Wall clock time and date at job start Sun Mar 29 2020 21:35:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86796 * 120.00087 * 2 1 4 4 H 1.48500 * 109.47272 * 275.22264 * 3 2 1 5 5 H 1.48499 * 109.47103 * 35.21476 * 3 2 1 6 6 H 1.48493 * 109.47323 * 155.21919 * 3 2 1 7 7 C 1.38813 * 119.99887 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00341 * 341.14531 * 7 2 1 9 9 N 1.36936 * 119.99898 * 161.13959 * 7 2 1 10 10 C 1.46505 * 120.00258 * 322.50582 * 9 7 2 11 11 C 1.52990 * 109.47038 * 267.08382 * 10 9 7 12 12 O 1.42898 * 109.47460 * 63.73614 * 11 10 9 13 13 C 1.46497 * 119.99941 * 142.50136 * 9 7 2 14 14 C 1.53784 * 113.61359 * 39.14081 * 13 9 7 15 15 C 1.53954 * 87.01860 * 220.04702 * 14 13 9 16 16 C 1.53779 * 87.11393 * 25.36385 * 15 14 13 17 17 H 0.97000 * 120.00060 * 359.97438 * 1 2 3 18 18 H 1.09000 * 109.46591 * 27.08828 * 10 9 7 19 19 H 1.08999 * 109.47089 * 147.07898 * 10 9 7 20 20 H 1.09005 * 109.47124 * 183.73537 * 11 10 9 21 21 H 1.08999 * 109.47466 * 303.73980 * 11 10 9 22 22 H 0.96692 * 114.00800 * 179.97438 * 12 11 10 23 23 H 1.08998 * 112.85402 * 170.33972 * 13 9 7 24 24 H 1.08997 * 113.61267 * 334.56692 * 14 13 9 25 25 H 1.09001 * 113.61474 * 105.47193 * 14 13 9 26 26 H 1.09000 * 113.54133 * 270.81182 * 15 14 13 27 27 H 1.09004 * 113.66873 * 139.93362 * 15 14 13 28 28 H 1.09001 * 113.61587 * 220.09120 * 16 15 14 29 29 H 1.09001 * 113.69298 * 89.19580 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3874 2.1101 -1.3942 5 1 1.5072 2.6183 0.8073 6 1 3.5985 1.4108 0.5868 7 6 2.0103 -1.2022 -0.0005 8 1 1.5138 -2.1125 0.3013 9 7 3.3245 -1.2338 -0.3839 10 6 3.7880 -0.3821 -1.4821 11 6 3.7176 -1.1616 -2.7967 12 8 2.3564 -1.4868 -3.0854 13 6 4.2671 -2.1194 0.3042 14 6 3.6733 -3.4920 0.6626 15 6 4.4289 -3.3800 1.9993 16 6 4.3703 -1.8544 1.8155 17 1 -0.4850 0.8400 0.0004 18 1 3.1534 0.5016 -1.5492 19 1 4.8175 -0.0766 -1.2954 20 1 4.1243 -0.5513 -3.6032 21 1 4.2991 -2.0791 -2.7066 22 1 2.2361 -1.9822 -3.9070 23 1 5.2339 -2.1790 -0.1956 24 1 2.5889 -3.4834 0.7720 25 1 4.0292 -4.3015 0.0253 26 1 5.4400 -3.7856 1.9632 27 1 3.8582 -3.7388 2.8559 28 1 5.2880 -1.3438 2.1076 29 1 3.4773 -1.3960 2.2404 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000221145433.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:16 Heat of formation + Delta-G solvation = -24.949927 kcal Electronic energy + Delta-G solvation = -12052.910649 eV Core-core repulsion = 9976.872390 eV Total energy + Delta-G solvation = -2076.038260 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.86529 -37.73281 -35.63225 -33.36878 -29.81191 -26.80312 -26.27737 -24.38970 -22.54706 -20.35491 -18.38117 -18.07805 -17.26848 -16.88226 -15.74140 -15.42107 -14.87543 -14.52936 -14.01889 -13.90473 -13.21545 -13.12753 -12.70608 -12.59194 -12.41958 -11.77941 -11.61049 -11.45661 -11.07748 -10.93266 -10.69982 -10.47632 -8.61695 -8.05724 -5.43369 1.30267 1.40295 1.50935 2.49452 3.15622 3.37956 3.72956 4.02627 4.08357 4.24055 4.32269 4.45476 4.55186 4.69013 4.79380 4.85948 4.95034 5.06443 5.13247 5.19232 5.29935 5.54355 5.77345 6.09709 6.30576 7.10166 7.20655 7.78248 8.16018 9.14919 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.031811 B = 0.020093 C = 0.016100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.994533 B = 1393.190975 C = 1738.712786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.962 5.962 2 C -0.030 4.030 3 Si 0.945 3.055 4 H -0.284 1.284 5 H -0.317 1.317 6 H -0.253 1.253 7 C -0.213 4.213 8 H 0.039 0.961 9 N -0.599 5.599 10 C 0.114 3.886 11 C 0.063 3.937 12 O -0.578 6.578 13 C 0.144 3.856 14 C -0.152 4.152 15 C -0.122 4.122 16 C -0.160 4.160 17 H 0.255 0.745 18 H 0.032 0.968 19 H 0.087 0.913 20 H 0.057 0.943 21 H 0.051 0.949 22 H 0.377 0.623 23 H 0.107 0.893 24 H 0.050 0.950 25 H 0.068 0.932 26 H 0.103 0.897 27 H 0.060 0.940 28 H 0.069 0.931 29 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.743 -3.669 -2.541 13.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.608 5.608 2 C -0.224 4.224 3 Si 0.776 3.224 4 H -0.212 1.212 5 H -0.246 1.246 6 H -0.177 1.177 7 C -0.343 4.343 8 H 0.057 0.943 9 N -0.320 5.320 10 C -0.011 4.011 11 C -0.016 4.016 12 O -0.384 6.384 13 C 0.037 3.963 14 C -0.191 4.191 15 C -0.160 4.160 16 C -0.200 4.200 17 H 0.064 0.936 18 H 0.050 0.950 19 H 0.105 0.895 20 H 0.075 0.925 21 H 0.070 0.930 22 H 0.223 0.777 23 H 0.125 0.875 24 H 0.069 0.931 25 H 0.086 0.914 26 H 0.121 0.879 27 H 0.079 0.921 28 H 0.087 0.913 29 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 12.545 -3.253 -1.980 13.110 hybrid contribution -0.388 0.658 -0.520 0.925 sum 12.157 -2.594 -2.501 12.680 Atomic orbital electron populations 1.69987 1.07659 1.26563 1.56583 1.25990 0.95598 1.00964 0.99818 0.85816 0.79522 0.80619 0.76417 1.21216 1.24644 1.17709 1.18363 0.85947 0.91990 1.37985 0.94342 1.44176 1.05735 1.47637 1.34442 1.21579 0.98438 0.93426 0.87673 1.22864 0.82904 0.98664 0.97205 1.86852 1.27224 1.78185 1.46102 1.22231 0.92676 0.90157 0.91190 1.23299 0.99625 0.98317 0.97901 1.22656 1.00946 0.95635 0.96752 1.23416 1.00510 0.96784 0.99318 0.93594 0.94976 0.89542 0.92502 0.93040 0.77669 0.87499 0.93128 0.91381 0.87853 0.92122 0.91259 0.93185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -63.54 13.97 21.65 0.30 -63.24 15 2 C -0.03 -1.81 5.35 84.86 0.45 -1.36 15 3 Si 0.95 48.69 24.80 68.60 1.70 50.39 15 4 H -0.28 -14.20 6.71 99.48 0.67 -13.53 15 5 H -0.32 -16.68 7.11 99.48 0.71 -15.97 15 6 H -0.25 -12.08 7.10 99.48 0.71 -11.38 15 7 C -0.21 -12.32 8.35 84.03 0.70 -11.62 15 8 H 0.04 2.51 6.31 -2.91 -0.02 2.50 15 9 N -0.60 -28.06 2.30 -675.12 -1.55 -29.62 15 10 C 0.11 4.75 4.77 86.37 0.41 5.16 15 11 C 0.06 2.24 7.40 71.98 0.53 2.77 15 12 O -0.58 -24.47 13.22 -148.98 -1.97 -26.44 15 13 C 0.14 5.43 4.39 45.52 0.20 5.63 15 14 C -0.15 -5.56 7.56 31.18 0.24 -5.32 15 15 C -0.12 -3.67 8.09 31.18 0.25 -3.42 15 16 C -0.16 -5.81 7.68 31.12 0.24 -5.57 15 17 H 0.26 16.13 8.31 -92.71 -0.77 15.36 15 18 H 0.03 1.54 3.12 -2.39 -0.01 1.54 15 19 H 0.09 2.96 8.09 -2.39 -0.02 2.94 15 20 H 0.06 1.63 8.14 -2.38 -0.02 1.61 15 21 H 0.05 1.61 8.14 -2.39 -0.02 1.59 15 22 H 0.38 11.38 9.12 -74.06 -0.68 10.70 15 23 H 0.11 3.28 8.08 -2.39 -0.02 3.26 15 24 H 0.05 2.28 6.10 -2.39 -0.01 2.26 15 25 H 0.07 2.16 8.14 -2.39 -0.02 2.14 15 26 H 0.10 2.40 8.14 -2.39 -0.02 2.38 15 27 H 0.06 1.80 8.14 -2.38 -0.02 1.78 15 28 H 0.07 2.17 8.14 -2.39 -0.02 2.15 15 29 H 0.05 2.21 7.60 -2.39 -0.02 2.19 15 Total: -1.00 -73.03 234.37 1.93 -71.10 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: 0.42 Total: 11.53 kcal Atomic # 6 Polarization: -16.76 SS G_CDS: 3.03 Total: -13.73 kcal Atomic # 7 Polarization: -91.60 SS G_CDS: -1.25 Total: -92.85 kcal Atomic # 8 Polarization: -24.47 SS G_CDS: -1.97 Total: -26.44 kcal Atomic # 14 Polarization: 48.69 SS G_CDS: 1.70 Total: 50.39 kcal Total: -73.03 1.93 -71.10 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221145433.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.148 kcal (2) G-P(sol) polarization free energy of solvation -73.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds