Wall clock time and date at job start Sun Mar 29 2020 21:52:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39459 * 119.73547 * 260.28042 * 3 2 1 5 5 C 1.38496 * 119.05108 * 179.75211 * 4 3 2 6 6 C 1.50697 * 120.74899 * 180.28031 * 5 4 3 7 7 C 1.50701 * 109.47136 * 270.24013 * 6 5 4 8 8 H 1.08000 * 119.99943 * 359.97438 * 7 6 5 9 9 C 1.37876 * 119.99920 * 179.97438 * 7 6 5 10 10 N 1.31509 * 120.00077 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 119.99920 * 179.97438 * 9 7 6 12 12 H 1.48495 * 109.47364 * 59.99682 * 11 9 7 13 13 H 1.48500 * 109.46956 * 180.02562 * 11 9 7 14 14 H 1.48506 * 109.46790 * 300.00012 * 11 9 7 15 15 C 1.38695 * 118.50318 * 0.51603 * 5 4 3 16 16 C 1.38471 * 119.38447 * 359.74432 * 15 5 4 17 17 N 1.31586 * 120.91270 * 359.97438 * 16 15 5 18 18 H 1.07997 * 120.47560 * 359.97438 * 4 3 2 19 19 H 1.08997 * 109.46966 * 30.23622 * 6 5 4 20 20 H 1.08996 * 109.47092 * 150.23736 * 6 5 4 21 21 H 0.97002 * 120.00250 * 180.02562 * 10 9 7 22 22 H 1.08000 * 120.31024 * 179.77388 * 15 5 4 23 23 H 1.07995 * 119.54422 * 180.02562 * 16 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2596 0.2054 1.1936 5 6 4.6444 0.1981 1.1782 6 6 5.4302 0.4091 2.4466 7 6 5.6919 1.8810 2.6365 8 1 5.3261 2.5924 1.9109 9 6 6.3982 2.3193 3.7365 10 7 6.8440 1.4529 4.6197 11 14 6.7231 4.1438 3.9715 12 1 5.4306 4.8691 4.0627 13 1 7.4974 4.3517 5.2215 14 1 7.5004 4.6609 2.8165 15 6 5.2918 -0.0029 -0.0319 16 6 4.5419 -0.1943 -1.1801 17 7 3.2267 -0.1884 -1.1373 18 1 2.7230 0.3638 2.1173 19 1 4.8603 0.0290 3.2945 20 1 6.3791 -0.1229 2.3789 21 1 7.3406 1.7613 5.3938 22 1 6.3708 -0.0105 -0.0781 23 1 5.0433 -0.3515 -2.1236 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000149171647.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:07 Heat of formation + Delta-G solvation = 35.768510 kcal Electronic energy + Delta-G solvation = -10221.523873 eV Core-core repulsion = 8226.856998 eV Total energy + Delta-G solvation = -1994.666875 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 188.064 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -41.22789 -37.70788 -35.90515 -33.91355 -32.49867 -29.65609 -25.95043 -25.21637 -23.26240 -19.55215 -18.48080 -17.53979 -16.93585 -16.47962 -15.67696 -15.55881 -14.45401 -14.34307 -14.18438 -13.95277 -13.67250 -13.44572 -12.80388 -12.67950 -12.35858 -11.92776 -11.72029 -10.59215 -10.56446 -10.31310 -10.06054 -8.21245 -6.32798 -0.34697 0.36380 1.40981 1.44973 1.45601 1.53596 1.81860 2.41822 2.48919 2.98761 3.12975 3.78312 4.02564 4.09514 4.26440 4.48126 4.75425 5.10979 5.18438 5.35914 5.66555 5.73752 5.76840 6.13071 6.22922 6.79473 6.81321 7.36456 8.88608 Molecular weight = 188.06amu Principal moments of inertia in cm(-1) A = 0.048195 B = 0.009327 C = 0.008701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 580.837364 B = 3001.302007 C = 3217.356982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.433 5.433 2 C 0.294 3.706 3 C 0.169 3.831 4 C -0.120 4.120 5 C -0.016 4.016 6 C 0.053 3.947 7 C -0.532 4.532 8 H 0.059 0.941 9 C 0.011 3.989 10 N -0.925 5.925 11 Si 0.959 3.041 12 H -0.272 1.272 13 H -0.284 1.284 14 H -0.266 1.266 15 C -0.140 4.140 16 C 0.115 3.885 17 N -0.481 5.481 18 H 0.140 0.860 19 H 0.015 0.985 20 H 0.024 0.976 21 H 0.266 0.734 22 H 0.157 0.843 23 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.782 -1.794 -7.976 8.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.110 5.110 2 C -0.022 4.022 3 C 0.033 3.967 4 C -0.143 4.143 5 C -0.024 4.024 6 C 0.016 3.984 7 C -0.570 4.570 8 H 0.077 0.923 9 C -0.188 4.188 10 N -0.565 5.565 11 Si 0.784 3.216 12 H -0.197 1.197 13 H -0.210 1.210 14 H -0.191 1.191 15 C -0.160 4.160 16 C -0.044 4.044 17 N -0.192 5.192 18 H 0.158 0.842 19 H 0.033 0.967 20 H 0.043 0.957 21 H 0.075 0.925 22 H 0.174 0.826 23 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -2.924 -1.943 -8.582 9.272 hybrid contribution 1.135 0.960 1.380 2.029 sum -1.788 -0.983 -7.202 7.486 Atomic orbital electron populations 1.81178 1.12208 1.09247 1.08343 1.25134 0.91795 0.92860 0.92425 1.16215 0.85431 1.04178 0.90889 1.21937 0.94710 0.99419 0.98200 1.20818 0.93308 0.90654 0.97596 1.18187 0.94452 0.96433 0.89339 1.21305 1.35261 0.92435 1.08018 0.92296 1.25796 0.95302 1.02170 0.95519 1.70037 1.37778 1.35977 1.12675 0.85590 0.78450 0.79886 0.77706 1.19722 1.20957 1.19068 1.22590 1.03153 0.98092 0.92182 1.23266 0.87339 0.94160 0.99673 1.67507 1.11775 1.13244 1.26683 0.84171 0.96701 0.95739 0.92516 0.82558 0.77747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -14.81 18.54 19.00 0.35 -14.46 14 2 C 0.29 9.50 15.53 88.33 1.37 10.87 14 3 C 0.17 5.37 6.58 40.54 0.27 5.63 14 4 C -0.12 -4.05 9.50 22.63 0.21 -3.84 14 5 C -0.02 -0.58 5.10 -19.69 -0.10 -0.68 14 6 C 0.05 2.43 5.15 29.10 0.15 2.58 14 7 C -0.53 -27.21 9.09 25.60 0.23 -26.97 14 8 H 0.06 2.94 7.74 -2.91 -0.02 2.92 14 9 C 0.01 0.60 5.46 84.66 0.46 1.06 14 10 N -0.93 -51.76 13.29 21.45 0.28 -51.47 14 11 Si 0.96 41.33 29.54 68.60 2.03 43.35 14 12 H -0.27 -11.50 7.11 99.48 0.71 -10.80 14 13 H -0.28 -12.09 7.11 99.48 0.71 -11.38 14 14 H -0.27 -11.00 7.11 99.48 0.71 -10.29 14 15 C -0.14 -4.07 9.82 22.43 0.22 -3.85 14 16 C 0.11 2.83 11.18 84.79 0.95 3.78 14 17 N -0.48 -14.26 10.28 -189.21 -1.94 -16.20 14 18 H 0.14 4.63 8.06 -2.91 -0.02 4.61 14 19 H 0.01 0.73 8.10 -2.39 -0.02 0.71 14 20 H 0.02 1.17 8.10 -2.39 -0.02 1.15 14 21 H 0.27 14.12 8.31 -92.71 -0.77 13.35 14 22 H 0.16 4.02 8.06 -2.91 -0.02 4.00 14 23 H 0.21 3.15 8.06 -2.91 -0.02 3.13 14 Total: -1.00 -58.50 226.79 5.70 -52.80 By element: Atomic # 1 Polarization: -3.82 SS G_CDS: 1.22 Total: -2.60 kcal Atomic # 6 Polarization: -15.19 SS G_CDS: 3.77 Total: -11.42 kcal Atomic # 7 Polarization: -80.82 SS G_CDS: -1.31 Total: -82.13 kcal Atomic # 14 Polarization: 41.33 SS G_CDS: 2.03 Total: 43.35 kcal Total: -58.50 5.70 -52.80 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000149171647.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.568 kcal (2) G-P(sol) polarization free energy of solvation -58.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.800 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds