Wall clock time and date at job start Sun Mar 29 2020 21:36:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00348 * 2 1 4 4 H 1.48494 * 109.47197 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46937 * 299.99866 * 3 2 1 6 6 H 1.48506 * 109.47188 * 59.99283 * 3 2 1 7 7 C 1.37882 * 119.99898 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00493 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99681 * 0.02562 * 7 2 1 10 10 N 1.46902 * 109.46821 * 179.97438 * 9 7 2 11 11 C 1.46846 * 111.00121 * 294.21263 * 10 9 7 12 12 C 1.53030 * 109.52435 * 174.16395 * 11 10 9 13 13 C 1.53203 * 109.30370 * 59.17688 * 12 11 10 14 14 C 1.53123 * 109.11533 * 302.37368 * 13 12 11 15 15 C 1.46856 * 110.99619 * 170.00380 * 10 9 7 16 16 H 1.09000 * 109.46462 * 65.82793 * 15 10 9 17 17 O 1.42896 * 109.46143 * 305.85388 * 15 10 9 18 18 H 0.97003 * 120.00020 * 0.02562 * 1 2 3 19 19 H 1.08998 * 109.46802 * 60.00477 * 9 7 2 20 20 H 1.08994 * 109.47523 * 299.99780 * 9 7 2 21 21 H 1.09004 * 109.46012 * 294.17710 * 11 10 9 22 22 H 1.08994 * 109.46057 * 54.14289 * 11 10 9 23 23 H 1.08997 * 109.50569 * 179.12357 * 12 11 10 24 24 H 1.09005 * 109.50161 * 299.23539 * 12 11 10 25 25 H 1.08994 * 109.57907 * 182.46159 * 13 12 11 26 26 H 1.08997 * 109.51203 * 62.24423 * 13 12 11 27 27 H 1.09002 * 109.50371 * 297.67165 * 14 13 12 28 28 H 1.09003 * 109.50070 * 177.59325 * 14 13 12 29 29 H 0.96700 * 113.99710 * 179.97438 * 17 15 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7091 1.3462 0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 7 2.2055 -3.6158 0.0005 11 6 2.9749 -3.6504 -1.2498 12 6 4.0546 -4.7308 -1.1561 13 6 3.3917 -6.0889 -0.9051 14 6 2.5576 -6.0106 0.3767 15 6 1.5211 -4.8931 0.2385 16 1 0.8600 -5.1127 -0.5998 17 8 0.7529 -4.8050 1.4402 18 1 -0.4850 0.8401 -0.0004 19 1 0.6247 -2.5570 -0.8897 20 1 0.6239 -2.5567 0.8902 21 1 2.3068 -3.8758 -2.0811 22 1 3.4446 -2.6807 -1.4141 23 1 4.6154 -4.7668 -2.0901 24 1 4.7312 -4.4987 -0.3336 25 1 4.1590 -6.8550 -0.7940 26 1 2.7448 -6.3393 -1.7458 27 1 3.2106 -5.7986 1.2234 28 1 2.0488 -6.9609 0.5384 29 1 0.2724 -5.6148 1.6600 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000199557854.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:41 Heat of formation + Delta-G solvation = -80.774437 kcal Electronic energy + Delta-G solvation = -11773.534904 eV Core-core repulsion = 9695.075912 eV Total energy + Delta-G solvation = -2078.458992 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.15350 -36.68245 -35.46120 -33.67976 -30.64615 -28.92617 -25.52485 -23.76533 -22.82301 -20.67043 -18.52907 -18.33563 -17.07398 -16.33320 -15.59664 -15.43072 -14.89072 -14.46793 -14.18220 -14.00816 -13.73488 -13.08979 -12.74315 -12.58259 -12.46719 -12.12951 -11.71871 -11.59201 -11.49841 -11.24081 -10.74325 -10.59071 -9.04013 -8.21460 -6.32660 1.39024 1.41002 1.54777 2.39135 2.92873 3.10455 3.69890 3.86330 4.06699 4.07929 4.27868 4.35338 4.57911 4.84475 4.93445 4.94970 5.06608 5.14748 5.19704 5.25376 5.35630 5.50013 5.62856 6.03333 6.26276 6.47870 6.81598 7.19631 7.37032 8.90539 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.055412 B = 0.011654 C = 0.010155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 505.184512 B = 2402.097154 C = 2756.655467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.003 4.003 3 Si 0.976 3.024 4 H -0.261 1.261 5 H -0.275 1.275 6 H -0.278 1.278 7 C -0.526 4.526 8 H 0.063 0.937 9 C 0.214 3.786 10 N -0.546 5.546 11 C 0.066 3.934 12 C -0.113 4.113 13 C -0.113 4.113 14 C -0.132 4.132 15 C 0.266 3.734 16 H 0.008 0.992 17 O -0.584 6.584 18 H 0.265 0.735 19 H -0.047 1.047 20 H 0.007 0.993 21 H 0.015 0.985 22 H 0.065 0.935 23 H 0.089 0.911 24 H 0.064 0.936 25 H 0.094 0.906 26 H 0.064 0.936 27 H 0.067 0.933 28 H 0.094 0.906 29 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.250 -11.659 -2.140 13.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.200 4.200 3 Si 0.800 3.200 4 H -0.185 1.185 5 H -0.200 1.200 6 H -0.203 1.203 7 C -0.564 4.564 8 H 0.081 0.919 9 C 0.087 3.913 10 N -0.274 5.274 11 C -0.062 4.062 12 C -0.151 4.151 13 C -0.150 4.150 14 C -0.170 4.170 15 C 0.118 3.882 16 H 0.025 0.975 17 O -0.392 6.392 18 H 0.073 0.927 19 H -0.030 1.030 20 H 0.025 0.975 21 H 0.034 0.966 22 H 0.084 0.916 23 H 0.107 0.893 24 H 0.083 0.917 25 H 0.113 0.887 26 H 0.083 0.917 27 H 0.086 0.914 28 H 0.113 0.887 29 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 6.670 -10.898 -1.749 12.897 hybrid contribution -1.053 0.443 -0.569 1.277 sum 5.616 -10.455 -2.318 12.093 Atomic orbital electron populations 1.70126 1.07945 1.27889 1.51831 1.26022 0.95824 1.03525 0.94678 0.85242 0.78904 0.78042 0.77849 1.18529 1.20031 1.20336 1.21526 0.93588 0.91147 1.50112 0.91856 1.19235 0.90109 0.88849 0.93071 1.61639 1.27450 1.02555 1.35793 1.22018 0.95424 1.00450 0.88281 1.21666 0.96830 0.93804 1.02764 1.21569 0.99542 0.97249 0.96654 1.22181 0.98021 0.97069 0.99761 1.22221 0.90008 0.90809 0.85120 0.97453 1.86482 1.66186 1.42637 1.43861 0.92650 1.02966 0.97521 0.96632 0.91603 0.89258 0.91711 0.88731 0.91719 0.91399 0.88727 0.75327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.45 13.29 21.45 0.28 -59.17 15 2 C 0.00 -0.18 5.46 84.66 0.46 0.28 15 3 Si 0.98 46.01 29.54 68.60 2.03 48.04 15 4 H -0.26 -11.76 7.11 99.48 0.71 -11.05 15 5 H -0.27 -12.43 7.11 99.48 0.71 -11.72 15 6 H -0.28 -12.76 7.11 99.48 0.71 -12.05 15 7 C -0.53 -31.82 8.43 25.60 0.22 -31.61 15 8 H 0.06 3.73 7.12 -2.91 -0.02 3.71 15 9 C 0.21 12.54 4.62 85.56 0.40 12.93 15 10 N -0.55 -25.86 4.59 -993.72 -4.56 -30.43 15 11 C 0.07 2.65 5.30 86.32 0.46 3.11 15 12 C -0.11 -3.25 6.09 30.67 0.19 -3.07 15 13 C -0.11 -2.68 6.01 30.70 0.18 -2.49 15 14 C -0.13 -3.62 5.71 30.65 0.18 -3.45 15 15 C 0.27 10.25 3.13 86.32 0.27 10.52 15 16 H 0.01 0.32 8.14 -2.39 -0.02 0.30 15 17 O -0.58 -23.14 12.23 -148.98 -1.82 -24.96 15 18 H 0.26 15.60 8.31 -92.71 -0.77 14.83 15 19 H -0.05 -2.99 8.12 -2.39 -0.02 -3.01 15 20 H 0.01 0.44 7.10 -2.39 -0.02 0.42 15 21 H 0.02 0.63 8.14 -2.38 -0.02 0.61 15 22 H 0.07 2.90 6.70 -2.39 -0.02 2.89 15 23 H 0.09 2.08 8.14 -2.39 -0.02 2.06 15 24 H 0.06 1.94 8.14 -2.38 -0.02 1.92 15 25 H 0.09 1.69 8.14 -2.39 -0.02 1.67 15 26 H 0.06 1.46 8.14 -2.39 -0.02 1.44 15 27 H 0.07 2.01 8.14 -2.39 -0.02 1.99 15 28 H 0.09 1.93 8.14 -2.39 -0.02 1.91 15 29 H 0.40 10.28 9.08 -74.06 -0.67 9.61 15 Total: -1.00 -73.49 237.29 -1.28 -74.77 By element: Atomic # 1 Polarization: 5.06 SS G_CDS: 0.45 Total: 5.51 kcal Atomic # 6 Polarization: -16.11 SS G_CDS: 2.35 Total: -13.76 kcal Atomic # 7 Polarization: -85.31 SS G_CDS: -4.28 Total: -89.59 kcal Atomic # 8 Polarization: -23.14 SS G_CDS: -1.82 Total: -24.96 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 2.03 Total: 48.04 kcal Total: -73.49 -1.28 -74.77 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000199557854.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.009 kcal (2) G-P(sol) polarization free energy of solvation -73.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds