -11905.474529 eV Core-core repulsion = 9829.165956 eV Total energy + Delta-G solvation = -2076.308574 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.84795 -35.57610 -32.34418 -30.56825 -29.71514 -25.97221 -24.45062 -22.94820 -21.60937 -18.90373 -16.75275 -15.80348 -15.56881 -14.77526 -14.26714 -13.89317 -13.35381 -12.85303 -12.48544 -12.24384 -11.60285 -10.97035 -10.90422 -10.74491 -10.67825 -10.32499 -10.17907 -10.07474 -9.86586 -9.48733 -9.09812 -8.51423 -6.71141 -5.69542 -3.16327 3.38948 3.44899 3.46381 4.25958 4.50420 5.34827 5.34931 5.47883 5.50804 5.56810 5.74830 5.81606 6.02001 6.12677 6.22122 6.36816 6.50872 6.64598 6.81595 6.99054 7.05931 7.43197 7.58634 7.77000 7.82980 8.43257 9.26881 9.90373 10.40713 11.35079 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.070465 B = 0.011031 C = 0.010765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 397.263975 B = 2537.649399 C = 2600.460989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.164 3.836 2 N -0.596 5.596 3 C -0.255 4.255 4 H 0.067 0.933 5 C 0.001 3.999 6 N -0.908 5.908 7 Si 0.905 3.095 8 H -0.288 1.288 9 H -0.291 1.291 10 H -0.280 1.280 11 C 0.177 3.823 12 C -0.167 4.167 13 C 0.064 3.936 14 O -0.391 6.391 15 C 0.065 3.935 16 C -0.169 4.169 17 H 0.027 0.973 18 H 0.041 0.959 19 H -0.001 1.001 20 H 0.252 0.748 21 H 0.060 0.940 22 H 0.070 0.930 23 H 0.064 0.936 24 H 0.084 0.916 25 H 0.044 0.956 26 H 0.084 0.916 27 H 0.044 0.956 28 H 0.066 0.934 29 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.189 -8.288 -2.173 9.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.318 5.318 3 C -0.384 4.384 4 H 0.085 0.915 5 C -0.197 4.197 6 N -0.553 5.553 7 Si 0.735 3.265 8 H -0.215 1.215 9 H -0.217 1.217 10 H -0.205 1.205 11 C 0.069 3.931 12 C -0.207 4.207 13 C -0.013 4.013 14 O -0.310 6.310 15 C -0.012 4.012 16 C -0.209 4.209 17 H 0.046 0.954 18 H 0.060 0.940 19 H 0.017 0.983 20 H 0.062 0.938 21 H 0.078 0.922 22 H 0.088 0.912 23 H 0.083 0.917 24 H 0.102 0.898 25 H 0.062 0.938 26 H 0.102 0.898 27 H 0.062 0.938 28 H 0.085 0.915 29 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 2.981 -8.288 -2.097 9.054 hybrid contribution 0.417 1.322 -0.043 1.387 sum 3.398 -6.966 -2.140 8.040 Atomic orbital electron populations 1.20744 0.82751 0.95470 0.99131 1.43951 1.01825 1.00169 1.85827 1.19245 0.98465 0.85673 1.35061 0.91514 1.25048 0.97878 0.98544 0.98279 1.70075 1.18758 1.27136 1.39347 0.86240 0.78764 0.84136 0.77310 1.21525 1.21747 1.20535 1.20332 0.95772 0.86165 0.90832 1.22762 1.01241 0.95261 1.01402 1.22597 0.98003 0.93873 0.86873 1.87831 1.82230 1.46870 1.14108 1.22548 0.97911 0.93586 0.87157 1.22746 1.01447 0.95635 1.01052 0.95424 0.94020 0.98264 0.93799 0.92160 0.91150 0.91717 0.89820 0.93782 0.89820 0.93773 0.91509 0.91379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.16 7.94 59.85 0.48 4.63 15 2 N -0.60 -15.29 2.82 -173.27 -0.49 -15.78 15 3 C -0.25 -7.12 9.59 -15.06 -0.14 -7.26 15 4 H 0.07 1.82 7.82 -52.49 -0.41 1.41 15 5 C 0.00 0.02 5.12 -17.43 -0.09 -0.07 15 6 N -0.91 -26.89 10.66 55.49 0.59 -26.30 15 7 Si 0.91 22.08 29.57 -169.99 -5.03 17.05 15 8 H -0.29 -7.01 7.11 56.52 0.40 -6.61 15 9 H -0.29 -7.15 7.11 56.52 0.40 -6.75 15 10 H -0.28 -6.65 7.11 56.52 0.40 -6.25 15 11 C 0.18 3.74 2.68 -67.74 -0.18 3.56 15 12 C -0.17 -3.20 5.46 -26.59 -0.15 -3.35 15 13 C 0.06 1.01 6.84 37.21 0.25 1.27 15 14 O -0.39 -6.59 10.77 -35.23 -0.38 -6.97 15 15 C 0.07 1.00 6.84 37.21 0.25 1.26 15 16 C -0.17 -3.07 5.46 -26.59 -0.15 -3.22 15 17 H 0.03 0.76 7.40 -51.93 -0.38 0.37 15 18 H 0.04 1.13 7.25 -51.93 -0.38 0.76 15 19 H 0.00 -0.02 6.39 -51.93 -0.33 -0.36 15 20 H 0.25 7.22 8.31 -40.82 -0.34 6.88 15 21 H 0.06 1.28 7.88 -51.93 -0.41 0.87 15 22 H 0.07 1.42 8.14 -51.93 -0.42 1.00 15 23 H 0.06 1.31 7.57 -51.93 -0.39 0.92 15 24 H 0.08 1.16 8.14 -51.93 -0.42 0.74 15 25 H 0.04 0.65 8.14 -51.93 -0.42 0.22 15 26 H 0.08 1.10 8.14 -51.93 -0.42 0.68 15 27 H 0.04 0.63 8.14 -51.93 -0.42 0.20 15 28 H 0.07 1.27 6.56 -51.93 -0.34 0.93 15 29 H 0.07 1.23 8.14 -51.93 -0.42 0.81 15 LS Contribution 233.11 15.07 3.51 3.51 Total: -1.00 -30.01 233.11 -5.83 -35.84 By element: Atomic # 1 Polarization: 0.14 SS G_CDS: -4.32 Total: -4.18 kcal Atomic # 6 Polarization: -3.46 SS G_CDS: 0.28 Total: -3.18 kcal Atomic # 7 Polarization: -42.19 SS G_CDS: 0.10 Total: -42.08 kcal Atomic # 8 Polarization: -6.59 SS G_CDS: -0.38 Total: -6.97 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.03 Total: 17.05 kcal Total LS contribution 3.51 Total: 3.51 kcal Total: -30.01 -5.83 -35.84 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036321100.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.660 kcal (2) G-P(sol) polarization free energy of solvation -30.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds