Wall clock time and date at job start Sun Mar 29 2020 21:31:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.49091 * 2 1 4 4 C 1.53054 * 109.48900 * 120.04489 * 2 1 3 5 5 N 1.46955 * 109.36510 * 178.37133 * 4 2 1 6 6 C 1.46955 * 110.87700 * 300.67815 * 5 4 2 7 7 C 1.53046 * 109.36598 * 59.31971 * 6 5 4 8 8 N 1.46954 * 109.48825 * 239.95657 * 2 1 3 9 9 C 1.46896 * 111.00225 * 56.84590 * 8 2 1 10 10 C 1.50703 * 109.47236 * 64.14197 * 9 8 2 11 11 H 1.07996 * 119.99615 * 4.87972 * 10 9 8 12 12 C 1.37876 * 120.00047 * 184.88265 * 10 9 8 13 13 N 1.31514 * 120.00086 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 119.99956 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.46962 * 0.02562 * 14 12 10 16 16 H 1.48500 * 109.47030 * 120.00283 * 14 12 10 17 17 H 1.48502 * 109.47212 * 239.99922 * 14 12 10 18 18 H 1.09001 * 109.47033 * 300.00025 * 1 2 3 19 19 H 1.08997 * 109.46835 * 60.00217 * 1 2 3 20 20 H 1.08993 * 109.47110 * 179.97438 * 1 2 3 21 21 H 1.09003 * 109.48386 * 298.33158 * 4 2 1 22 22 H 1.08993 * 109.48929 * 58.37325 * 4 2 1 23 23 H 1.00903 * 111.00218 * 64.54509 * 5 4 2 24 24 H 1.09000 * 109.48892 * 179.29057 * 6 5 4 25 25 H 1.09001 * 109.48719 * 299.32741 * 6 5 4 26 26 H 1.09004 * 109.48708 * 61.57039 * 7 6 5 27 27 H 1.09006 * 109.48718 * 181.62759 * 7 6 5 28 28 H 1.09001 * 109.47421 * 184.14026 * 9 8 2 29 29 H 1.09006 * 109.46820 * 304.14048 * 9 8 2 30 30 H 0.96999 * 120.00410 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0276 0.0000 4 6 2.0406 -0.7224 1.2490 5 7 3.5096 -0.7550 1.2267 6 6 3.9999 -1.4490 0.0277 7 6 3.4893 -0.7267 -1.2212 8 7 2.0203 -0.6936 -1.1992 9 6 1.4889 -0.0735 -2.4203 10 6 2.0087 1.3364 -2.5349 11 1 2.7291 1.7060 -1.8202 12 6 1.5646 2.1544 -3.5520 13 7 0.6869 1.7044 -4.4220 14 14 2.2085 3.9022 -3.6936 15 1 3.1789 4.1623 -2.6001 16 1 2.8828 4.0765 -5.0052 17 1 1.0759 4.8570 -3.5886 18 1 -0.3633 0.5138 0.8900 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3633 -1.0276 -0.0005 21 1 1.7022 -0.1925 2.1394 22 1 1.6540 -1.7414 1.2633 23 1 3.8930 0.1764 1.2875 24 1 5.0899 -1.4491 0.0277 25 1 3.6363 -2.4766 0.0281 26 1 3.8756 0.2925 -1.2353 27 1 3.8278 -1.2565 -2.1117 28 1 1.8075 -0.6499 -3.2888 29 1 0.3999 -0.0567 -2.3749 30 1 0.3747 2.2798 -5.1378 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000039113465.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:31:00 Heat of formation + Delta-G solvation = -22.066042 kcal Electronic energy + Delta-G solvation = -11874.578045 eV Core-core repulsion = 9896.383502 eV Total energy + Delta-G solvation = -1978.194543 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.27221 -35.93195 -34.19503 -33.18810 -29.29084 -27.83544 -26.01188 -23.67241 -22.79623 -20.91788 -18.47477 -17.13522 -16.43027 -16.31474 -15.88763 -15.49083 -15.05105 -14.41275 -13.76332 -13.27233 -13.10840 -12.95375 -12.76060 -12.58554 -12.44980 -12.36649 -11.91507 -11.74106 -11.69870 -11.57546 -10.63252 -9.38127 -8.99008 -8.18911 -6.39063 1.31329 1.32727 1.43867 2.32596 3.05069 3.23617 3.45756 4.10190 4.30853 4.34887 4.38354 4.44381 4.65605 4.73314 4.91704 4.95091 5.00547 5.18889 5.20889 5.27632 5.35348 5.40932 5.72822 6.01389 6.02010 6.20975 6.45798 6.54637 6.81858 7.32205 8.83077 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.048819 B = 0.012984 C = 0.012261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.408962 B = 2155.965991 C = 2283.024869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.050 3.950 3 H 0.017 0.983 4 C 0.072 3.928 5 N -0.683 5.683 6 C 0.069 3.931 7 C 0.025 3.975 8 N -0.536 5.536 9 C 0.195 3.805 10 C -0.552 4.552 11 H 0.051 0.949 12 C 0.011 3.989 13 N -0.925 5.925 14 Si 0.957 3.043 15 H -0.269 1.269 16 H -0.278 1.278 17 H -0.277 1.277 18 H 0.075 0.925 19 H 0.031 0.969 20 H 0.060 0.940 21 H 0.093 0.907 22 H 0.078 0.922 23 H 0.339 0.661 24 H 0.094 0.906 25 H 0.077 0.923 26 H 0.017 0.983 27 H 0.059 0.941 28 H -0.006 1.006 29 H 0.020 0.980 30 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.662 -2.551 9.469 10.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.060 4.060 3 H 0.035 0.965 4 C -0.058 4.058 5 N -0.310 5.310 6 C -0.061 4.061 7 C -0.105 4.105 8 N -0.260 5.260 9 C 0.069 3.931 10 C -0.591 4.591 11 H 0.069 0.931 12 C -0.188 4.188 13 N -0.565 5.565 14 Si 0.782 3.218 15 H -0.193 1.193 16 H -0.203 1.203 17 H -0.203 1.203 18 H 0.093 0.907 19 H 0.050 0.950 20 H 0.079 0.921 21 H 0.112 0.888 22 H 0.096 0.904 23 H 0.156 0.844 24 H 0.113 0.887 25 H 0.096 0.904 26 H 0.035 0.965 27 H 0.078 0.922 28 H 0.013 0.987 29 H 0.038 0.962 30 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.451 -3.578 9.768 10.960 hybrid contribution 0.133 2.528 -1.619 3.005 sum 3.583 -1.050 8.148 8.963 Atomic orbital electron populations 1.21682 0.94356 1.01753 1.01213 1.22247 0.96505 0.95194 0.92054 0.96496 1.22148 0.87442 1.01035 0.95154 1.60906 1.07814 1.23312 1.38977 1.22092 1.00043 0.98117 0.85879 1.22691 0.88986 0.98623 1.00199 1.62609 1.07834 1.52677 1.02924 1.19489 0.95130 0.91355 0.87171 1.21925 1.25266 0.99614 1.12297 0.93089 1.25806 0.95065 1.02623 0.95299 1.70066 1.31984 1.38083 1.16370 0.85527 0.78354 0.79817 0.78106 1.19306 1.20325 1.20251 0.90650 0.94968 0.92058 0.88830 0.90394 0.84404 0.88743 0.90406 0.96485 0.92236 0.98748 0.96208 0.92591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.81 8.87 71.98 0.64 -4.17 16 2 C 0.05 1.92 2.25 44.92 0.10 2.02 16 3 H 0.02 0.74 6.93 -2.38 -0.02 0.72 16 4 C 0.07 2.15 6.00 86.31 0.52 2.66 16 5 N -0.68 -19.56 6.91 -513.45 -3.55 -23.11 16 6 C 0.07 2.04 6.72 86.31 0.58 2.62 16 7 C 0.03 0.98 5.24 86.31 0.45 1.43 16 8 N -0.54 -23.34 4.73 -875.01 -4.14 -27.48 16 9 C 0.20 10.45 4.79 85.56 0.41 10.86 16 10 C -0.55 -30.93 7.67 25.60 0.20 -30.74 16 11 H 0.05 2.84 5.82 -2.91 -0.02 2.83 16 12 C 0.01 0.65 5.46 84.65 0.46 1.11 16 13 N -0.93 -55.47 13.29 21.45 0.28 -55.19 16 14 Si 0.96 44.25 29.54 68.60 2.03 46.28 16 15 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 16 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 17 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 18 H 0.07 2.24 8.14 -2.39 -0.02 2.23 16 19 H 0.03 1.40 6.27 -2.39 -0.01 1.39 16 20 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 21 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 22 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 23 H 0.34 9.38 8.89 -89.69 -0.80 8.58 16 24 H 0.09 2.35 8.14 -2.39 -0.02 2.34 16 25 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 26 H 0.02 0.73 6.47 -2.39 -0.02 0.71 16 27 H 0.06 2.37 8.14 -2.38 -0.02 2.35 16 28 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 29 H 0.02 1.14 6.02 -2.38 -0.01 1.13 16 30 H 0.27 14.92 8.31 -92.71 -0.77 14.15 16 Total: -1.00 -61.92 236.63 -1.70 -63.62 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: 0.32 Total: 10.07 kcal Atomic # 6 Polarization: -17.55 SS G_CDS: 3.36 Total: -14.19 kcal Atomic # 7 Polarization: -98.37 SS G_CDS: -7.40 Total: -105.78 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.28 kcal Total: -61.92 -1.70 -63.62 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039113465.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.554 kcal (2) G-P(sol) polarization free energy of solvation -61.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds