Wall clock time and date at job start Sun Mar 29 2020 21:31:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.49091 * 2 1 4 4 C 1.53054 * 109.48900 * 120.04489 * 2 1 3 5 5 N 1.46955 * 109.36510 * 178.37133 * 4 2 1 6 6 C 1.46955 * 110.87700 * 300.67815 * 5 4 2 7 7 C 1.53046 * 109.36598 * 59.31971 * 6 5 4 8 8 N 1.46954 * 109.48825 * 239.95657 * 2 1 3 9 9 C 1.46896 * 111.00225 * 56.84590 * 8 2 1 10 10 C 1.50703 * 109.47236 * 64.14197 * 9 8 2 11 11 H 1.07996 * 119.99615 * 4.87972 * 10 9 8 12 12 C 1.37876 * 120.00047 * 184.88265 * 10 9 8 13 13 N 1.31514 * 120.00086 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 119.99956 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.46962 * 0.02562 * 14 12 10 16 16 H 1.48500 * 109.47030 * 120.00283 * 14 12 10 17 17 H 1.48502 * 109.47212 * 239.99922 * 14 12 10 18 18 H 1.09001 * 109.47033 * 300.00025 * 1 2 3 19 19 H 1.08997 * 109.46835 * 60.00217 * 1 2 3 20 20 H 1.08993 * 109.47110 * 179.97438 * 1 2 3 21 21 H 1.09003 * 109.48386 * 298.33158 * 4 2 1 22 22 H 1.08993 * 109.48929 * 58.37325 * 4 2 1 23 23 H 1.00903 * 111.00218 * 64.54509 * 5 4 2 24 24 H 1.09000 * 109.48892 * 179.29057 * 6 5 4 25 25 H 1.09001 * 109.48719 * 299.32741 * 6 5 4 26 26 H 1.09004 * 109.48708 * 61.57039 * 7 6 5 27 27 H 1.09006 * 109.48718 * 181.62759 * 7 6 5 28 28 H 1.09001 * 109.47421 * 184.14026 * 9 8 2 29 29 H 1.09006 * 109.46820 * 304.14048 * 9 8 2 30 30 H 0.96999 * 120.00410 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0276 0.0000 4 6 2.0406 -0.7224 1.2490 5 7 3.5096 -0.7550 1.2267 6 6 3.9999 -1.4490 0.0277 7 6 3.4893 -0.7267 -1.2212 8 7 2.0203 -0.6936 -1.1992 9 6 1.4889 -0.0735 -2.4203 10 6 2.0087 1.3364 -2.5349 11 1 2.7291 1.7060 -1.8202 12 6 1.5646 2.1544 -3.5520 13 7 0.6869 1.7044 -4.4220 14 14 2.2085 3.9022 -3.6936 15 1 3.1789 4.1623 -2.6001 16 1 2.8828 4.0765 -5.0052 17 1 1.0759 4.8570 -3.5886 18 1 -0.3633 0.5138 0.8900 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3633 -1.0276 -0.0005 21 1 1.7022 -0.1925 2.1394 22 1 1.6540 -1.7414 1.2633 23 1 3.8930 0.1764 1.2875 24 1 5.0899 -1.4491 0.0277 25 1 3.6363 -2.4766 0.0281 26 1 3.8756 0.2925 -1.2353 27 1 3.8278 -1.2565 -2.1117 28 1 1.8075 -0.6499 -3.2888 29 1 0.3999 -0.0567 -2.3749 30 1 0.3747 2.2798 -5.1378 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000039113465.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:31:00 Heat of formation + Delta-G solvation = 0.039259 kcal Electronic energy + Delta-G solvation = -11873.619487 eV Core-core repulsion = 9896.383502 eV Total energy + Delta-G solvation = -1977.235985 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -38.69984 -34.20353 -32.29080 -31.58497 -27.46680 -26.18272 -24.24039 -21.92745 -21.31240 -19.23719 -16.41816 -15.48609 -14.71954 -14.65252 -14.31444 -13.85655 -13.41885 -12.52201 -12.16462 -11.56652 -11.38098 -11.21983 -11.15499 -10.97195 -10.69999 -10.65596 -10.31800 -9.97717 -9.89133 -9.65512 -8.45786 -7.93767 -7.17263 -6.06111 -4.15402 3.22561 3.30961 3.33817 4.36722 4.70006 4.93581 5.23726 5.58457 5.74464 5.77439 5.83501 5.94454 6.05510 6.20208 6.34704 6.41753 6.47891 6.70325 6.89710 6.93924 7.23065 7.37929 7.51137 7.70444 7.87710 8.04183 8.25523 8.30021 8.94868 9.51335 10.98637 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.048819 B = 0.012984 C = 0.012261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.408962 B = 2155.965991 C = 2283.024869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.052 3.948 3 H 0.043 0.957 4 C 0.062 3.938 5 N -0.690 5.690 6 C 0.057 3.943 7 C 0.025 3.975 8 N -0.534 5.534 9 C 0.182 3.818 10 C -0.547 4.547 11 H 0.054 0.946 12 C 0.065 3.935 13 N -0.890 5.890 14 Si 0.888 3.112 15 H -0.275 1.275 16 H -0.283 1.283 17 H -0.283 1.283 18 H 0.044 0.956 19 H 0.070 0.930 20 H 0.051 0.949 21 H 0.067 0.933 22 H 0.073 0.927 23 H 0.334 0.666 24 H 0.067 0.933 25 H 0.073 0.927 26 H 0.037 0.963 27 H 0.068 0.932 28 H 0.025 0.975 29 H 0.042 0.958 30 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.811 -2.840 7.799 8.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.058 4.058 3 H 0.060 0.940 4 C -0.068 4.068 5 N -0.318 5.318 6 C -0.073 4.073 7 C -0.105 4.105 8 N -0.259 5.259 9 C 0.056 3.944 10 C -0.586 4.586 11 H 0.072 0.928 12 C -0.138 4.138 13 N -0.529 5.529 14 Si 0.716 3.284 15 H -0.200 1.200 16 H -0.209 1.209 17 H -0.209 1.209 18 H 0.063 0.937 19 H 0.089 0.911 20 H 0.070 0.930 21 H 0.085 0.915 22 H 0.091 0.909 23 H 0.150 0.850 24 H 0.086 0.914 25 H 0.091 0.909 26 H 0.056 0.944 27 H 0.086 0.914 28 H 0.043 0.957 29 H 0.060 0.940 30 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.587 -3.861 8.076 9.318 hybrid contribution 0.407 2.659 -1.110 2.910 sum 2.994 -1.202 6.966 7.677 Atomic orbital electron populations 1.21743 0.94899 1.01299 1.01661 1.22101 0.95939 0.96267 0.91542 0.93953 1.22174 0.87285 1.01005 0.96306 1.60881 1.08178 1.22936 1.39770 1.22123 0.98559 0.98631 0.87969 1.22600 0.90393 0.99324 0.98192 1.62653 1.06483 1.53117 1.03657 1.19840 0.96417 0.92008 0.86102 1.21741 1.25540 0.98859 1.12437 0.92775 1.24957 0.94856 0.98328 0.95644 1.69948 1.30795 1.36425 1.15705 0.86606 0.78823 0.85029 0.77962 1.19955 1.20914 1.20909 0.93699 0.91099 0.92998 0.91459 0.90858 0.85011 0.91407 0.90875 0.94439 0.91393 0.95664 0.94037 0.92848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.56 8.87 37.16 0.33 -2.23 16 2 C 0.05 1.02 2.25 -67.66 -0.15 0.86 16 3 H 0.04 0.93 6.93 -51.93 -0.36 0.57 16 4 C 0.06 1.02 6.00 -3.77 -0.02 0.99 16 5 N -0.69 -10.95 6.91 -113.64 -0.79 -11.74 16 6 C 0.06 0.92 6.72 -3.77 -0.03 0.90 16 7 C 0.03 0.49 5.24 -3.77 -0.02 0.47 16 8 N -0.53 -11.57 4.73 -227.92 -1.08 -12.65 16 9 C 0.18 4.70 4.79 -4.98 -0.02 4.67 16 10 C -0.55 -15.01 7.67 -34.44 -0.26 -15.27 16 11 H 0.05 1.49 5.82 -52.49 -0.31 1.19 16 12 C 0.06 1.82 5.46 -17.82 -0.10 1.72 16 13 N -0.89 -26.13 13.29 55.43 0.74 -25.40 16 14 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 15 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 16 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 17 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 18 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 19 H 0.07 1.53 6.27 -51.93 -0.33 1.20 16 20 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 21 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 22 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 23 H 0.33 5.10 8.89 -39.29 -0.35 4.75 16 24 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 25 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 26 H 0.04 0.81 6.47 -51.93 -0.34 0.47 16 27 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 28 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.04 1.14 6.02 -51.93 -0.31 0.83 16 30 H 0.26 7.26 8.31 -40.82 -0.34 6.93 16 LS Contribution 236.63 15.07 3.57 3.57 Total: -1.00 -28.70 236.63 -7.36 -36.06 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: -4.51 Total: 1.60 kcal Atomic # 6 Polarization: -7.61 SS G_CDS: -0.28 Total: -7.88 kcal Atomic # 7 Polarization: -48.66 SS G_CDS: -1.13 Total: -49.79 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 3.57 Total: 3.57 kcal Total: -28.70 -7.36 -36.06 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039113465.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.101 kcal (2) G-P(sol) polarization free energy of solvation -28.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.062 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds