Wall clock time and date at job start Sun Mar 29 2020 21:41:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.49695 * 2 1 4 4 C 1.53188 * 109.50362 * 239.93087 * 2 1 3 5 5 N 1.46917 * 108.77981 * 185.38008 * 4 2 1 6 6 C 1.36935 * 120.63313 * 233.58749 * 5 4 2 7 7 H 1.08003 * 120.00334 * 151.84309 * 6 5 4 8 8 C 1.38816 * 120.00109 * 331.84348 * 6 5 4 9 9 N 1.31624 * 119.99356 * 343.07479 * 8 6 5 10 10 Si 1.86793 * 120.00395 * 163.07501 * 8 6 5 11 11 H 1.48500 * 109.47341 * 59.99642 * 10 8 6 12 12 H 1.48496 * 109.47062 * 180.02562 * 10 8 6 13 13 H 1.48504 * 109.46651 * 299.99824 * 10 8 6 14 14 C 1.46934 * 118.73910 * 53.60732 * 5 4 2 15 15 C 1.53194 * 108.89214 * 306.32295 * 14 5 4 16 16 C 1.53038 * 109.52433 * 120.07312 * 2 1 3 17 17 H 1.09005 * 109.45863 * 61.32874 * 16 2 1 18 18 O 1.42898 * 109.46224 * 301.35875 * 16 2 1 19 19 H 1.09004 * 109.46832 * 180.02562 * 1 2 3 20 20 H 1.08992 * 109.47598 * 300.06668 * 1 2 3 21 21 H 1.09000 * 109.46952 * 60.07153 * 1 2 3 22 22 H 1.09003 * 109.58672 * 65.58833 * 4 2 1 23 23 H 1.09004 * 109.69865 * 305.23981 * 4 2 1 24 24 H 0.96997 * 119.99488 * 180.02562 * 9 8 6 25 25 H 1.08993 * 109.58470 * 66.18088 * 14 5 4 26 26 H 1.09001 * 109.58650 * 186.46265 * 14 5 4 27 27 H 1.08992 * 109.49638 * 174.66086 * 15 14 5 28 28 H 1.09002 * 109.49602 * 294.75299 * 15 14 5 29 29 H 0.96701 * 114.00403 * 180.02562 * 18 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0276 0.0000 4 6 2.0414 -0.7235 -1.2497 5 7 3.5047 -0.8281 -1.1700 6 6 4.2932 -0.3779 -2.1950 7 1 5.2957 -0.0307 -1.9928 8 6 3.8041 -0.3677 -3.4941 9 7 2.7410 -1.0799 -3.8025 10 14 4.6545 0.6566 -4.8044 11 1 6.0600 0.2013 -4.9539 12 1 3.9417 0.4970 -6.0973 13 1 4.6373 2.0863 -4.4034 14 6 4.1060 -1.4254 0.0302 15 6 3.5746 -0.6947 1.2673 16 6 2.0415 -0.7228 1.2482 17 1 1.6981 -1.7572 1.2351 18 8 1.5398 -0.0694 2.4159 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3634 0.5148 0.8893 21 1 -0.3633 0.5127 -0.8906 22 1 1.7634 -0.1578 -2.1389 23 1 1.6059 -1.7215 -1.3005 24 1 2.3994 -1.0731 -4.7103 25 1 3.8389 -2.4806 0.0862 26 1 5.1904 -1.3250 -0.0158 27 1 3.9398 -1.1897 2.1671 28 1 3.9192 0.3393 1.2551 29 1 1.8247 -0.4746 3.2464 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000253283626.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:06 Heat of formation + Delta-G solvation = -43.467634 kcal Electronic energy + Delta-G solvation = -11971.962007 eV Core-core repulsion = 9895.120760 eV Total energy + Delta-G solvation = -2076.841248 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.30554 -35.37074 -32.62391 -31.78426 -29.35304 -25.79531 -24.82324 -22.09663 -20.77615 -19.05071 -16.75670 -16.74479 -14.81333 -14.30023 -13.89119 -13.65124 -13.01435 -12.87319 -12.50045 -12.01952 -11.40760 -11.23976 -11.06597 -10.79684 -10.65416 -10.48606 -10.04789 -9.93599 -9.74290 -9.41702 -9.20101 -8.45676 -6.68248 -5.78787 -3.21455 3.39383 3.44986 3.46662 4.50103 4.75772 5.30039 5.39481 5.51539 5.61878 5.79013 5.92395 6.17231 6.19932 6.32758 6.45603 6.56328 6.63432 6.72850 6.86479 6.90447 6.99138 7.39584 7.65914 7.79538 8.07552 8.45641 9.21269 9.84390 10.41393 11.30089 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.057032 B = 0.012975 C = 0.011584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 490.831427 B = 2157.407070 C = 2416.613511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.107 4.107 3 H 0.067 0.933 4 C 0.179 3.821 5 N -0.594 5.594 6 C -0.255 4.255 7 H 0.065 0.935 8 C 0.002 3.998 9 N -0.903 5.903 10 Si 0.904 3.096 11 H -0.282 1.282 12 H -0.290 1.290 13 H -0.283 1.283 14 C 0.146 3.854 15 C -0.165 4.165 16 C 0.114 3.886 17 H 0.045 0.955 18 O -0.574 6.574 19 H 0.046 0.954 20 H 0.051 0.949 21 H 0.050 0.950 22 H 0.092 0.908 23 H 0.019 0.981 24 H 0.255 0.745 25 H 0.018 0.982 26 H 0.055 0.945 27 H 0.051 0.949 28 H 0.065 0.935 29 H 0.365 0.635 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.518 0.364 8.103 8.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.127 4.127 3 H 0.085 0.915 4 C 0.053 3.947 5 N -0.316 5.316 6 C -0.385 4.385 7 H 0.083 0.917 8 C -0.196 4.196 9 N -0.547 5.547 10 Si 0.734 3.266 11 H -0.209 1.209 12 H -0.216 1.216 13 H -0.210 1.210 14 C 0.020 3.980 15 C -0.204 4.204 16 C 0.056 3.944 17 H 0.063 0.937 18 O -0.378 6.378 19 H 0.065 0.935 20 H 0.070 0.930 21 H 0.069 0.931 22 H 0.110 0.890 23 H 0.037 0.963 24 H 0.065 0.935 25 H 0.035 0.965 26 H 0.074 0.926 27 H 0.069 0.931 28 H 0.083 0.917 29 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -1.857 0.720 7.449 7.710 hybrid contribution 0.713 0.076 -0.278 0.769 sum -1.144 0.796 7.170 7.305 Atomic orbital electron populations 1.21642 0.95872 1.00961 1.00815 1.21894 0.94968 1.00720 0.95160 0.91485 1.20855 0.82880 0.97043 0.93968 1.44085 1.01849 1.69453 1.16231 1.19153 0.98054 1.35483 0.85763 0.91711 1.25062 0.98544 0.98970 0.97042 1.70020 1.25658 1.40131 1.18911 0.86347 0.78909 0.80506 0.80884 1.20855 1.21575 1.20994 1.20855 0.96738 0.94023 0.86408 1.22799 0.96387 1.02004 0.99244 1.21918 0.92436 0.94839 0.85177 0.93697 1.86530 1.75991 1.59391 1.15936 0.93503 0.93031 0.93093 0.89000 0.96260 0.93525 0.96458 0.92609 0.93060 0.91672 0.78963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.44 9.04 37.16 0.34 -2.10 15 2 C -0.11 -2.21 2.62 -90.50 -0.24 -2.45 15 3 H 0.07 1.48 8.14 -51.93 -0.42 1.06 15 4 C 0.18 4.38 4.59 -3.72 -0.02 4.36 15 5 N -0.59 -15.30 2.99 -172.32 -0.52 -15.82 15 6 C -0.25 -7.13 9.58 -15.06 -0.14 -7.28 15 7 H 0.07 1.77 7.89 -52.48 -0.41 1.36 15 8 C 0.00 0.07 4.92 -17.43 -0.09 -0.02 15 9 N -0.90 -26.43 11.20 55.49 0.62 -25.81 15 10 Si 0.90 21.89 29.59 -169.99 -5.03 16.86 15 11 H -0.28 -6.73 7.11 56.52 0.40 -6.33 15 12 H -0.29 -7.03 7.11 56.52 0.40 -6.63 15 13 H -0.28 -6.82 7.11 56.52 0.40 -6.41 15 14 C 0.15 3.15 6.50 -3.71 -0.02 3.12 15 15 C -0.16 -2.99 5.73 -26.45 -0.15 -3.14 15 16 C 0.11 2.10 2.88 -26.53 -0.08 2.02 15 17 H 0.05 0.82 8.14 -51.93 -0.42 0.39 15 18 O -0.57 -9.42 12.60 -35.23 -0.44 -9.87 15 19 H 0.05 0.81 8.14 -51.93 -0.42 0.38 15 20 H 0.05 0.88 7.65 -51.93 -0.40 0.48 15 21 H 0.05 0.89 8.14 -51.93 -0.42 0.47 15 22 H 0.09 2.51 6.06 -51.93 -0.31 2.19 15 23 H 0.02 0.49 8.14 -51.93 -0.42 0.07 15 24 H 0.25 7.20 8.31 -40.82 -0.34 6.86 15 25 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 15 26 H 0.06 1.16 7.93 -51.93 -0.41 0.75 15 27 H 0.05 0.77 8.14 -51.93 -0.42 0.35 15 28 H 0.06 1.26 8.14 -51.93 -0.42 0.83 15 29 H 0.36 4.24 9.08 45.56 0.41 4.66 15 LS Contribution 235.62 15.07 3.55 3.55 Total: -1.00 -30.28 235.62 -5.86 -36.14 By element: Atomic # 1 Polarization: 4.08 SS G_CDS: -3.64 Total: 0.43 kcal Atomic # 6 Polarization: -5.09 SS G_CDS: -0.40 Total: -5.49 kcal Atomic # 7 Polarization: -41.73 SS G_CDS: 0.11 Total: -41.63 kcal Atomic # 8 Polarization: -9.42 SS G_CDS: -0.44 Total: -9.87 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.03 Total: 16.86 kcal Total LS contribution 3.55 Total: 3.55 kcal Total: -30.28 -5.86 -36.14 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000253283626.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.331 kcal (2) G-P(sol) polarization free energy of solvation -30.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds