Wall clock time and date at job start Sun Mar 29 2020 21:36:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00348 * 2 1 4 4 H 1.48494 * 109.47197 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46937 * 299.99866 * 3 2 1 6 6 H 1.48506 * 109.47188 * 59.99283 * 3 2 1 7 7 C 1.37882 * 119.99898 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00493 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99681 * 0.02562 * 7 2 1 10 10 N 1.46902 * 109.46821 * 179.97438 * 9 7 2 11 11 C 1.46846 * 111.00121 * 294.21263 * 10 9 7 12 12 C 1.53030 * 109.52435 * 174.16395 * 11 10 9 13 13 C 1.53203 * 109.30370 * 59.17688 * 12 11 10 14 14 C 1.53123 * 109.11533 * 302.37368 * 13 12 11 15 15 C 1.46856 * 110.99619 * 170.00380 * 10 9 7 16 16 H 1.09000 * 109.46462 * 65.82793 * 15 10 9 17 17 O 1.42896 * 109.46143 * 305.85388 * 15 10 9 18 18 H 0.97003 * 120.00020 * 0.02562 * 1 2 3 19 19 H 1.08998 * 109.46802 * 60.00477 * 9 7 2 20 20 H 1.08994 * 109.47523 * 299.99780 * 9 7 2 21 21 H 1.09004 * 109.46012 * 294.17710 * 11 10 9 22 22 H 1.08994 * 109.46057 * 54.14289 * 11 10 9 23 23 H 1.08997 * 109.50569 * 179.12357 * 12 11 10 24 24 H 1.09005 * 109.50161 * 299.23539 * 12 11 10 25 25 H 1.08994 * 109.57907 * 182.46159 * 13 12 11 26 26 H 1.08997 * 109.51203 * 62.24423 * 13 12 11 27 27 H 1.09002 * 109.50371 * 297.67165 * 14 13 12 28 28 H 1.09003 * 109.50070 * 177.59325 * 14 13 12 29 29 H 0.96700 * 113.99710 * 179.97438 * 17 15 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7091 1.3462 0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 7 2.2055 -3.6158 0.0005 11 6 2.9749 -3.6504 -1.2498 12 6 4.0546 -4.7308 -1.1561 13 6 3.3917 -6.0889 -0.9051 14 6 2.5576 -6.0106 0.3767 15 6 1.5211 -4.8931 0.2385 16 1 0.8600 -5.1127 -0.5998 17 8 0.7529 -4.8050 1.4402 18 1 -0.4850 0.8401 -0.0004 19 1 0.6247 -2.5570 -0.8897 20 1 0.6239 -2.5567 0.8902 21 1 2.3068 -3.8758 -2.0811 22 1 3.4446 -2.6807 -1.4141 23 1 4.6154 -4.7668 -2.0901 24 1 4.7312 -4.4987 -0.3336 25 1 4.1590 -6.8550 -0.7940 26 1 2.7448 -6.3393 -1.7458 27 1 3.2106 -5.7986 1.2234 28 1 2.0488 -6.9609 0.5384 29 1 0.2724 -5.6148 1.6600 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000199557854.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:42 Heat of formation + Delta-G solvation = -53.866848 kcal Electronic energy + Delta-G solvation = -11772.368103 eV Core-core repulsion = 9695.075912 eV Total energy + Delta-G solvation = -2077.292192 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -38.61324 -35.14409 -33.55968 -31.75726 -29.23950 -26.83937 -23.73655 -22.26287 -21.02058 -19.25488 -16.83508 -16.25549 -15.37919 -14.39160 -14.13179 -13.86708 -13.45799 -12.92265 -12.54333 -12.13857 -11.99929 -11.23131 -11.15708 -10.79983 -10.62457 -10.50352 -10.30177 -10.07334 -9.79376 -9.32913 -9.03568 -8.34954 -7.18492 -5.94775 -3.95634 3.35397 3.42308 3.47437 4.36982 4.53989 5.09707 5.13644 5.29233 5.40392 5.49135 5.64041 5.68818 5.94895 6.03386 6.19312 6.23443 6.37772 6.47416 6.72680 6.73918 7.27847 7.42695 7.85869 8.05019 8.22650 8.45962 8.69043 9.12578 9.67451 11.16328 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.055412 B = 0.011654 C = 0.010155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 505.184512 B = 2402.097154 C = 2756.655467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.054 3.946 3 Si 0.897 3.103 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.506 4.506 8 H 0.063 0.937 9 C 0.195 3.805 10 N -0.531 5.531 11 C 0.069 3.931 12 C -0.121 4.121 13 C -0.116 4.116 14 C -0.144 4.144 15 C 0.275 3.725 16 H 0.012 0.988 17 O -0.555 6.555 18 H 0.260 0.740 19 H -0.014 1.014 20 H 0.045 0.955 21 H 0.019 0.981 22 H 0.090 0.910 23 H 0.060 0.940 24 H 0.069 0.931 25 H 0.059 0.941 26 H 0.055 0.945 27 H 0.076 0.924 28 H 0.057 0.943 29 H 0.372 0.628 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.574 -10.717 -1.830 11.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.147 4.147 3 Si 0.725 3.275 4 H -0.197 1.197 5 H -0.212 1.212 6 H -0.210 1.210 7 C -0.544 4.544 8 H 0.081 0.919 9 C 0.071 3.929 10 N -0.259 5.259 11 C -0.059 4.059 12 C -0.159 4.159 13 C -0.154 4.154 14 C -0.182 4.182 15 C 0.126 3.874 16 H 0.030 0.970 17 O -0.358 6.358 18 H 0.069 0.931 19 H 0.004 0.996 20 H 0.063 0.937 21 H 0.038 0.962 22 H 0.108 0.892 23 H 0.079 0.921 24 H 0.087 0.913 25 H 0.078 0.922 26 H 0.074 0.926 27 H 0.095 0.905 28 H 0.076 0.924 29 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 4.988 -9.911 -1.439 11.188 hybrid contribution -0.466 0.208 -0.676 0.847 sum 4.521 -9.703 -2.115 10.911 Atomic orbital electron populations 1.69987 1.06061 1.26498 1.51301 1.24995 0.94860 0.99258 0.95609 0.86452 0.80055 0.83515 0.77447 1.19685 1.21175 1.21020 1.21231 0.93455 0.90064 1.49675 0.91901 1.19688 0.90012 0.86686 0.96545 1.61706 1.28207 1.02002 1.34027 1.21943 0.94657 0.99581 0.89714 1.21698 0.98414 0.94423 1.01352 1.21532 0.98837 0.97745 0.97257 1.22247 0.99157 0.97588 0.99204 1.21973 0.88718 0.91379 0.85330 0.97037 1.86543 1.65414 1.40102 1.43766 0.93074 0.99630 0.93660 0.96245 0.89209 0.92140 0.91251 0.92238 0.92604 0.90523 0.92423 0.78279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.77 13.29 55.43 0.74 -27.03 15 2 C 0.05 1.58 5.46 -17.82 -0.10 1.48 15 3 Si 0.90 22.25 29.54 -169.99 -5.02 17.22 15 4 H -0.27 -6.59 7.11 56.52 0.40 -6.19 15 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 15 6 H -0.28 -6.99 7.11 56.52 0.40 -6.59 15 7 C -0.51 -14.87 8.43 -34.44 -0.29 -15.16 15 8 H 0.06 1.82 7.12 -52.49 -0.37 1.44 15 9 C 0.20 5.47 4.62 -4.97 -0.02 5.44 15 10 N -0.53 -12.32 4.59 -233.76 -1.07 -13.39 15 11 C 0.07 1.39 5.30 -3.84 -0.02 1.37 15 12 C -0.12 -1.89 6.09 -26.61 -0.16 -2.05 15 13 C -0.12 -1.60 6.01 -26.56 -0.16 -1.76 15 14 C -0.14 -2.17 5.71 -26.65 -0.15 -2.33 15 15 C 0.27 5.32 3.13 -3.83 -0.01 5.31 15 16 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 15 17 O -0.55 -10.90 12.23 -35.23 -0.43 -11.33 15 18 H 0.26 7.52 8.31 -40.82 -0.34 7.18 15 19 H -0.01 -0.42 8.12 -51.93 -0.42 -0.84 15 20 H 0.05 1.40 7.10 -51.93 -0.37 1.03 15 21 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 15 22 H 0.09 1.94 6.70 -51.93 -0.35 1.59 15 23 H 0.06 0.81 8.14 -51.93 -0.42 0.39 15 24 H 0.07 1.12 8.14 -51.93 -0.42 0.70 15 25 H 0.06 0.69 8.14 -51.93 -0.42 0.27 15 26 H 0.06 0.74 8.14 -51.93 -0.42 0.32 15 27 H 0.08 1.24 8.14 -51.93 -0.42 0.81 15 28 H 0.06 0.71 8.14 -51.93 -0.42 0.29 15 29 H 0.37 4.94 9.08 45.56 0.41 5.36 15 LS Contribution 237.29 15.07 3.58 3.58 Total: -1.00 -32.93 237.29 -6.75 -39.67 By element: Atomic # 1 Polarization: 2.59 SS G_CDS: -3.61 Total: -1.02 kcal Atomic # 6 Polarization: -6.78 SS G_CDS: -0.92 Total: -7.69 kcal Atomic # 7 Polarization: -40.09 SS G_CDS: -0.34 Total: -40.43 kcal Atomic # 8 Polarization: -10.90 SS G_CDS: -0.43 Total: -11.33 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 3.58 Total: 3.58 kcal Total: -32.93 -6.75 -39.67 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000199557854.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.194 kcal (2) G-P(sol) polarization free energy of solvation -32.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds