Wall clock time and date at job start Sun Mar 29 2020 21:49:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36936 * 120.00234 * 2 1 4 4 H 1.07998 * 120.00038 * 156.77687 * 3 2 1 5 5 C 1.38807 * 119.99945 * 336.78626 * 3 2 1 6 6 N 1.31625 * 120.00251 * 347.93486 * 5 3 2 7 7 Si 1.86801 * 120.00077 * 167.66389 * 5 3 2 8 8 H 1.48500 * 109.47181 * 89.99722 * 7 5 3 9 9 H 1.48504 * 109.47172 * 209.99646 * 7 5 3 10 10 H 1.48497 * 109.47070 * 329.99490 * 7 5 3 11 11 C 1.46504 * 119.99788 * 180.02562 * 2 1 3 12 12 H 1.09009 * 108.82825 * 178.53017 * 11 2 1 13 13 C 1.52332 * 108.87003 * 59.99697 * 11 2 1 14 14 C 1.54259 * 112.58278 * 239.17825 * 13 11 2 15 15 S 1.83957 * 102.58338 * 24.52994 * 14 13 11 16 16 C 1.54261 * 108.86558 * 296.91697 * 11 2 1 17 17 H 1.08997 * 109.47453 * 92.00440 * 1 2 3 18 18 H 1.09004 * 109.46994 * 212.00049 * 1 2 3 19 19 H 1.08998 * 109.47212 * 331.99940 * 1 2 3 20 20 H 0.96997 * 120.00369 * 179.97438 * 6 5 3 21 21 H 1.08993 * 108.86682 * 359.97438 * 13 11 2 22 22 H 1.09004 * 108.86846 * 118.36435 * 13 11 2 23 23 H 1.09005 * 110.78097 * 142.80393 * 14 13 11 24 24 H 1.09003 * 110.79163 * 266.06228 * 14 13 11 25 25 H 1.09005 * 110.78464 * 214.56765 * 16 11 2 26 26 H 1.08998 * 110.78497 * 338.01763 * 16 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1640 1.2237 0.3688 5 6 1.5400 2.3393 -0.4738 6 7 0.4059 2.2594 -1.1372 7 14 2.3250 4.0058 -0.1636 8 1 3.2485 4.3333 -1.2794 9 1 1.2661 5.0433 -0.0766 10 1 3.0844 3.9654 1.1119 11 6 2.1974 -1.2688 -0.0006 12 1 3.2666 -1.0578 -0.0269 13 6 1.8195 -2.0553 -1.2492 14 6 1.2027 -3.4301 -0.9192 15 16 0.5307 -3.1720 0.7737 16 6 1.8745 -2.0317 1.3007 17 1 -0.3634 -0.0359 -1.0270 18 1 -0.3633 -0.8715 0.5446 19 1 -0.3633 0.9073 0.4825 20 1 -0.0204 3.0655 -1.4679 21 1 1.0993 -1.4755 -1.8264 22 1 2.7132 -2.2061 -1.8548 23 1 0.4037 -3.6737 -1.6196 24 1 1.9668 -4.2075 -0.9209 25 1 2.7435 -2.5916 1.6466 26 1 1.5213 -1.3479 2.0725 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037174885.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:34 Heat of formation + Delta-G solvation = 5.793222 kcal Electronic energy + Delta-G solvation = -10107.351000 eV Core-core repulsion = 8312.254162 eV Total energy + Delta-G solvation = -1795.096839 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 187.073 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -38.67237 -35.08245 -32.34060 -29.90262 -27.97678 -26.12018 -23.95136 -20.47032 -18.90560 -17.46142 -17.21986 -16.03513 -15.49382 -15.04136 -14.85313 -14.15139 -13.64911 -12.94425 -12.84373 -12.73425 -12.68229 -12.44684 -12.35039 -11.96395 -11.82266 -11.57206 -10.78350 -10.60337 -8.92066 -8.43354 -7.79948 -5.30701 1.06741 1.45746 1.47861 1.48950 1.57395 2.50523 3.31314 3.58319 3.81712 4.11645 4.24583 4.36102 4.47462 4.66516 4.75219 4.94085 5.07092 5.23102 5.33337 5.46537 5.64981 5.76580 6.33731 7.15386 7.87205 8.33163 9.21217 Molecular weight = 187.07amu Principal moments of inertia in cm(-1) A = 0.077218 B = 0.011778 C = 0.011590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 362.522142 B = 2376.680861 C = 2415.263423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.176 3.824 2 N -0.606 5.606 3 C -0.266 4.266 4 H 0.075 0.925 5 C -0.055 4.055 6 N -0.939 5.939 7 Si 0.970 3.030 8 H -0.284 1.284 9 H -0.296 1.296 10 H -0.269 1.269 11 C 0.161 3.839 12 H 0.077 0.923 13 C -0.135 4.135 14 C -0.042 4.042 15 S -0.352 6.352 16 C -0.058 4.058 17 H -0.012 1.012 18 H 0.043 0.957 19 H 0.016 0.984 20 H 0.247 0.753 21 H 0.050 0.950 22 H 0.085 0.915 23 H 0.105 0.895 24 H 0.113 0.887 25 H 0.110 0.890 26 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.886 -9.141 1.634 10.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.329 5.329 3 C -0.396 4.396 4 H 0.092 0.908 5 C -0.250 4.250 6 N -0.585 5.585 7 Si 0.798 3.202 8 H -0.210 1.210 9 H -0.223 1.223 10 H -0.194 1.194 11 C 0.052 3.948 12 H 0.095 0.905 13 C -0.176 4.176 14 C -0.190 4.190 15 S -0.127 6.127 16 C -0.208 4.208 17 H 0.007 0.993 18 H 0.061 0.939 19 H 0.035 0.965 20 H 0.056 0.944 21 H 0.069 0.931 22 H 0.104 0.896 23 H 0.123 0.877 24 H 0.131 0.869 25 H 0.128 0.872 26 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 2.796 -9.446 2.155 10.084 hybrid contribution 0.923 1.671 -0.659 2.019 sum 3.718 -7.775 1.496 8.747 Atomic orbital electron populations 1.20575 0.82886 0.96984 0.96454 1.44282 1.01984 1.00891 1.85746 1.19626 0.98778 0.86770 1.34448 0.90772 1.25825 0.98579 1.02014 0.98562 1.70267 1.20343 1.27592 1.40317 0.85234 0.77175 0.79600 0.78168 1.21043 1.22288 1.19410 1.21113 0.96530 0.86337 0.90775 0.90531 1.22513 1.01555 0.94219 0.99270 1.24117 1.02845 0.99531 0.92536 1.87751 1.41927 1.62876 1.20108 1.24788 0.97178 0.97713 1.01119 0.99339 0.93887 0.96549 0.94400 0.93075 0.89632 0.87697 0.86862 0.87205 0.89412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.09 7.98 127.77 1.02 10.11 15 2 N -0.61 -30.15 2.58 -701.62 -1.81 -31.96 15 3 C -0.27 -14.47 9.57 84.03 0.80 -13.67 15 4 H 0.07 3.84 7.82 -2.91 -0.02 3.82 15 5 C -0.05 -3.08 5.07 84.86 0.43 -2.65 15 6 N -0.94 -56.34 10.71 21.65 0.23 -56.11 15 7 Si 0.97 45.05 29.57 68.60 2.03 47.08 15 8 H -0.28 -12.89 7.11 99.48 0.71 -12.18 15 9 H -0.30 -13.96 7.11 99.48 0.71 -13.25 15 10 H -0.27 -11.89 7.11 99.48 0.71 -11.19 15 11 C 0.16 6.24 3.08 45.20 0.14 6.38 15 12 H 0.08 2.87 7.83 -2.38 -0.02 2.85 15 13 C -0.13 -4.61 5.81 30.80 0.18 -4.43 15 14 C -0.04 -1.17 7.46 72.41 0.54 -0.63 15 15 S -0.35 -11.71 21.26 -56.49 -1.20 -12.92 15 16 C -0.06 -1.95 6.62 72.41 0.48 -1.47 15 17 H -0.01 -0.66 7.32 -2.39 -0.02 -0.68 15 18 H 0.04 2.00 5.57 -2.39 -0.01 1.99 15 19 H 0.02 0.91 6.84 -2.39 -0.02 0.89 15 20 H 0.25 14.43 8.31 -92.71 -0.77 13.66 15 21 H 0.05 2.13 6.89 -2.39 -0.02 2.12 15 22 H 0.09 2.53 8.14 -2.38 -0.02 2.51 15 23 H 0.10 2.71 8.14 -2.38 -0.02 2.69 15 24 H 0.11 2.43 8.14 -2.39 -0.02 2.42 15 25 H 0.11 2.97 8.14 -2.38 -0.02 2.95 15 26 H 0.09 3.27 8.01 -2.39 -0.02 3.25 15 Total: -1.00 -62.42 222.19 3.99 -58.43 By element: Atomic # 1 Polarization: 0.69 SS G_CDS: 1.15 Total: 1.84 kcal Atomic # 6 Polarization: -9.95 SS G_CDS: 3.59 Total: -6.36 kcal Atomic # 7 Polarization: -86.50 SS G_CDS: -1.58 Total: -88.07 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Atomic # 16 Polarization: -11.71 SS G_CDS: -1.20 Total: -12.92 kcal Total: -62.42 3.99 -58.43 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037174885.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.221 kcal (2) G-P(sol) polarization free energy of solvation -62.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.427 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds