Wall clock time and date at job start Sun Mar 29 2020 21:40:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 110.00244 * 2 1 4 4 C 1.54327 * 109.88317 * 121.10168 * 2 1 3 5 5 H 1.09003 * 110.71422 * 215.76333 * 4 2 1 6 6 C 1.52998 * 110.71780 * 338.85745 * 4 2 1 7 7 O 1.42900 * 109.47025 * 185.00346 * 6 4 2 8 8 C 1.55156 * 102.94352 * 97.22274 * 4 2 1 9 9 C 1.54909 * 101.58170 * 35.50355 * 8 4 2 10 10 N 1.47031 * 109.88127 * 238.90681 * 2 1 3 11 11 C 1.36938 * 125.64854 * 59.47859 * 10 2 1 12 12 H 1.08003 * 119.99712 * 0.02562 * 11 10 2 13 13 C 1.38811 * 119.99781 * 179.97438 * 11 10 2 14 14 N 1.31618 * 120.00156 * 0.02562 * 13 11 10 15 15 Si 1.86804 * 119.99707 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.46963 * 59.99932 * 15 13 11 17 17 H 1.48501 * 109.47065 * 179.97438 * 15 13 11 18 18 H 1.48496 * 109.46882 * 299.99903 * 15 13 11 19 19 H 1.09000 * 109.46935 * 298.90477 * 1 2 3 20 20 H 1.09003 * 109.46781 * 58.90386 * 1 2 3 21 21 H 1.08995 * 109.47287 * 178.90065 * 1 2 3 22 22 H 1.09009 * 109.47166 * 305.00277 * 6 4 2 23 23 H 1.09001 * 109.47305 * 64.99845 * 6 4 2 24 24 H 0.96703 * 114.00158 * 180.02562 * 7 6 4 25 25 H 1.09005 * 111.00352 * 153.57738 * 8 4 2 26 26 H 1.08996 * 111.00130 * 277.42537 * 8 4 2 27 27 H 1.09000 * 110.36621 * 81.82836 * 9 8 4 28 28 H 1.09000 * 110.36575 * 204.15280 * 9 8 4 29 29 H 0.96997 * 119.99568 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9029 1.0242 0.0000 4 6 2.0549 -0.7497 1.2427 5 1 2.9640 -0.2814 1.6200 6 6 0.9838 -0.8051 2.3338 7 8 1.5336 -1.3997 3.5111 8 6 2.3519 -2.1696 0.6922 9 6 2.8568 -1.8498 -0.7369 10 7 2.0300 -0.7141 -1.1840 11 6 1.7700 -0.3800 -2.4863 12 1 1.1490 0.4746 -2.7109 13 6 2.3055 -1.1392 -3.5177 14 7 3.0627 -2.1804 -3.2440 15 14 1.9513 -0.6831 -5.2943 16 1 2.4512 0.6893 -5.5620 17 1 2.6348 -1.6434 -6.1976 18 1 0.4869 -0.7324 -5.5354 19 1 -0.3633 0.4967 0.8997 20 1 -0.3633 0.5308 -0.8800 21 1 -0.3633 -1.0274 -0.0197 22 1 0.6445 0.2055 2.5616 23 1 0.1406 -1.4015 1.9853 24 1 0.9088 -1.4678 4.2460 25 1 3.1271 -2.6620 1.2794 26 1 1.4452 -2.7737 0.6602 27 1 3.9092 -1.5667 -0.7129 28 1 2.7088 -2.7080 -1.3924 29 1 3.4365 -2.7110 -3.9647 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306470508.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:46 Heat of formation + Delta-G solvation = -29.960277 kcal Electronic energy + Delta-G solvation = -11882.154365 eV Core-core repulsion = 9805.898841 eV Total energy + Delta-G solvation = -2076.255525 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.36434 -35.98093 -32.74680 -30.19694 -29.73183 -26.13757 -24.11362 -23.24225 -20.12775 -18.37539 -17.19160 -16.80557 -15.03547 -14.73774 -14.04675 -13.76146 -12.85637 -12.81774 -12.22652 -11.70303 -11.47190 -11.39335 -11.05348 -10.74293 -10.64759 -10.12314 -10.03467 -9.73380 -9.62266 -9.56941 -9.27744 -8.59459 -6.79288 -5.59179 -3.01106 3.43186 3.47063 3.48700 4.44238 4.61000 5.30989 5.40122 5.48951 5.58999 5.84764 5.88297 6.06083 6.11068 6.26829 6.30284 6.44334 6.66943 6.74485 6.86638 6.92989 7.17873 7.61372 7.69782 7.85868 7.93473 8.43076 9.28063 9.89338 10.55364 11.44367 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.076742 B = 0.011499 C = 0.010382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 364.770878 B = 2434.422822 C = 2696.337061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.164 3.836 3 H 0.032 0.968 4 C -0.097 4.097 5 H 0.074 0.926 6 C 0.088 3.912 7 O -0.576 6.576 8 C -0.132 4.132 9 C 0.150 3.850 10 N -0.598 5.598 11 C -0.219 4.219 12 H 0.076 0.924 13 C -0.013 4.013 14 N -0.923 5.923 15 Si 0.914 3.086 16 H -0.286 1.286 17 H -0.290 1.290 18 H -0.286 1.286 19 H 0.039 0.961 20 H 0.051 0.949 21 H 0.051 0.949 22 H 0.041 0.959 23 H 0.048 0.952 24 H 0.371 0.629 25 H 0.057 0.943 26 H 0.056 0.944 27 H 0.011 0.989 28 H 0.105 0.895 29 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.386 1.816 8.896 10.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.056 3.944 3 H 0.050 0.950 4 C -0.116 4.116 5 H 0.092 0.908 6 C 0.010 3.990 7 O -0.380 6.380 8 C -0.171 4.171 9 C 0.025 3.975 10 N -0.323 5.323 11 C -0.347 4.347 12 H 0.094 0.906 13 C -0.208 4.208 14 N -0.571 5.571 15 Si 0.744 3.256 16 H -0.213 1.213 17 H -0.216 1.216 18 H -0.212 1.212 19 H 0.058 0.942 20 H 0.070 0.930 21 H 0.070 0.930 22 H 0.059 0.941 23 H 0.066 0.934 24 H 0.216 0.784 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.029 0.971 28 H 0.123 0.877 29 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -3.780 1.710 8.265 9.248 hybrid contribution -0.684 0.360 -0.593 0.974 sum -4.464 2.070 7.672 9.114 Atomic orbital electron populations 1.22335 0.98543 1.01128 0.99780 1.20792 0.92270 0.94507 0.86834 0.95035 1.22133 0.97592 0.98574 0.93322 0.90777 1.22374 0.95941 0.95652 0.85005 1.86507 1.42627 1.84577 1.24320 1.22976 1.00365 0.94576 0.99154 1.21954 0.92043 0.93328 0.90184 1.44562 1.57016 1.30537 1.00150 1.19004 1.25418 1.09527 0.80783 0.90607 1.24784 0.99979 0.98040 0.97990 1.69811 1.37775 1.19434 1.30129 0.86165 0.77617 0.77369 0.84419 1.21279 1.21611 1.21235 0.94212 0.93008 0.92974 0.94131 0.93362 0.78399 0.92394 0.92508 0.97089 0.87715 0.93761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.98 8.02 37.16 0.30 -2.68 15 2 C 0.16 3.50 3.69 -66.94 -0.25 3.26 15 3 H 0.03 0.69 8.14 -51.93 -0.42 0.27 15 4 C -0.10 -1.86 3.14 -88.79 -0.28 -2.13 15 5 H 0.07 1.43 8.14 -51.93 -0.42 1.01 15 6 C 0.09 1.35 5.16 37.16 0.19 1.54 15 7 O -0.58 -8.41 13.60 -35.23 -0.48 -8.89 15 8 C -0.13 -2.75 6.48 -24.58 -0.16 -2.91 15 9 C 0.15 3.82 5.89 -2.53 -0.01 3.80 15 10 N -0.60 -15.68 3.14 -162.56 -0.51 -16.19 15 11 C -0.22 -6.18 9.82 -15.06 -0.15 -6.33 15 12 H 0.08 2.06 7.74 -52.48 -0.41 1.65 15 13 C -0.01 -0.36 5.49 -17.43 -0.10 -0.46 15 14 N -0.92 -27.49 10.09 55.49 0.56 -26.93 15 15 Si 0.91 22.38 29.55 -169.99 -5.02 17.36 15 16 H -0.29 -6.92 7.11 56.52 0.40 -6.52 15 17 H -0.29 -7.15 7.11 56.52 0.40 -6.75 15 18 H -0.29 -6.87 7.11 56.52 0.40 -6.47 15 19 H 0.04 0.61 6.53 -51.93 -0.34 0.27 15 20 H 0.05 1.01 7.92 -51.93 -0.41 0.60 15 21 H 0.05 1.01 7.63 -51.93 -0.40 0.61 15 22 H 0.04 0.56 7.30 -51.92 -0.38 0.18 15 23 H 0.05 0.73 6.84 -51.93 -0.36 0.37 15 24 H 0.37 3.40 9.12 45.56 0.42 3.82 15 25 H 0.06 1.13 8.14 -51.93 -0.42 0.71 15 26 H 0.06 1.16 7.94 -51.93 -0.41 0.75 15 27 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 15 28 H 0.11 2.97 5.87 -51.93 -0.31 2.66 15 29 H 0.25 7.28 8.31 -40.82 -0.34 6.94 15 LS Contribution 233.15 15.07 3.51 3.51 Total: -1.00 -31.27 233.15 -5.81 -37.08 By element: Atomic # 1 Polarization: 3.39 SS G_CDS: -3.41 Total: -0.02 kcal Atomic # 6 Polarization: -5.46 SS G_CDS: -0.45 Total: -5.91 kcal Atomic # 7 Polarization: -43.17 SS G_CDS: 0.05 Total: -43.12 kcal Atomic # 8 Polarization: -8.41 SS G_CDS: -0.48 Total: -8.89 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 3.51 Total: 3.51 kcal Total: -31.27 -5.81 -37.08 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306470508.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.115 kcal (2) G-P(sol) polarization free energy of solvation -31.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds