Wall clock time and date at job start Sun Mar 29 2020 21:27:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.66611 * 2 1 4 4 C 1.50441 * 109.57291 * 120.29571 * 2 1 3 5 5 O 1.21281 * 118.48829 * 287.13768 * 4 2 1 6 6 N 1.33377 * 123.02125 * 107.11085 * 4 2 1 7 7 C 1.45643 * 124.59130 * 4.32555 * 6 4 2 8 8 C 1.53469 * 110.74105 * 337.97518 * 7 6 4 9 9 N 1.47047 * 109.56789 * 239.70304 * 2 1 3 10 10 C 1.36942 * 121.35396 * 102.89047 * 9 2 1 11 11 H 1.08000 * 120.00174 * 161.21353 * 10 9 2 12 12 C 1.38809 * 119.99752 * 341.48275 * 10 9 2 13 13 N 1.31616 * 120.00544 * 339.20127 * 12 10 9 14 14 Si 1.86803 * 119.99928 * 159.19927 * 12 10 9 15 15 H 1.48496 * 109.47119 * 89.99870 * 14 12 10 16 16 H 1.48497 * 109.47493 * 210.00386 * 14 12 10 17 17 H 1.48509 * 109.46846 * 329.99986 * 14 12 10 18 18 H 1.08997 * 109.47219 * 180.30447 * 1 2 3 19 19 H 1.09003 * 109.46751 * 300.29886 * 1 2 3 20 20 H 1.09000 * 109.47413 * 60.29566 * 1 2 3 21 21 H 0.97005 * 117.70281 * 184.29822 * 6 4 2 22 22 H 1.08997 * 109.22308 * 98.43241 * 7 6 4 23 23 H 1.09006 * 109.21645 * 217.76716 * 7 6 4 24 24 H 1.09001 * 109.84994 * 287.32116 * 8 7 6 25 25 H 1.08993 * 109.84588 * 166.50529 * 8 7 6 26 26 H 0.97001 * 120.00558 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8968 1.0265 0.0000 4 6 2.0339 -0.7151 1.2239 5 8 1.9318 -0.1636 2.2992 6 7 2.5875 -1.9278 1.1809 7 6 2.8568 -2.6708 -0.0425 8 6 1.9678 -2.1706 -1.1891 9 7 2.0225 -0.6990 -1.1963 10 6 2.5069 -0.0093 -2.2756 11 1 3.1310 -0.5103 -3.0008 12 6 2.2004 1.3351 -2.4347 13 7 1.1542 1.8485 -1.8230 14 14 3.2729 2.4159 -3.5169 15 1 2.7571 2.3891 -4.9092 16 1 3.2461 3.8099 -3.0059 17 1 4.6682 1.9078 -3.4961 18 1 -0.3633 -1.0276 0.0055 19 1 -0.3633 0.5185 0.8873 20 1 -0.3634 0.5092 -0.8926 21 1 2.8278 -2.3440 2.0235 22 1 3.9042 -2.5438 -0.3163 23 1 2.6574 -3.7287 0.1289 24 1 0.9406 -2.4997 -1.0316 25 1 2.3368 -2.5571 -2.1391 26 1 0.9398 2.7880 -1.9344 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082403857.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:27:32 Heat of formation + Delta-G solvation = -10.829933 kcal Electronic energy + Delta-G solvation = -11773.463871 eV Core-core repulsion = 9659.923468 eV Total energy + Delta-G solvation = -2113.540403 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 184.095 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.31237 -35.99857 -34.09687 -31.22413 -30.07615 -27.58166 -24.38832 -22.73229 -21.88855 -18.10247 -17.25301 -16.09474 -15.60374 -14.80907 -14.36746 -13.55450 -13.45290 -12.67462 -12.53848 -11.93554 -11.42646 -11.10316 -11.04171 -10.81833 -10.51745 -10.43405 -10.07147 -9.77030 -8.91451 -8.60492 -8.43218 -6.95180 -5.88226 -3.26915 3.34567 3.43234 3.44771 3.50993 4.04014 4.41297 5.18233 5.28742 5.57957 5.67440 5.89912 5.97848 6.40092 6.55874 6.57587 6.81998 6.91052 7.21711 7.48678 7.60003 7.80610 8.07418 8.20529 8.93446 9.11960 9.68030 10.20408 11.19103 Molecular weight = 184.10amu Principal moments of inertia in cm(-1) A = 0.048918 B = 0.016109 C = 0.014363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.254731 B = 1737.727558 C = 1949.004657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.184 3.816 3 H 0.124 0.876 4 C 0.508 3.492 5 O -0.580 6.580 6 N -0.722 5.722 7 C 0.096 3.904 8 C 0.126 3.874 9 N -0.592 5.592 10 C -0.256 4.256 11 H 0.076 0.924 12 C 0.001 3.999 13 N -0.900 5.900 14 Si 0.905 3.095 15 H -0.287 1.287 16 H -0.288 1.288 17 H -0.280 1.280 18 H 0.020 0.980 19 H 0.036 0.964 20 H 0.100 0.900 21 H 0.380 0.620 22 H 0.057 0.943 23 H 0.061 0.939 24 H 0.033 0.967 25 H 0.075 0.925 26 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.607 -7.014 0.897 7.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.075 3.925 3 H 0.141 0.859 4 C 0.296 3.704 5 O -0.459 6.459 6 N -0.372 5.372 7 C -0.031 4.031 8 C -0.001 4.001 9 N -0.316 5.316 10 C -0.385 4.385 11 H 0.094 0.906 12 C -0.197 4.197 13 N -0.544 5.544 14 Si 0.734 3.266 15 H -0.214 1.214 16 H -0.214 1.214 17 H -0.206 1.206 18 H 0.039 0.961 19 H 0.056 0.944 20 H 0.118 0.882 21 H 0.213 0.787 22 H 0.075 0.925 23 H 0.080 0.920 24 H 0.051 0.949 25 H 0.093 0.907 26 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 1.447 -6.425 1.174 6.690 hybrid contribution 0.648 0.272 -0.246 0.744 sum 2.095 -6.153 0.929 6.566 Atomic orbital electron populations 1.22051 0.95339 0.98806 1.03151 1.20549 0.94225 0.97436 0.80293 0.85865 1.21889 0.75253 0.80568 0.92689 1.90621 1.58350 1.65444 1.31507 1.45454 1.63688 1.18789 1.09314 1.22016 1.00546 0.94187 0.86319 1.21333 0.96457 0.86434 0.95892 1.44391 1.73463 0.99229 1.14554 1.19190 1.24110 0.92747 1.02430 0.90637 1.24914 0.96919 0.98372 0.99492 1.69972 1.24316 1.13502 1.46633 0.86261 0.80486 0.80083 0.79737 1.21386 1.21430 1.20555 0.96063 0.94446 0.88168 0.78692 0.92485 0.92024 0.94928 0.90669 0.93254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.14 9.02 37.16 0.34 -2.81 15 2 C 0.18 4.54 2.28 -68.91 -0.16 4.39 15 3 H 0.12 3.47 6.19 -51.93 -0.32 3.15 15 4 C 0.51 11.70 7.10 -11.73 -0.08 11.61 15 5 O -0.58 -14.75 17.80 5.56 0.10 -14.65 15 6 N -0.72 -13.42 5.42 -61.07 -0.33 -13.75 15 7 C 0.10 1.55 7.35 -4.26 -0.03 1.52 15 8 C 0.13 2.40 6.50 -3.38 -0.02 2.38 15 9 N -0.59 -14.26 2.67 -165.81 -0.44 -14.71 15 10 C -0.26 -6.69 9.72 -15.06 -0.15 -6.83 15 11 H 0.08 1.89 7.90 -52.49 -0.41 1.48 15 12 C 0.00 0.04 4.93 -17.43 -0.09 -0.05 15 13 N -0.90 -24.84 9.17 55.49 0.51 -24.34 15 14 Si 0.90 21.09 29.60 -169.99 -5.03 16.06 15 15 H -0.29 -6.65 7.11 56.52 0.40 -6.25 15 16 H -0.29 -6.84 7.11 56.52 0.40 -6.44 15 17 H -0.28 -6.46 7.11 56.52 0.40 -6.05 15 18 H 0.02 0.45 7.49 -51.93 -0.39 0.06 15 19 H 0.04 0.84 8.14 -51.93 -0.42 0.42 15 20 H 0.10 2.56 6.44 -51.93 -0.33 2.22 15 21 H 0.38 6.14 8.80 -40.82 -0.36 5.78 15 22 H 0.06 0.91 8.14 -51.93 -0.42 0.49 15 23 H 0.06 0.77 8.14 -51.93 -0.42 0.34 15 24 H 0.03 0.62 7.49 -51.93 -0.39 0.23 15 25 H 0.07 1.32 7.95 -51.93 -0.41 0.90 15 26 H 0.26 6.93 8.31 -40.82 -0.34 6.59 15 LS Contribution 217.89 15.07 3.28 3.28 Total: -1.00 -29.85 217.89 -5.13 -34.98 By element: Atomic # 1 Polarization: 5.94 SS G_CDS: -3.02 Total: 2.92 kcal Atomic # 6 Polarization: 10.39 SS G_CDS: -0.19 Total: 10.20 kcal Atomic # 7 Polarization: -52.53 SS G_CDS: -0.26 Total: -52.79 kcal Atomic # 8 Polarization: -14.75 SS G_CDS: 0.10 Total: -14.65 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.03 Total: 16.06 kcal Total LS contribution 3.28 Total: 3.28 kcal Total: -29.85 -5.13 -34.98 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082403857.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.150 kcal (2) G-P(sol) polarization free energy of solvation -29.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds