Wall clock time and date at job start Sun Mar 29 2020 21:35:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86796 * 120.00087 * 2 1 4 4 H 1.48500 * 109.47272 * 275.22264 * 3 2 1 5 5 H 1.48499 * 109.47103 * 35.21476 * 3 2 1 6 6 H 1.48493 * 109.47323 * 155.21919 * 3 2 1 7 7 C 1.38813 * 119.99887 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00341 * 341.14531 * 7 2 1 9 9 N 1.36936 * 119.99898 * 161.13959 * 7 2 1 10 10 C 1.46505 * 120.00258 * 322.50582 * 9 7 2 11 11 C 1.52990 * 109.47038 * 267.08382 * 10 9 7 12 12 O 1.42898 * 109.47460 * 63.73614 * 11 10 9 13 13 C 1.46497 * 119.99941 * 142.50136 * 9 7 2 14 14 C 1.53784 * 113.61359 * 39.14081 * 13 9 7 15 15 C 1.53954 * 87.01860 * 220.04702 * 14 13 9 16 16 C 1.53779 * 87.11393 * 25.36385 * 15 14 13 17 17 H 0.97000 * 120.00060 * 359.97438 * 1 2 3 18 18 H 1.09000 * 109.46591 * 27.08828 * 10 9 7 19 19 H 1.08999 * 109.47089 * 147.07898 * 10 9 7 20 20 H 1.09005 * 109.47124 * 183.73537 * 11 10 9 21 21 H 1.08999 * 109.47466 * 303.73980 * 11 10 9 22 22 H 0.96692 * 114.00800 * 179.97438 * 12 11 10 23 23 H 1.08998 * 112.85402 * 170.33972 * 13 9 7 24 24 H 1.08997 * 113.61267 * 334.56692 * 14 13 9 25 25 H 1.09001 * 113.61474 * 105.47193 * 14 13 9 26 26 H 1.09000 * 113.54133 * 270.81182 * 15 14 13 27 27 H 1.09004 * 113.66873 * 139.93362 * 15 14 13 28 28 H 1.09001 * 113.61587 * 220.09120 * 16 15 14 29 29 H 1.09001 * 113.69298 * 89.19580 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3874 2.1101 -1.3942 5 1 1.5072 2.6183 0.8073 6 1 3.5985 1.4108 0.5868 7 6 2.0103 -1.2022 -0.0005 8 1 1.5138 -2.1125 0.3013 9 7 3.3245 -1.2338 -0.3839 10 6 3.7880 -0.3821 -1.4821 11 6 3.7176 -1.1616 -2.7967 12 8 2.3564 -1.4868 -3.0854 13 6 4.2671 -2.1194 0.3042 14 6 3.6733 -3.4920 0.6626 15 6 4.4289 -3.3800 1.9993 16 6 4.3703 -1.8544 1.8155 17 1 -0.4850 0.8400 0.0004 18 1 3.1534 0.5016 -1.5492 19 1 4.8175 -0.0766 -1.2954 20 1 4.1243 -0.5513 -3.6032 21 1 4.2991 -2.0791 -2.7066 22 1 2.2361 -1.9822 -3.9070 23 1 5.2339 -2.1790 -0.1956 24 1 2.5889 -3.4834 0.7720 25 1 4.0292 -4.3015 0.0253 26 1 5.4400 -3.7856 1.9632 27 1 3.8582 -3.7388 2.8559 28 1 5.2880 -1.3438 2.1076 29 1 3.4773 -1.3960 2.2404 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000221145433.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:16 Heat of formation + Delta-G solvation = 0.267217 kcal Electronic energy + Delta-G solvation = -12051.817152 eV Core-core repulsion = 9976.872390 eV Total energy + Delta-G solvation = -2074.944762 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.24541 -36.14280 -33.78764 -31.25796 -28.06636 -24.93937 -24.72871 -22.72015 -20.80090 -18.66934 -16.72578 -16.15044 -15.33285 -15.23171 -14.19934 -13.63956 -13.13625 -12.51126 -12.45527 -12.07657 -11.50286 -11.44019 -11.00202 -10.86716 -10.47913 -10.06966 -9.78604 -9.69471 -9.48177 -9.30671 -9.04369 -8.35385 -6.65930 -5.79776 -3.21986 3.39696 3.53840 3.58137 4.65872 4.98209 5.15182 5.44962 5.53070 5.57265 5.71954 5.86107 5.96566 6.02371 6.21346 6.29055 6.32903 6.40375 6.58844 6.63242 6.76017 6.91945 7.07822 7.31868 8.22367 8.48205 8.57637 9.14538 9.89493 10.26874 11.36375 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.031811 B = 0.020093 C = 0.016100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.994533 B = 1393.190975 C = 1738.712786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.036 3.964 3 Si 0.879 3.121 4 H -0.289 1.289 5 H -0.305 1.305 6 H -0.271 1.271 7 C -0.242 4.242 8 H 0.080 0.920 9 N -0.586 5.586 10 C 0.129 3.871 11 C 0.062 3.938 12 O -0.536 6.536 13 C 0.155 3.845 14 C -0.148 4.148 15 C -0.144 4.144 16 C -0.156 4.156 17 H 0.259 0.741 18 H 0.062 0.938 19 H 0.051 0.949 20 H 0.022 0.978 21 H 0.031 0.969 22 H 0.353 0.647 23 H 0.070 0.930 24 H 0.093 0.907 25 H 0.046 0.954 26 H 0.064 0.936 27 H 0.058 0.942 28 H 0.045 0.955 29 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.473 -3.353 -2.036 10.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.163 4.163 3 Si 0.711 3.289 4 H -0.218 1.218 5 H -0.234 1.234 6 H -0.196 1.196 7 C -0.371 4.371 8 H 0.097 0.903 9 N -0.306 5.306 10 C 0.003 3.997 11 C -0.019 4.019 12 O -0.337 6.337 13 C 0.047 3.953 14 C -0.187 4.187 15 C -0.182 4.182 16 C -0.196 4.196 17 H 0.069 0.931 18 H 0.080 0.920 19 H 0.069 0.931 20 H 0.040 0.960 21 H 0.049 0.951 22 H 0.196 0.804 23 H 0.088 0.912 24 H 0.111 0.889 25 H 0.065 0.935 26 H 0.083 0.917 27 H 0.076 0.924 28 H 0.064 0.936 29 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 9.214 -2.911 -1.456 9.772 hybrid contribution 0.586 0.699 -0.642 1.116 sum 9.800 -2.211 -2.098 10.263 Atomic orbital electron populations 1.69835 1.05841 1.26161 1.53016 1.25359 0.95000 0.97438 0.98488 0.86899 0.80468 0.85103 0.76466 1.21778 1.23371 1.19562 1.18557 0.84073 0.93724 1.40698 0.90286 1.44049 1.06741 1.46759 1.33041 1.21362 0.97312 0.94359 0.86710 1.22894 0.83647 0.97596 0.97765 1.86929 1.25297 1.77378 1.44101 1.21824 0.91947 0.90791 0.90710 1.23416 1.01858 0.97939 0.95533 1.22696 0.99352 0.97878 0.98310 1.23508 1.01242 0.94671 1.00176 0.93090 0.92049 0.93123 0.95964 0.95054 0.80374 0.91202 0.88891 0.93485 0.91689 0.92359 0.93620 0.89185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.70 13.97 55.49 0.78 -27.92 15 2 C 0.04 1.08 5.35 -17.43 -0.09 0.99 15 3 Si 0.88 23.12 24.80 -169.99 -4.21 18.91 15 4 H -0.29 -7.51 6.71 56.52 0.38 -7.13 15 5 H -0.31 -8.14 7.11 56.52 0.40 -7.74 15 6 H -0.27 -6.88 7.10 56.52 0.40 -6.47 15 7 C -0.24 -6.86 8.35 -15.06 -0.13 -6.98 15 8 H 0.08 2.43 6.31 -52.49 -0.33 2.10 15 9 N -0.59 -14.16 2.30 -164.74 -0.38 -14.54 15 10 C 0.13 2.87 4.77 -4.04 -0.02 2.85 15 11 C 0.06 1.20 7.40 37.15 0.27 1.47 15 12 O -0.54 -11.69 13.22 -35.23 -0.47 -12.16 15 13 C 0.16 3.16 4.39 -67.12 -0.29 2.86 15 14 C -0.15 -2.83 7.56 -25.83 -0.20 -3.03 15 15 C -0.14 -2.41 8.09 -25.83 -0.21 -2.62 15 16 C -0.16 -3.02 7.68 -25.92 -0.20 -3.22 15 17 H 0.26 7.83 8.31 -40.82 -0.34 7.49 15 18 H 0.06 1.54 3.12 -51.93 -0.16 1.38 15 19 H 0.05 0.99 8.09 -51.93 -0.42 0.57 15 20 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 15 21 H 0.03 0.56 8.14 -51.93 -0.42 0.14 15 22 H 0.35 5.61 9.12 45.56 0.42 6.02 15 23 H 0.07 1.26 8.08 -51.93 -0.42 0.85 15 24 H 0.09 2.04 6.10 -51.93 -0.32 1.73 15 25 H 0.05 0.81 8.14 -51.93 -0.42 0.39 15 26 H 0.06 0.94 8.14 -51.93 -0.42 0.51 15 27 H 0.06 0.93 8.14 -51.93 -0.42 0.51 15 28 H 0.05 0.80 8.14 -51.93 -0.42 0.38 15 29 H 0.09 1.99 7.60 -51.93 -0.39 1.60 15 LS Contribution 234.37 15.07 3.53 3.53 Total: -1.00 -32.65 234.37 -4.94 -37.59 By element: Atomic # 1 Polarization: 5.59 SS G_CDS: -3.32 Total: 2.26 kcal Atomic # 6 Polarization: -6.81 SS G_CDS: -0.86 Total: -7.67 kcal Atomic # 7 Polarization: -42.86 SS G_CDS: 0.40 Total: -42.46 kcal Atomic # 8 Polarization: -11.69 SS G_CDS: -0.47 Total: -12.16 kcal Atomic # 14 Polarization: 23.12 SS G_CDS: -4.21 Total: 18.91 kcal Total LS contribution 3.53 Total: 3.53 kcal Total: -32.65 -4.94 -37.59 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221145433.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.853 kcal (2) G-P(sol) polarization free energy of solvation -32.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.585 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds