Wall clock time and date at job start Sun Mar 29 2020 21:46:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47077 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47113 * 300.00085 * 3 2 1 6 6 H 1.48500 * 109.47035 * 59.99995 * 3 2 1 7 7 C 1.37880 * 119.99642 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99779 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99772 * 359.97438 * 7 2 1 10 10 O 1.42905 * 109.46461 * 180.02562 * 9 7 2 11 11 C 1.42908 * 113.99577 * 180.02562 * 10 9 7 12 12 C 1.53175 * 109.54043 * 90.44155 * 11 10 9 13 13 C 1.53092 * 109.16179 * 176.84918 * 12 11 10 14 14 O 1.42910 * 109.41107 * 302.39040 * 13 12 11 15 15 C 1.42900 * 114.09727 * 61.16189 * 14 13 12 16 16 C 1.53090 * 109.41229 * 298.83586 * 15 14 13 17 17 H 0.97003 * 119.99677 * 359.97438 * 1 2 3 18 18 H 1.08990 * 109.47326 * 60.00200 * 9 7 2 19 19 H 1.08999 * 109.46802 * 299.99564 * 9 7 2 20 20 H 1.08997 * 109.61229 * 330.22369 * 11 10 9 21 21 H 1.09006 * 109.52647 * 296.75219 * 12 11 10 22 22 H 1.08998 * 109.52537 * 56.94111 * 12 11 10 23 23 H 1.08998 * 109.48147 * 182.40843 * 13 12 11 24 24 H 1.08997 * 109.48550 * 62.37144 * 13 12 11 25 25 H 1.09003 * 109.47953 * 178.86010 * 15 14 13 26 26 H 1.08995 * 109.49265 * 58.82602 * 15 14 13 27 27 H 1.09001 * 109.52724 * 297.70937 * 16 15 14 28 28 H 1.09000 * 109.52338 * 177.51272 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2508 -2.4992 -0.0005 10 8 2.1795 -3.5853 -0.0005 11 6 1.5648 -4.8755 -0.0011 12 6 1.3550 -5.3424 -1.4448 13 6 0.7691 -6.7567 -1.4354 14 8 1.6475 -7.6299 -0.7225 15 6 1.8438 -7.2697 0.6464 16 6 2.4728 -5.8760 0.7206 17 1 -0.4850 0.8401 0.0004 18 1 0.6239 -2.5567 -0.8902 19 1 0.6246 -2.5570 0.8897 20 1 0.6028 -4.8226 0.5085 21 1 0.6655 -4.6659 -1.9499 22 1 2.3109 -5.3475 -1.9686 23 1 0.6575 -7.1108 -2.4602 24 1 -0.2053 -6.7434 -0.9472 25 1 2.5064 -7.9933 1.1212 26 1 0.8835 -7.2630 1.1620 27 1 3.4513 -5.8919 0.2405 28 1 2.5827 -5.5810 1.7641 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000040992968.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:13 Heat of formation + Delta-G solvation = -110.415454 kcal Electronic energy + Delta-G solvation = -11544.706152 eV Core-core repulsion = 9367.243167 eV Total energy + Delta-G solvation = -2177.462985 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.16667 -36.52061 -32.95534 -31.69989 -30.90194 -27.24464 -24.00005 -23.35582 -22.18866 -19.97820 -16.65066 -16.11765 -15.84390 -15.40109 -14.65724 -14.43713 -14.13830 -13.44821 -12.75793 -12.68345 -12.02591 -11.76173 -11.10278 -11.04585 -10.92096 -10.71647 -10.43801 -10.25755 -9.83914 -9.52278 -9.09273 -8.84011 -8.17891 -6.13696 -4.15491 3.27566 3.34064 3.40733 3.98819 4.31855 4.71836 5.07415 5.18000 5.22278 5.23619 5.40939 5.47997 5.68307 5.79559 5.91185 5.97068 6.15328 6.30291 6.48819 6.58123 7.08302 7.30034 7.39865 7.77638 8.12683 8.55162 8.98426 9.49681 10.97866 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.090798 B = 0.008141 C = 0.007879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 308.301654 B = 3438.469056 C = 3552.903652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.056 3.944 3 Si 0.908 3.092 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.515 4.515 8 H 0.067 0.933 9 C 0.194 3.806 10 O -0.387 6.387 11 C 0.088 3.912 12 C -0.177 4.177 13 C 0.064 3.936 14 O -0.388 6.388 15 C 0.065 3.935 16 C -0.153 4.153 17 H 0.264 0.736 18 H 0.005 0.995 19 H 0.005 0.995 20 H 0.051 0.949 21 H 0.076 0.924 22 H 0.076 0.924 23 H 0.092 0.908 24 H 0.048 0.952 25 H 0.093 0.907 26 H 0.049 0.951 27 H 0.076 0.924 28 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.987 -11.060 -0.126 11.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.735 3.265 4 H -0.194 1.194 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.554 4.554 8 H 0.085 0.915 9 C 0.120 3.880 10 O -0.307 6.307 11 C 0.029 3.971 12 C -0.215 4.215 13 C -0.012 4.012 14 O -0.307 6.307 15 C -0.012 4.012 16 C -0.190 4.190 17 H 0.073 0.927 18 H 0.023 0.977 19 H 0.022 0.978 20 H 0.069 0.931 21 H 0.094 0.906 22 H 0.094 0.906 23 H 0.110 0.890 24 H 0.067 0.933 25 H 0.112 0.888 26 H 0.067 0.933 27 H 0.095 0.905 28 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 1.121 -11.059 -0.210 11.118 hybrid contribution -0.155 1.237 0.099 1.251 sum 0.966 -9.822 -0.111 9.870 Atomic orbital electron populations 1.69975 1.06124 1.27085 1.50620 1.24956 0.94982 0.99471 0.95088 0.86278 0.80047 0.82525 0.77645 1.19446 1.20809 1.20809 1.21111 0.94128 0.89364 1.50752 0.91481 1.20255 0.88781 0.83657 0.95301 1.87912 1.35447 1.12655 1.94676 1.21826 0.95540 0.85982 0.93726 1.22722 1.02823 0.96555 0.99432 1.22568 0.92157 0.89675 0.96824 1.87872 1.67577 1.52045 1.23168 1.22561 0.99793 0.95800 0.83028 1.22276 1.00647 0.94300 1.01813 0.92686 0.97685 0.97758 0.93125 0.90582 0.90558 0.89001 0.93340 0.88841 0.93309 0.90508 0.90520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.95 13.29 55.43 0.74 -26.21 15 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 15 3 Si 0.91 21.90 29.54 -169.99 -5.02 16.87 15 4 H -0.27 -6.41 7.11 56.52 0.40 -6.01 15 5 H -0.28 -6.67 7.11 56.52 0.40 -6.26 15 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 15 7 C -0.52 -15.31 9.43 -34.44 -0.32 -15.64 15 8 H 0.07 1.99 7.81 -52.49 -0.41 1.58 15 9 C 0.19 5.38 5.51 36.01 0.20 5.57 15 10 O -0.39 -9.53 9.98 -35.23 -0.35 -9.88 15 11 C 0.09 1.69 2.70 -26.55 -0.07 1.62 15 12 C -0.18 -3.01 5.76 -26.59 -0.15 -3.17 15 13 C 0.06 0.90 6.84 37.21 0.25 1.15 15 14 O -0.39 -5.76 10.77 -35.23 -0.38 -6.14 15 15 C 0.06 0.86 6.84 37.20 0.25 1.11 15 16 C -0.15 -2.42 5.79 -26.59 -0.15 -2.57 15 17 H 0.26 7.36 8.31 -40.82 -0.34 7.02 15 18 H 0.01 0.15 7.99 -51.93 -0.42 -0.26 15 19 H 0.00 0.13 8.09 -51.93 -0.42 -0.29 15 20 H 0.05 0.97 7.79 -51.93 -0.40 0.56 15 21 H 0.08 1.33 7.99 -51.93 -0.42 0.92 15 22 H 0.08 1.33 8.14 -51.93 -0.42 0.91 15 23 H 0.09 1.09 8.14 -51.93 -0.42 0.67 15 24 H 0.05 0.63 8.14 -51.93 -0.42 0.20 15 25 H 0.09 1.01 8.14 -51.93 -0.42 0.59 15 26 H 0.05 0.59 8.14 -51.93 -0.42 0.17 15 27 H 0.08 1.25 8.14 -51.93 -0.42 0.83 15 28 H 0.08 1.16 8.14 -51.93 -0.42 0.74 15 LS Contribution 238.21 15.07 3.59 3.59 Total: -1.00 -31.36 238.21 -5.68 -37.04 By element: Atomic # 1 Polarization: -0.73 SS G_CDS: -4.16 Total: -4.89 kcal Atomic # 6 Polarization: -10.29 SS G_CDS: -0.09 Total: -10.38 kcal Atomic # 7 Polarization: -26.95 SS G_CDS: 0.74 Total: -26.21 kcal Atomic # 8 Polarization: -15.29 SS G_CDS: -0.73 Total: -16.02 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 3.59 Total: 3.59 kcal Total: -31.36 -5.68 -37.04 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040992968.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.373 kcal (2) G-P(sol) polarization free energy of solvation -31.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds