Wall clock time and date at job start Sun Mar 29 2020 21:36:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 119.99853 * 2 1 4 4 H 1.48498 * 109.47447 * 270.00506 * 3 2 1 5 5 H 1.48500 * 109.46988 * 30.00703 * 3 2 1 6 6 H 1.48497 * 109.46965 * 150.00106 * 3 2 1 7 7 C 1.37875 * 119.99974 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00395 * 359.97438 * 7 2 1 9 9 C 1.50703 * 119.99666 * 179.97438 * 7 2 1 10 10 N 1.46904 * 109.47002 * 179.97438 * 9 7 2 11 11 C 1.46898 * 111.00103 * 179.97438 * 10 9 7 12 12 H 1.09005 * 109.51797 * 35.12806 * 11 10 9 13 13 C 1.53176 * 109.57251 * 155.28096 * 11 10 9 14 14 C 1.53181 * 109.03564 * 176.91703 * 13 11 10 15 15 C 1.53096 * 109.16280 * 303.02405 * 14 13 11 16 16 O 1.42905 * 109.41382 * 57.60845 * 15 14 13 17 17 C 1.42902 * 114.09583 * 298.83698 * 16 15 14 18 18 H 0.96999 * 120.00006 * 359.97438 * 1 2 3 19 19 H 1.09002 * 109.47199 * 59.99933 * 9 7 2 20 20 H 1.08997 * 109.47444 * 299.99566 * 9 7 2 21 21 H 1.00898 * 110.99805 * 56.04490 * 10 9 7 22 22 H 1.09005 * 109.54225 * 57.05325 * 13 11 10 23 23 H 1.08991 * 109.54673 * 296.78543 * 13 11 10 24 24 H 1.08998 * 109.52547 * 183.11606 * 14 13 11 25 25 H 1.09004 * 109.52249 * 62.92485 * 14 13 11 26 26 H 1.08996 * 109.47593 * 177.59033 * 15 14 13 27 27 H 1.09001 * 109.48107 * 297.61277 * 15 14 13 28 28 H 1.09003 * 109.47624 * 181.14087 * 17 16 15 29 29 H 1.08998 * 109.47961 * 301.16646 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 7 4.0013 -2.5790 -0.0010 11 6 5.4697 -2.6181 -0.0022 12 1 5.8567 -1.7876 0.5884 13 6 5.9482 -3.9421 0.6015 14 6 7.4768 -4.0031 0.5238 15 6 7.9129 -3.8380 -0.9344 16 8 7.4092 -2.6015 -1.4438 17 6 5.9833 -2.5066 -1.4400 18 1 -0.4850 0.8400 0.0004 19 1 3.8752 -0.6803 0.8888 20 1 3.8746 -0.6800 -0.8911 21 1 3.6255 -3.0954 -0.7821 22 1 5.5212 -4.7738 0.0410 23 1 5.6334 -4.0029 1.6431 24 1 7.8227 -4.9656 0.9007 25 1 7.9044 -3.2006 1.1249 26 1 9.0015 -3.8378 -0.9904 27 1 7.5186 -4.6633 -1.5274 28 1 5.6819 -1.5471 -1.8603 29 1 5.5637 -3.3141 -2.0398 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071013559.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:04 Heat of formation + Delta-G solvation = -79.807405 kcal Electronic energy + Delta-G solvation = -11489.014532 eV Core-core repulsion = 9410.597474 eV Total energy + Delta-G solvation = -2078.417059 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.43168 -37.06644 -34.81079 -33.70837 -31.16465 -28.16348 -25.92187 -24.13304 -22.86206 -21.25104 -19.00104 -17.43888 -17.08037 -16.54558 -16.07577 -15.72358 -15.10698 -14.89138 -14.50984 -14.02280 -13.68615 -13.52402 -12.76999 -12.68982 -12.38190 -12.04916 -11.86974 -11.68244 -11.46146 -11.32461 -10.86740 -10.61847 -9.12604 -8.32399 -6.37113 1.33298 1.35276 1.46441 2.32040 2.85173 3.01908 3.48154 3.79926 3.92137 4.03028 4.18568 4.25432 4.49782 4.64817 4.70637 4.75554 4.82939 4.94229 5.05606 5.10116 5.29432 5.34544 5.49847 5.88407 6.20087 6.51185 6.61972 6.73200 7.28068 8.84279 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.069568 B = 0.009368 C = 0.008817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 402.388238 B = 2988.280509 C = 3174.922760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C 0.010 3.990 3 Si 0.949 3.051 4 H -0.265 1.265 5 H -0.279 1.279 6 H -0.253 1.253 7 C -0.530 4.530 8 H 0.039 0.961 9 C 0.175 3.825 10 N -0.677 5.677 11 C 0.050 3.950 12 H 0.065 0.935 13 C -0.106 4.106 14 C -0.148 4.148 15 C 0.051 3.949 16 O -0.402 6.402 17 C 0.040 3.960 18 H 0.268 0.732 19 H 0.022 0.978 20 H -0.012 1.012 21 H 0.339 0.661 22 H 0.068 0.932 23 H 0.065 0.935 24 H 0.099 0.901 25 H 0.066 0.934 26 H 0.113 0.887 27 H 0.059 0.941 28 H 0.078 0.922 29 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.217 -6.071 -1.366 17.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.187 4.187 3 Si 0.772 3.228 4 H -0.190 1.190 5 H -0.205 1.205 6 H -0.177 1.177 7 C -0.568 4.568 8 H 0.058 0.942 9 C 0.046 3.954 10 N -0.308 5.308 11 C -0.060 4.060 12 H 0.083 0.917 13 C -0.144 4.144 14 C -0.186 4.186 15 C -0.025 4.025 16 O -0.320 6.320 17 C -0.039 4.039 18 H 0.077 0.923 19 H 0.040 0.960 20 H 0.006 0.994 21 H 0.157 0.843 22 H 0.087 0.913 23 H 0.084 0.916 24 H 0.118 0.882 25 H 0.084 0.916 26 H 0.131 0.869 27 H 0.078 0.922 28 H 0.096 0.904 29 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 16.143 -5.884 -0.745 17.198 hybrid contribution -0.388 0.880 -0.755 1.222 sum 15.756 -5.004 -1.500 16.599 Atomic orbital electron populations 1.70044 1.08115 1.28284 1.52154 1.25849 0.95618 1.03200 0.94068 0.85690 0.79274 0.78550 0.79273 1.18961 1.20450 1.17728 1.21330 0.91282 0.93542 1.50651 0.94237 1.19793 0.93772 0.87148 0.94688 1.60510 1.05891 1.14688 1.49705 1.22292 0.88136 0.99537 0.96069 0.91714 1.21551 0.95623 0.95703 1.01521 1.22190 0.94905 1.03823 0.97673 1.22857 1.00311 0.85771 0.93529 1.87884 1.20415 1.39105 1.84567 1.23297 0.81540 1.02016 0.97041 0.92265 0.96017 0.99443 0.84326 0.91333 0.91607 0.88230 0.91569 0.86888 0.92232 0.90397 0.92127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.42 13.96 21.45 0.30 -59.12 15 2 C 0.01 0.62 5.47 84.65 0.46 1.08 15 3 Si 0.95 44.55 27.47 68.60 1.88 46.43 15 4 H -0.26 -11.86 7.11 99.48 0.71 -11.16 15 5 H -0.28 -12.76 7.11 99.48 0.71 -12.05 15 6 H -0.25 -11.27 6.54 99.48 0.65 -10.62 15 7 C -0.53 -31.02 9.87 25.60 0.25 -30.77 15 8 H 0.04 2.55 8.06 -2.91 -0.02 2.53 15 9 C 0.17 8.46 4.31 85.56 0.37 8.83 15 10 N -0.68 -27.71 6.25 -495.10 -3.09 -30.81 15 11 C 0.05 1.66 2.66 45.00 0.12 1.78 15 12 H 0.06 2.31 7.80 -2.38 -0.02 2.30 15 13 C -0.11 -2.79 5.64 30.71 0.17 -2.62 15 14 C -0.15 -2.99 6.14 30.69 0.19 -2.80 15 15 C 0.05 1.05 6.84 72.01 0.49 1.54 15 16 O -0.40 -11.47 10.77 -148.98 -1.60 -13.07 15 17 C 0.04 1.20 6.10 72.01 0.44 1.64 15 18 H 0.27 15.65 8.31 -92.71 -0.77 14.88 15 19 H 0.02 1.08 7.11 -2.39 -0.02 1.06 15 20 H -0.01 -0.57 6.91 -2.39 -0.02 -0.58 15 21 H 0.34 13.38 8.44 -89.70 -0.76 12.62 15 22 H 0.07 1.71 8.14 -2.38 -0.02 1.69 15 23 H 0.07 1.83 8.14 -2.39 -0.02 1.81 15 24 H 0.10 1.49 8.14 -2.39 -0.02 1.47 15 25 H 0.07 1.40 8.14 -2.38 -0.02 1.39 15 26 H 0.11 1.78 8.14 -2.39 -0.02 1.76 15 27 H 0.06 1.09 8.14 -2.39 -0.02 1.07 15 28 H 0.08 2.55 7.52 -2.39 -0.02 2.53 15 29 H 0.06 1.68 8.09 -2.39 -0.02 1.66 15 Total: -1.00 -65.81 237.33 0.29 -65.51 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: 0.31 Total: 12.37 kcal Atomic # 6 Polarization: -23.82 SS G_CDS: 2.50 Total: -21.32 kcal Atomic # 7 Polarization: -87.13 SS G_CDS: -2.79 Total: -89.93 kcal Atomic # 8 Polarization: -11.47 SS G_CDS: -1.60 Total: -13.07 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 1.88 Total: 46.43 kcal Total: -65.81 0.29 -65.51 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071013559.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.293 kcal (2) G-P(sol) polarization free energy of solvation -65.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds