Wall clock time and date at job start Sun Mar 29 2020 21:40:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 110.64350 * 2 1 4 4 C 1.55159 * 110.71712 * 123.13713 * 2 1 3 5 5 C 1.54915 * 101.57965 * 153.86458 * 4 2 1 6 6 N 1.47420 * 104.83407 * 322.99192 * 5 4 2 7 7 C 1.36929 * 125.64962 * 204.09140 * 6 5 4 8 8 H 1.08004 * 120.00341 * 180.30291 * 7 6 5 9 9 C 1.38815 * 120.00031 * 0.02562 * 7 6 5 10 10 N 1.31617 * 119.99916 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 119.99958 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.46986 * 90.00489 * 11 9 7 13 13 H 1.48496 * 109.47029 * 210.00506 * 11 9 7 14 14 H 1.48499 * 109.47352 * 330.00336 * 11 9 7 15 15 C 1.47031 * 108.70213 * 24.35756 * 6 5 4 16 16 H 1.09001 * 109.87722 * 239.29329 * 15 6 5 17 17 C 1.52996 * 109.88290 * 118.13217 * 15 6 5 18 18 O 1.42900 * 109.47406 * 66.44951 * 17 15 6 19 19 H 1.09001 * 109.47408 * 298.31566 * 1 2 3 20 20 H 1.08996 * 109.46681 * 58.31387 * 1 2 3 21 21 H 1.08997 * 109.47004 * 178.30959 * 1 2 3 22 22 H 1.09007 * 111.00445 * 35.79549 * 4 2 1 23 23 H 1.08995 * 111.00768 * 271.94224 * 4 2 1 24 24 H 1.08995 * 110.36546 * 204.14844 * 5 4 2 25 25 H 1.09000 * 110.45324 * 81.87905 * 5 4 2 26 26 H 0.97000 * 120.00284 * 179.97438 * 10 9 7 27 27 H 1.08997 * 109.46898 * 186.45604 * 17 15 6 28 28 H 1.09001 * 109.46566 * 306.44779 * 17 15 6 29 29 H 0.96700 * 113.99790 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0789 -0.7933 1.2152 5 6 3.4633 -1.2486 0.6898 6 7 3.2446 -1.5521 -0.7362 7 6 4.0043 -2.3996 -1.4974 8 1 3.7640 -2.5518 -2.5393 9 6 5.0870 -3.0587 -0.9315 10 7 5.3830 -2.8695 0.3369 11 14 6.1239 -4.2143 -1.9702 12 1 7.2333 -3.4536 -2.5993 13 1 6.6846 -5.2858 -1.1085 14 1 5.2780 -4.8222 -3.0286 15 6 2.0794 -0.7890 -1.2073 16 1 1.3157 -1.4714 -1.5803 17 6 2.5035 0.1776 -2.3148 18 8 2.9156 -0.5656 -3.4636 19 1 -0.3634 0.4874 0.9047 20 1 -0.3632 0.5398 -0.8745 21 1 -0.3633 -1.0272 -0.0303 22 1 1.4451 -1.6511 1.4404 23 1 2.1849 -0.1482 2.0874 24 1 3.7960 -2.1405 1.2207 25 1 4.1945 -0.4478 0.7994 26 1 6.1393 -3.3303 0.7325 27 1 1.6626 0.8187 -2.5791 28 1 3.3323 0.7920 -1.9629 29 1 3.1983 -0.0157 -4.2071 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000227005913.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:40 Heat of formation + Delta-G solvation = -31.633426 kcal Electronic energy + Delta-G solvation = -11991.045338 eV Core-core repulsion = 9914.717260 eV Total energy + Delta-G solvation = -2076.328078 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.10797 -35.45331 -33.00319 -30.22899 -29.20351 -26.82552 -23.63019 -22.77989 -20.01400 -19.07827 -16.69221 -16.35400 -15.32487 -14.33894 -13.93280 -13.27332 -12.98399 -12.79143 -12.47985 -11.70440 -11.42982 -11.11099 -10.94558 -10.75620 -10.65068 -10.06857 -9.91264 -9.87186 -9.68415 -9.35974 -9.03408 -8.49104 -6.70491 -5.48267 -2.88307 3.50751 3.55186 3.58600 4.63286 4.90626 5.36782 5.42582 5.58901 5.69193 5.79218 5.99352 6.06067 6.09902 6.20090 6.35201 6.37583 6.39421 6.60704 6.74914 6.82255 7.15467 7.61416 7.91377 8.02917 8.34740 8.52287 9.42285 10.00911 10.64304 11.56536 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.045447 B = 0.015350 C = 0.012218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.952986 B = 1823.706178 C = 2291.240913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.100 4.100 3 H 0.068 0.932 4 C -0.140 4.140 5 C 0.148 3.852 6 N -0.591 5.591 7 C -0.196 4.196 8 H 0.089 0.911 9 C -0.024 4.024 10 N -0.932 5.932 11 Si 0.914 3.086 12 H -0.292 1.292 13 H -0.293 1.293 14 H -0.282 1.282 15 C 0.164 3.836 16 H 0.040 0.960 17 C 0.070 3.930 18 O -0.554 6.554 19 H 0.050 0.950 20 H 0.048 0.952 21 H 0.055 0.945 22 H 0.060 0.940 23 H 0.056 0.944 24 H 0.107 0.893 25 H 0.009 0.991 26 H 0.248 0.752 27 H 0.023 0.977 28 H 0.037 0.963 29 H 0.358 0.642 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.962 6.311 -1.419 9.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.119 4.119 3 H 0.086 0.914 4 C -0.179 4.179 5 C 0.023 3.977 6 N -0.315 5.315 7 C -0.324 4.324 8 H 0.106 0.894 9 C -0.218 4.218 10 N -0.582 5.582 11 Si 0.746 3.254 12 H -0.220 1.220 13 H -0.220 1.220 14 H -0.208 1.208 15 C 0.056 3.944 16 H 0.058 0.942 17 C -0.010 4.010 18 O -0.356 6.356 19 H 0.069 0.931 20 H 0.067 0.933 21 H 0.074 0.926 22 H 0.079 0.921 23 H 0.075 0.925 24 H 0.125 0.875 25 H 0.027 0.973 26 H 0.059 0.941 27 H 0.041 0.959 28 H 0.055 0.945 29 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -6.926 5.631 -1.000 8.982 hybrid contribution 0.804 0.133 -0.921 1.230 sum -6.122 5.764 -1.921 8.625 Atomic orbital electron populations 1.21746 0.95416 1.01621 1.00655 1.22084 0.94647 0.98848 0.96348 0.91355 1.23077 1.00459 0.98572 0.95784 1.21980 0.89907 1.00567 0.85233 1.44604 1.30569 1.49139 1.07185 1.19338 1.05175 1.14699 0.93229 0.89357 1.24799 0.99151 1.01336 0.96473 1.69803 1.30349 1.47145 1.10944 0.86051 0.80225 0.80268 0.78898 1.22008 1.22007 1.20802 1.21037 0.91056 0.91628 0.90716 0.94233 1.22915 0.96172 0.94487 0.87455 1.86695 1.87734 1.36546 1.24675 0.93050 0.93328 0.92621 0.92129 0.92530 0.87519 0.97326 0.94132 0.95863 0.94484 0.79816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 9.15 37.16 0.34 -1.65 15 2 C -0.10 -1.81 3.07 -88.78 -0.27 -2.08 15 3 H 0.07 1.17 7.85 -51.93 -0.41 0.76 15 4 C -0.14 -2.77 6.54 -24.58 -0.16 -2.93 15 5 C 0.15 3.74 5.89 -2.53 -0.01 3.73 15 6 N -0.59 -15.78 3.13 -162.57 -0.51 -16.29 15 7 C -0.20 -5.73 9.47 -15.06 -0.14 -5.87 15 8 H 0.09 2.60 6.66 -52.48 -0.35 2.25 15 9 C -0.02 -0.71 5.49 -17.43 -0.10 -0.81 15 10 N -0.93 -28.29 10.09 55.49 0.56 -27.73 15 11 Si 0.91 23.34 29.55 -169.99 -5.02 18.32 15 12 H -0.29 -7.45 7.11 56.52 0.40 -7.05 15 13 H -0.29 -7.49 7.11 56.52 0.40 -7.09 15 14 H -0.28 -7.07 7.11 56.52 0.40 -6.67 15 15 C 0.16 3.58 3.07 -66.95 -0.21 3.38 15 16 H 0.04 0.91 7.79 -51.93 -0.40 0.51 15 17 C 0.07 1.37 6.48 37.16 0.24 1.61 15 18 O -0.55 -11.33 11.77 -35.23 -0.41 -11.75 15 19 H 0.05 0.65 8.14 -51.93 -0.42 0.23 15 20 H 0.05 0.64 8.14 -51.93 -0.42 0.22 15 21 H 0.05 0.83 8.10 -51.93 -0.42 0.41 15 22 H 0.06 1.18 8.05 -51.92 -0.42 0.76 15 23 H 0.06 0.98 8.14 -51.93 -0.42 0.56 15 24 H 0.11 3.03 5.87 -51.93 -0.31 2.72 15 25 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 15 26 H 0.25 7.32 8.31 -40.82 -0.34 6.98 15 27 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 15 28 H 0.04 0.75 8.14 -51.93 -0.42 0.33 15 29 H 0.36 5.31 9.12 45.56 0.42 5.73 15 LS Contribution 235.61 15.07 3.55 3.55 Total: -1.00 -32.40 235.61 -5.71 -38.11 By element: Atomic # 1 Polarization: 3.98 SS G_CDS: -3.56 Total: 0.42 kcal Atomic # 6 Polarization: -4.32 SS G_CDS: -0.31 Total: -4.63 kcal Atomic # 7 Polarization: -44.07 SS G_CDS: 0.05 Total: -44.02 kcal Atomic # 8 Polarization: -11.33 SS G_CDS: -0.41 Total: -11.75 kcal Atomic # 14 Polarization: 23.34 SS G_CDS: -5.02 Total: 18.32 kcal Total LS contribution 3.55 Total: 3.55 kcal Total: -32.40 -5.71 -38.11 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227005913.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.476 kcal (2) G-P(sol) polarization free energy of solvation -32.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds