Wall clock time and date at job start Sun Mar 29 2020 21:43:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36941 * 120.00143 * 2 1 4 4 H 1.07998 * 119.99902 * 156.71365 * 3 2 1 5 5 C 1.38807 * 119.99822 * 336.71889 * 3 2 1 6 6 N 1.31624 * 119.99967 * 331.03992 * 5 3 2 7 7 Si 1.86801 * 120.00018 * 151.04695 * 5 3 2 8 8 H 1.48499 * 109.46931 * 269.99241 * 7 5 3 9 9 H 1.48501 * 109.47271 * 149.99703 * 7 5 3 10 10 H 1.48494 * 109.47431 * 29.99452 * 7 5 3 11 11 C 1.46507 * 120.00262 * 180.02562 * 2 1 3 12 12 C 1.53003 * 109.46736 * 269.99761 * 11 2 1 13 13 H 1.08993 * 110.80856 * 305.69905 * 12 11 2 14 14 C 1.54812 * 110.90465 * 182.06701 * 12 11 2 15 15 C 1.54098 * 104.18960 * 220.92094 * 14 12 11 16 16 O 1.43745 * 107.29315 * 357.97498 * 15 14 12 17 17 C 1.44419 * 107.00149 * 26.48631 * 16 15 14 18 18 H 1.08993 * 109.47557 * 92.71173 * 1 2 3 19 19 H 1.08997 * 109.46956 * 212.71728 * 1 2 3 20 20 H 1.09007 * 109.46809 * 332.71088 * 1 2 3 21 21 H 0.96994 * 120.00002 * 353.97881 * 6 5 3 22 22 H 1.08996 * 109.46502 * 29.99149 * 11 2 1 23 23 H 1.08992 * 109.47262 * 150.00067 * 11 2 1 24 24 H 1.08999 * 110.49054 * 339.60163 * 14 12 11 25 25 H 1.09001 * 110.48579 * 102.11280 * 14 12 11 26 26 H 1.09006 * 109.87442 * 117.39700 * 15 14 12 27 27 H 1.09000 * 109.88218 * 238.54615 * 15 14 12 28 28 H 1.09002 * 110.65343 * 201.48375 * 17 16 15 29 29 H 1.09003 * 110.60337 * 78.47387 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1637 1.2240 0.3697 5 6 1.5404 2.3391 -0.4751 6 7 0.6119 2.2578 -1.4045 7 14 2.0384 4.0064 0.2043 8 1 1.1878 4.3377 1.3756 9 1 1.8604 5.0418 -0.8453 10 1 3.4626 3.9652 0.6226 11 6 2.1975 -1.2688 -0.0006 12 6 2.4526 -1.7110 1.4418 13 1 2.9533 -0.9238 2.0053 14 6 3.2712 -3.0244 1.4804 15 6 2.6141 -3.8461 2.6062 16 8 1.5662 -3.0388 3.1688 17 6 1.1306 -2.1310 2.1335 18 1 -0.3634 -0.0486 -1.0264 19 1 -0.3633 -0.8646 0.5554 20 1 -0.3633 0.9134 0.4712 21 1 0.4148 1.4036 -1.8197 22 1 1.6084 -2.0281 -0.5146 23 1 3.1499 -1.1382 -0.5143 24 1 3.1935 -3.5504 0.5289 25 1 4.3149 -2.8166 1.7162 26 1 2.1948 -4.7656 2.1976 27 1 3.3525 -4.0817 3.3726 28 1 0.6320 -1.2640 2.5671 29 1 0.4734 -2.6402 1.4285 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000045060020.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:06 Heat of formation + Delta-G solvation = -53.105739 kcal Electronic energy + Delta-G solvation = -11755.528377 eV Core-core repulsion = 9678.269190 eV Total energy + Delta-G solvation = -2077.259187 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.41995 -37.73557 -34.34778 -32.33699 -30.07636 -28.37490 -26.77724 -23.69136 -22.86975 -21.36610 -19.33740 -17.60509 -16.75952 -16.23211 -16.11142 -15.69894 -15.35837 -14.83161 -14.22117 -13.73663 -13.29045 -12.82214 -12.76462 -12.53321 -12.44142 -12.21269 -11.88748 -11.77851 -11.53453 -11.40256 -10.63293 -10.44340 -9.00651 -8.25885 -5.38398 1.58268 1.64758 1.82698 2.64885 3.00101 3.19321 3.47019 3.80073 3.90562 4.03039 4.22679 4.38026 4.54297 4.60643 4.69688 4.79229 4.82641 4.86507 4.93307 5.04642 5.12076 5.17880 5.35774 5.81792 5.91635 6.38093 7.04315 7.77781 8.16006 8.98272 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.063698 B = 0.010565 C = 0.010189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 439.465699 B = 2649.539090 C = 2747.405728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.144 3.856 2 N -0.622 5.622 3 C -0.362 4.362 4 H 0.051 0.949 5 C -0.073 4.073 6 N -0.941 5.941 7 Si 1.112 2.888 8 H -0.285 1.285 9 H -0.294 1.294 10 H -0.274 1.274 11 C 0.161 3.839 12 C -0.133 4.133 13 H 0.057 0.943 14 C -0.143 4.143 15 C 0.044 3.956 16 O -0.406 6.406 17 C 0.065 3.935 18 H -0.004 1.004 19 H 0.051 0.949 20 H 0.023 0.977 21 H 0.256 0.744 22 H 0.053 0.947 23 H 0.043 0.957 24 H 0.088 0.912 25 H 0.084 0.916 26 H 0.072 0.928 27 H 0.096 0.904 28 H 0.074 0.926 29 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.659 -10.173 5.645 12.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.002 4.002 2 N -0.346 5.346 3 C -0.491 4.491 4 H 0.069 0.931 5 C -0.270 4.270 6 N -0.582 5.582 7 Si 0.937 3.063 8 H -0.212 1.212 9 H -0.220 1.220 10 H -0.199 1.199 11 C 0.036 3.964 12 C -0.155 4.155 13 H 0.076 0.924 14 C -0.182 4.182 15 C -0.032 4.032 16 O -0.326 6.326 17 C -0.011 4.011 18 H 0.014 0.986 19 H 0.069 0.931 20 H 0.042 0.958 21 H 0.066 0.934 22 H 0.071 0.929 23 H 0.062 0.938 24 H 0.106 0.894 25 H 0.102 0.898 26 H 0.090 0.910 27 H 0.114 0.886 28 H 0.092 0.908 29 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 3.252 -8.581 5.803 10.858 hybrid contribution 0.297 -1.387 -0.400 1.473 sum 3.549 -9.968 5.403 11.880 Atomic orbital electron populations 1.20869 0.83684 0.98688 0.96939 1.44176 1.01500 1.02229 1.86685 1.20175 1.00545 0.88532 1.39885 0.93094 1.27054 0.98827 1.05361 0.95742 1.70878 1.37155 1.27682 1.22529 0.82897 0.76007 0.72071 0.75359 1.21222 1.22021 1.19897 1.20829 0.95594 0.86747 0.93280 1.23208 0.96106 0.97343 0.98819 0.92425 1.22934 1.00379 0.94721 1.00124 1.23326 0.89701 0.93863 0.96311 1.88802 1.54624 1.51951 1.37231 1.23488 0.96216 0.91970 0.89465 0.98629 0.93059 0.95820 0.93352 0.92876 0.93819 0.89359 0.89775 0.90975 0.88589 0.90770 0.91817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.14 6.86 8.75 127.77 1.12 7.98 15 2 N -0.62 -31.09 2.75 -726.95 -2.00 -33.09 15 3 C -0.36 -20.38 9.47 84.03 0.80 -19.59 15 4 H 0.05 2.89 7.98 -2.91 -0.02 2.87 15 5 C -0.07 -4.18 4.63 84.86 0.39 -3.79 15 6 N -0.94 -57.77 12.70 21.65 0.27 -57.49 15 7 Si 1.11 51.64 30.01 68.60 2.06 53.70 15 8 H -0.29 -12.81 7.11 99.48 0.71 -12.11 15 9 H -0.29 -13.72 7.11 99.48 0.71 -13.01 15 10 H -0.27 -11.76 7.11 99.48 0.71 -11.05 15 11 C 0.16 6.45 5.08 86.38 0.44 6.89 15 12 C -0.13 -4.62 3.36 -9.49 -0.03 -4.65 15 13 H 0.06 2.29 8.14 -2.39 -0.02 2.27 15 14 C -0.14 -3.65 6.60 31.58 0.21 -3.44 15 15 C 0.04 1.07 7.70 72.35 0.56 1.63 15 16 O -0.41 -13.14 11.52 -148.98 -1.72 -14.86 15 17 C 0.06 2.18 5.67 72.67 0.41 2.59 15 18 H 0.00 -0.22 6.83 -2.39 -0.02 -0.23 15 19 H 0.05 2.05 6.15 -2.39 -0.01 2.03 15 20 H 0.02 1.23 7.25 -2.38 -0.02 1.21 15 21 H 0.26 15.96 6.31 -92.71 -0.59 15.38 15 22 H 0.05 1.93 7.98 -2.39 -0.02 1.91 15 23 H 0.04 1.79 8.04 -2.39 -0.02 1.78 15 24 H 0.09 1.98 7.86 -2.39 -0.02 1.96 15 25 H 0.08 1.95 8.14 -2.39 -0.02 1.93 15 26 H 0.07 1.47 8.14 -2.38 -0.02 1.45 15 27 H 0.10 1.95 8.14 -2.39 -0.02 1.93 15 28 H 0.07 2.73 8.02 -2.39 -0.02 2.71 15 29 H 0.06 2.00 7.49 -2.39 -0.02 1.98 15 Total: -1.00 -64.91 236.02 3.80 -61.10 By element: Atomic # 1 Polarization: 1.72 SS G_CDS: 1.29 Total: 3.01 kcal Atomic # 6 Polarization: -16.27 SS G_CDS: 3.89 Total: -12.38 kcal Atomic # 7 Polarization: -88.86 SS G_CDS: -1.72 Total: -90.58 kcal Atomic # 8 Polarization: -13.14 SS G_CDS: -1.72 Total: -14.86 kcal Atomic # 14 Polarization: 51.64 SS G_CDS: 2.06 Total: 53.70 kcal Total: -64.91 3.80 -61.10 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045060020.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.995 kcal (2) G-P(sol) polarization free energy of solvation -64.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds