Wall clock time and date at job start Sun Mar 29 2020 21:49:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.46278 * 2 1 4 4 C 1.53236 * 109.47290 * 119.99345 * 2 1 3 5 5 S 1.81736 * 108.91200 * 177.59165 * 4 2 1 6 6 C 1.81782 * 102.29137 * 305.64435 * 5 4 2 7 7 C 1.53239 * 108.90335 * 54.35705 * 6 5 4 8 8 N 1.46378 * 109.46492 * 240.01552 * 2 1 3 9 9 C 1.36934 * 119.64798 * 354.92352 * 8 2 1 10 10 H 1.07994 * 120.00250 * 29.85302 * 9 8 2 11 11 C 1.38817 * 120.00104 * 209.84786 * 9 8 2 12 12 N 1.31626 * 119.99693 * 17.53575 * 11 9 8 13 13 Si 1.86797 * 120.00235 * 197.53307 * 11 9 8 14 14 H 1.48498 * 109.47335 * 90.00068 * 13 11 9 15 15 H 1.48494 * 109.47088 * 210.00376 * 13 11 9 16 16 H 1.48500 * 109.47073 * 329.99932 * 13 11 9 17 17 H 1.09007 * 109.47044 * 300.00470 * 1 2 3 18 18 H 1.08997 * 109.47485 * 60.00377 * 1 2 3 19 19 H 1.08998 * 109.47038 * 180.02562 * 1 2 3 20 20 H 1.09001 * 109.58339 * 297.45646 * 4 2 1 21 21 H 1.09000 * 109.57833 * 57.72900 * 4 2 1 22 22 H 1.08996 * 109.46556 * 294.56343 * 6 5 4 23 23 H 1.09001 * 109.58991 * 174.21585 * 6 5 4 24 24 H 1.09002 * 109.46747 * 182.41839 * 7 6 5 25 25 H 1.08995 * 109.46782 * 62.42165 * 7 6 5 26 26 H 0.96997 * 119.99477 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0408 -0.7222 1.2512 5 16 3.8566 -0.7761 1.2002 6 6 4.1757 -1.5416 -0.4175 7 6 3.4488 -0.7363 -1.4998 8 7 2.0177 -0.6897 -1.1954 9 6 1.1258 -1.2975 -2.0381 10 1 0.1235 -0.9076 -2.1360 11 6 1.5100 -2.4149 -2.7667 12 7 2.5793 -3.0958 -2.4124 13 14 0.5095 -2.9523 -4.2498 14 1 1.0335 -2.2850 -5.4685 15 1 0.6122 -4.4251 -4.4089 16 1 -0.9126 -2.5739 -4.0509 17 1 -0.3633 0.5139 0.8900 18 1 -0.3634 0.5137 -0.8900 19 1 -0.3633 -1.0276 0.0005 20 1 1.7162 -0.1841 2.1418 21 1 1.6456 -1.7378 1.2737 22 1 3.8050 -2.5666 -0.4138 23 1 5.2471 -1.5391 -0.6180 24 1 3.5987 -1.2122 -2.4689 25 1 3.8475 0.2777 -1.5274 26 1 2.8479 -3.8764 -2.9218 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069760919.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:25 Heat of formation + Delta-G solvation = 15.999996 kcal Electronic energy + Delta-G solvation = -10309.555365 eV Core-core repulsion = 8514.901125 eV Total energy + Delta-G solvation = -1794.654240 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 187.073 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -36.92202 -32.62136 -30.96967 -28.47265 -26.39543 -24.03497 -21.64350 -19.62125 -16.60520 -15.59617 -14.98718 -14.18071 -13.66269 -13.30723 -13.07817 -12.53704 -11.75656 -11.49638 -11.37545 -11.03414 -10.91211 -10.80000 -10.30642 -10.09605 -9.97819 -9.62603 -8.92556 -8.43841 -7.11602 -6.58751 -5.88705 -3.34383 2.78306 3.32910 3.40677 3.41001 3.49609 4.42279 5.24103 5.27923 5.76324 6.00247 6.07775 6.22509 6.28922 6.38983 6.45993 6.54279 6.65520 6.87617 7.06339 7.32484 7.41702 7.76587 8.37861 9.12709 9.74954 10.27818 11.18881 Molecular weight = 187.07amu Principal moments of inertia in cm(-1) A = 0.051122 B = 0.016595 C = 0.013576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 547.578574 B = 1686.831033 C = 2061.894476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.170 3.830 3 H 0.042 0.958 4 C -0.082 4.082 5 S -0.337 6.337 6 C -0.070 4.070 7 C 0.172 3.828 8 N -0.590 5.590 9 C -0.259 4.259 10 H 0.073 0.927 11 C 0.005 3.995 12 N -0.900 5.900 13 Si 0.904 3.096 14 H -0.287 1.287 15 H -0.292 1.292 16 H -0.279 1.279 17 H 0.040 0.960 18 H 0.057 0.943 19 H 0.062 0.938 20 H 0.082 0.918 21 H 0.077 0.923 22 H 0.107 0.893 23 H 0.075 0.925 24 H 0.096 0.904 25 H 0.014 0.986 26 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.687 3.588 3.124 4.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.061 3.939 3 H 0.060 0.940 4 C -0.232 4.232 5 S -0.111 6.111 6 C -0.219 4.219 7 C 0.044 3.956 8 N -0.313 5.313 9 C -0.389 4.389 10 H 0.091 0.909 11 C -0.194 4.194 12 N -0.544 5.544 13 Si 0.734 3.266 14 H -0.214 1.214 15 H -0.218 1.218 16 H -0.204 1.204 17 H 0.059 0.941 18 H 0.076 0.924 19 H 0.081 0.919 20 H 0.100 0.900 21 H 0.096 0.904 22 H 0.125 0.875 23 H 0.094 0.906 24 H 0.114 0.886 25 H 0.032 0.968 26 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 0.133 3.778 3.827 5.379 hybrid contribution -1.181 -0.978 -1.523 2.161 sum -1.047 2.799 2.304 3.774 Atomic orbital electron populations 1.21828 0.95331 1.02193 0.99921 1.20618 0.93409 0.94206 0.85656 0.94012 1.23948 0.92409 1.04507 1.02368 1.86050 1.10620 1.83488 1.30897 1.24025 1.01679 1.04456 0.91753 1.20744 0.82709 0.94251 0.97874 1.44126 1.02541 1.62421 1.22202 1.19282 0.95963 1.06303 1.17329 0.90911 1.25100 0.98190 0.95463 1.00662 1.69978 1.27037 1.18212 1.39219 0.86272 0.79808 0.77405 0.83158 1.21400 1.21805 1.20427 0.94069 0.92406 0.91866 0.90006 0.90431 0.87477 0.90610 0.88629 0.96802 0.93539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.49 7.91 37.16 0.29 -2.20 15 2 C 0.17 3.57 3.33 -67.88 -0.23 3.34 15 3 H 0.04 0.87 8.14 -51.93 -0.42 0.45 15 4 C -0.08 -1.64 5.94 37.28 0.22 -1.42 15 5 S -0.34 -7.06 22.31 -107.50 -2.40 -9.46 15 6 C -0.07 -1.56 6.45 37.28 0.24 -1.32 15 7 C 0.17 4.08 5.36 -3.98 -0.02 4.06 15 8 N -0.59 -14.44 2.80 -165.57 -0.46 -14.91 15 9 C -0.26 -6.77 8.43 -15.06 -0.13 -6.90 15 10 H 0.07 1.86 6.11 -52.49 -0.32 1.54 15 11 C 0.00 0.12 4.84 -17.43 -0.08 0.04 15 12 N -0.90 -24.65 9.99 55.49 0.55 -24.09 15 13 Si 0.90 21.06 29.59 -169.99 -5.03 16.03 15 14 H -0.29 -6.72 7.11 56.52 0.40 -6.32 15 15 H -0.29 -6.92 7.11 56.52 0.40 -6.52 15 16 H -0.28 -6.40 7.11 56.52 0.40 -5.99 15 17 H 0.04 0.63 8.14 -51.92 -0.42 0.21 15 18 H 0.06 1.08 7.30 -51.93 -0.38 0.70 15 19 H 0.06 1.26 7.61 -51.93 -0.40 0.87 15 20 H 0.08 1.42 8.14 -51.93 -0.42 1.00 15 21 H 0.08 1.69 8.14 -51.93 -0.42 1.26 15 22 H 0.11 2.71 6.96 -51.93 -0.36 2.35 15 23 H 0.08 1.55 8.14 -51.93 -0.42 1.13 15 24 H 0.10 2.48 6.01 -51.93 -0.31 2.17 15 25 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 15 26 H 0.25 6.82 8.31 -40.82 -0.34 6.48 15 LS Contribution 219.43 15.07 3.31 3.31 Total: -1.00 -27.10 219.43 -7.17 -34.28 By element: Atomic # 1 Polarization: 2.67 SS G_CDS: -3.44 Total: -0.77 kcal Atomic # 6 Polarization: -4.69 SS G_CDS: 0.30 Total: -4.39 kcal Atomic # 7 Polarization: -39.09 SS G_CDS: 0.09 Total: -39.00 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.03 Total: 16.03 kcal Atomic # 16 Polarization: -7.06 SS G_CDS: -2.40 Total: -9.46 kcal Total LS contribution 3.31 Total: 3.31 kcal Total: -27.10 -7.17 -34.28 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069760919.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.277 kcal (2) G-P(sol) polarization free energy of solvation -27.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.277 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds