Wall clock time and date at job start Sun Mar 29 2020 21:49:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.46278 * 2 1 4 4 C 1.53236 * 109.47290 * 119.99345 * 2 1 3 5 5 S 1.81736 * 108.91200 * 177.59165 * 4 2 1 6 6 C 1.81782 * 102.29137 * 305.64435 * 5 4 2 7 7 C 1.53239 * 108.90335 * 54.35705 * 6 5 4 8 8 N 1.46378 * 109.46492 * 240.01552 * 2 1 3 9 9 C 1.36934 * 119.64798 * 354.92352 * 8 2 1 10 10 H 1.07994 * 120.00250 * 29.85302 * 9 8 2 11 11 C 1.38817 * 120.00104 * 209.84786 * 9 8 2 12 12 N 1.31626 * 119.99693 * 17.53575 * 11 9 8 13 13 Si 1.86797 * 120.00235 * 197.53307 * 11 9 8 14 14 H 1.48498 * 109.47335 * 90.00068 * 13 11 9 15 15 H 1.48494 * 109.47088 * 210.00376 * 13 11 9 16 16 H 1.48500 * 109.47073 * 329.99932 * 13 11 9 17 17 H 1.09007 * 109.47044 * 300.00470 * 1 2 3 18 18 H 1.08997 * 109.47485 * 60.00377 * 1 2 3 19 19 H 1.08998 * 109.47038 * 180.02562 * 1 2 3 20 20 H 1.09001 * 109.58339 * 297.45646 * 4 2 1 21 21 H 1.09000 * 109.57833 * 57.72900 * 4 2 1 22 22 H 1.08996 * 109.46556 * 294.56343 * 6 5 4 23 23 H 1.09001 * 109.58991 * 174.21585 * 6 5 4 24 24 H 1.09002 * 109.46747 * 182.41839 * 7 6 5 25 25 H 1.08995 * 109.46782 * 62.42165 * 7 6 5 26 26 H 0.96997 * 119.99477 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0408 -0.7222 1.2512 5 16 3.8566 -0.7761 1.2002 6 6 4.1757 -1.5416 -0.4175 7 6 3.4488 -0.7363 -1.4998 8 7 2.0177 -0.6897 -1.1954 9 6 1.1258 -1.2975 -2.0381 10 1 0.1235 -0.9076 -2.1360 11 6 1.5100 -2.4149 -2.7667 12 7 2.5793 -3.0958 -2.4124 13 14 0.5095 -2.9523 -4.2498 14 1 1.0335 -2.2850 -5.4685 15 1 0.6122 -4.4251 -4.4089 16 1 -0.9126 -2.5739 -4.0509 17 1 -0.3633 0.5139 0.8900 18 1 -0.3634 0.5137 -0.8900 19 1 -0.3633 -1.0276 0.0005 20 1 1.7162 -0.1841 2.1418 21 1 1.6456 -1.7378 1.2737 22 1 3.8050 -2.5666 -0.4138 23 1 5.2471 -1.5391 -0.6180 24 1 3.5987 -1.2122 -2.4689 25 1 3.8475 0.2777 -1.5274 26 1 2.8479 -3.8764 -2.9218 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069760919.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:25 Heat of formation + Delta-G solvation = 0.803347 kcal Electronic energy + Delta-G solvation = -10310.214341 eV Core-core repulsion = 8514.901125 eV Total energy + Delta-G solvation = -1795.313216 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 187.073 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -38.71843 -34.44683 -32.83923 -30.33522 -27.97693 -25.97065 -23.44852 -21.40831 -18.48068 -17.43022 -16.73996 -15.97849 -15.52306 -15.02848 -14.86151 -14.26941 -13.53892 -13.25314 -13.01957 -12.80445 -12.73911 -12.51823 -12.06813 -11.87504 -11.81235 -11.41026 -10.78086 -10.31314 -8.94358 -8.38943 -7.88048 -5.35727 1.10670 1.47489 1.50288 1.57074 1.77379 2.51042 3.28002 3.49309 4.10301 4.38677 4.49097 4.53183 4.58133 4.70265 4.77360 4.85939 5.04334 5.27424 5.38293 5.49691 5.56629 5.74267 6.40818 7.14687 7.83302 8.31662 9.17477 Molecular weight = 187.07amu Principal moments of inertia in cm(-1) A = 0.051122 B = 0.016595 C = 0.013576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 547.578574 B = 1686.831033 C = 2061.894476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.162 3.838 3 H 0.051 0.949 4 C -0.077 4.077 5 S -0.320 6.320 6 C -0.065 4.065 7 C 0.174 3.826 8 N -0.606 5.606 9 C -0.264 4.264 10 H 0.077 0.923 11 C -0.043 4.043 12 N -0.923 5.923 13 Si 0.961 3.039 14 H -0.288 1.288 15 H -0.299 1.299 16 H -0.270 1.270 17 H 0.079 0.921 18 H 0.053 0.947 19 H 0.044 0.956 20 H 0.117 0.883 21 H 0.057 0.943 22 H 0.075 0.925 23 H 0.091 0.909 24 H 0.069 0.931 25 H 0.024 0.976 26 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.367 4.579 3.825 6.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.054 3.946 3 H 0.068 0.932 4 C -0.227 4.227 5 S -0.094 6.094 6 C -0.215 4.215 7 C 0.047 3.953 8 N -0.329 5.329 9 C -0.394 4.394 10 H 0.094 0.906 11 C -0.239 4.239 12 N -0.569 5.569 13 Si 0.791 3.209 14 H -0.215 1.215 15 H -0.226 1.226 16 H -0.195 1.195 17 H 0.097 0.903 18 H 0.072 0.928 19 H 0.063 0.937 20 H 0.135 0.865 21 H 0.076 0.924 22 H 0.094 0.906 23 H 0.109 0.891 24 H 0.087 0.913 25 H 0.042 0.958 26 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -0.557 4.789 4.544 6.625 hybrid contribution -0.967 -1.227 -1.685 2.298 sum -1.525 3.562 2.859 4.815 Atomic orbital electron populations 1.21746 0.93502 1.01481 1.01646 1.20829 0.94996 0.94069 0.84684 0.93164 1.23947 0.91652 1.03713 1.03431 1.85959 1.11371 1.82882 1.29158 1.23786 1.02348 1.02526 0.92849 1.20635 0.83104 0.94492 0.97097 1.44355 1.02515 1.62533 1.23528 1.19536 0.96294 1.06016 1.17549 0.90578 1.25756 0.99367 0.95924 1.02888 1.70122 1.28373 1.18447 1.39913 0.85358 0.78993 0.76296 0.80289 1.21520 1.22586 1.19494 0.90263 0.92792 0.93709 0.86483 0.92414 0.90643 0.89084 0.91324 0.95804 0.94192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.34 7.91 71.98 0.57 -3.77 15 2 C 0.16 6.46 3.33 45.09 0.15 6.61 15 3 H 0.05 1.95 8.14 -2.39 -0.02 1.93 15 4 C -0.08 -2.91 5.94 72.06 0.43 -2.49 15 5 S -0.32 -12.80 22.31 -56.49 -1.26 -14.06 15 6 C -0.07 -2.90 6.45 72.06 0.47 -2.44 15 7 C 0.17 8.26 5.36 86.48 0.46 8.72 15 8 N -0.61 -29.21 2.80 -677.73 -1.90 -31.11 15 9 C -0.26 -13.67 8.43 84.04 0.71 -12.96 15 10 H 0.08 3.82 6.11 -2.91 -0.02 3.81 15 11 C -0.04 -2.29 4.84 84.86 0.41 -1.88 15 12 N -0.92 -51.34 9.99 21.65 0.22 -51.13 15 13 Si 0.96 43.43 29.59 68.60 2.03 45.46 15 14 H -0.29 -12.96 7.11 99.48 0.71 -12.26 15 15 H -0.30 -13.76 7.11 99.48 0.71 -13.05 15 16 H -0.27 -11.69 7.11 99.48 0.71 -10.98 15 17 H 0.08 2.14 8.14 -2.38 -0.02 2.12 15 18 H 0.05 1.90 7.30 -2.39 -0.02 1.88 15 19 H 0.04 1.71 7.61 -2.39 -0.02 1.69 15 20 H 0.12 3.61 8.14 -2.39 -0.02 3.59 15 21 H 0.06 2.42 8.14 -2.39 -0.02 2.40 15 22 H 0.07 3.86 6.96 -2.39 -0.02 3.85 15 23 H 0.09 3.68 8.14 -2.39 -0.02 3.66 15 24 H 0.07 3.62 6.01 -2.39 -0.01 3.61 15 25 H 0.02 1.07 8.14 -2.39 -0.02 1.05 15 26 H 0.25 13.60 8.31 -92.71 -0.77 12.83 15 Total: -1.00 -56.35 219.43 3.43 -52.92 By element: Atomic # 1 Polarization: 4.97 SS G_CDS: 1.15 Total: 6.12 kcal Atomic # 6 Polarization: -11.40 SS G_CDS: 3.20 Total: -8.21 kcal Atomic # 7 Polarization: -80.55 SS G_CDS: -1.68 Total: -82.23 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Atomic # 16 Polarization: -12.80 SS G_CDS: -1.26 Total: -14.06 kcal Total: -56.35 3.43 -52.92 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069760919.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.725 kcal (2) G-P(sol) polarization free energy of solvation -56.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.922 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds