Wall clock time and date at job start Sun Mar 29 2020 21:40:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 110.00244 * 2 1 4 4 C 1.54327 * 109.88317 * 121.10168 * 2 1 3 5 5 H 1.09003 * 110.71422 * 215.76333 * 4 2 1 6 6 C 1.52998 * 110.71780 * 338.85745 * 4 2 1 7 7 O 1.42900 * 109.47025 * 185.00346 * 6 4 2 8 8 C 1.55156 * 102.94352 * 97.22274 * 4 2 1 9 9 C 1.54909 * 101.58170 * 35.50355 * 8 4 2 10 10 N 1.47031 * 109.88127 * 238.90681 * 2 1 3 11 11 C 1.36938 * 125.64854 * 59.47859 * 10 2 1 12 12 H 1.08003 * 119.99712 * 0.02562 * 11 10 2 13 13 C 1.38811 * 119.99781 * 179.97438 * 11 10 2 14 14 N 1.31618 * 120.00156 * 0.02562 * 13 11 10 15 15 Si 1.86804 * 119.99707 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.46963 * 59.99932 * 15 13 11 17 17 H 1.48501 * 109.47065 * 179.97438 * 15 13 11 18 18 H 1.48496 * 109.46882 * 299.99903 * 15 13 11 19 19 H 1.09000 * 109.46935 * 298.90477 * 1 2 3 20 20 H 1.09003 * 109.46781 * 58.90386 * 1 2 3 21 21 H 1.08995 * 109.47287 * 178.90065 * 1 2 3 22 22 H 1.09009 * 109.47166 * 305.00277 * 6 4 2 23 23 H 1.09001 * 109.47305 * 64.99845 * 6 4 2 24 24 H 0.96703 * 114.00158 * 180.02562 * 7 6 4 25 25 H 1.09005 * 111.00352 * 153.57738 * 8 4 2 26 26 H 1.08996 * 111.00130 * 277.42537 * 8 4 2 27 27 H 1.09000 * 110.36621 * 81.82836 * 9 8 4 28 28 H 1.09000 * 110.36575 * 204.15280 * 9 8 4 29 29 H 0.96997 * 119.99568 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9029 1.0242 0.0000 4 6 2.0549 -0.7497 1.2427 5 1 2.9640 -0.2814 1.6200 6 6 0.9838 -0.8051 2.3338 7 8 1.5336 -1.3997 3.5111 8 6 2.3519 -2.1696 0.6922 9 6 2.8568 -1.8498 -0.7369 10 7 2.0300 -0.7141 -1.1840 11 6 1.7700 -0.3800 -2.4863 12 1 1.1490 0.4746 -2.7109 13 6 2.3055 -1.1392 -3.5177 14 7 3.0627 -2.1804 -3.2440 15 14 1.9513 -0.6831 -5.2943 16 1 2.4512 0.6893 -5.5620 17 1 2.6348 -1.6434 -6.1976 18 1 0.4869 -0.7324 -5.5354 19 1 -0.3633 0.4967 0.8997 20 1 -0.3633 0.5308 -0.8800 21 1 -0.3633 -1.0274 -0.0197 22 1 0.6445 0.2055 2.5616 23 1 0.1406 -1.4015 1.9853 24 1 0.9088 -1.4678 4.2460 25 1 3.1271 -2.6620 1.2794 26 1 1.4452 -2.7737 0.6602 27 1 3.9092 -1.5667 -0.7129 28 1 2.7088 -2.7080 -1.3924 29 1 3.4365 -2.7110 -3.9647 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306470508.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:46 Heat of formation + Delta-G solvation = -52.896319 kcal Electronic energy + Delta-G solvation = -11883.148947 eV Core-core repulsion = 9805.898841 eV Total energy + Delta-G solvation = -2077.250106 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.99352 -37.28677 -34.69591 -31.91359 -31.62145 -27.83162 -25.95124 -24.85015 -22.05071 -19.97735 -18.86474 -18.31085 -16.81172 -16.54107 -15.69267 -15.31820 -14.61477 -14.32483 -13.87294 -13.36024 -13.25574 -13.14064 -12.91118 -12.61792 -12.29471 -12.01179 -11.73445 -11.44806 -11.33997 -11.27903 -10.71882 -10.65939 -8.88155 -7.74641 -5.19211 1.46409 1.50090 1.56389 2.50540 3.33322 3.37194 3.66466 3.89304 4.12328 4.30211 4.49912 4.58914 4.60453 4.68954 4.77320 4.88014 4.99251 5.15548 5.24128 5.33145 5.50530 5.60386 5.65460 5.84193 6.32373 7.03328 7.12647 7.81443 8.46648 9.27551 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.076742 B = 0.011499 C = 0.010382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 364.770878 B = 2434.422822 C = 2696.337061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.152 3.848 3 H 0.029 0.971 4 C -0.091 4.091 5 H 0.069 0.931 6 C 0.098 3.902 7 O -0.591 6.591 8 C -0.118 4.118 9 C 0.151 3.849 10 N -0.619 5.619 11 C -0.231 4.231 12 H 0.082 0.918 13 C -0.072 4.072 14 N -0.953 5.953 15 Si 0.981 3.019 16 H -0.279 1.279 17 H -0.295 1.295 18 H -0.275 1.275 19 H 0.082 0.918 20 H 0.037 0.963 21 H 0.044 0.956 22 H 0.066 0.934 23 H 0.055 0.945 24 H 0.397 0.603 25 H 0.069 0.931 26 H 0.061 0.939 27 H -0.019 1.019 28 H 0.072 0.928 29 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.836 2.664 10.103 11.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.046 3.954 3 H 0.046 0.954 4 C -0.110 4.110 5 H 0.087 0.913 6 C 0.020 3.980 7 O -0.400 6.400 8 C -0.157 4.157 9 C 0.026 3.974 10 N -0.344 5.344 11 C -0.360 4.360 12 H 0.100 0.900 13 C -0.264 4.264 14 N -0.603 5.603 15 Si 0.809 3.191 16 H -0.205 1.205 17 H -0.221 1.221 18 H -0.201 1.201 19 H 0.101 0.899 20 H 0.057 0.943 21 H 0.063 0.937 22 H 0.084 0.916 23 H 0.073 0.927 24 H 0.246 0.754 25 H 0.088 0.912 26 H 0.080 0.920 27 H -0.001 1.001 28 H 0.090 0.910 29 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -5.265 2.581 9.521 11.181 hybrid contribution -0.202 0.119 -0.901 0.931 sum -5.467 2.700 8.619 10.558 Atomic orbital electron populations 1.22188 0.95996 1.01057 1.01297 1.21057 0.94155 0.94061 0.86160 0.95368 1.22070 0.98863 0.96347 0.93746 0.91268 1.22163 0.94115 0.97407 0.84278 1.86435 1.44082 1.84535 1.24921 1.22795 1.00614 0.96162 0.96086 1.21724 0.90787 0.92207 0.92663 1.44860 1.57266 1.31279 1.01017 1.19397 1.24973 1.09481 0.82145 0.89991 1.25660 1.00331 0.98292 1.02151 1.70075 1.38970 1.20507 1.30783 0.85108 0.77729 0.76985 0.79253 1.20527 1.22115 1.20109 0.89934 0.94333 0.93665 0.91566 0.92655 0.75370 0.91248 0.92004 1.00116 0.91012 0.94479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.11 8.02 71.98 0.58 -4.53 15 2 C 0.15 6.30 3.69 45.34 0.17 6.47 15 3 H 0.03 1.20 8.14 -2.39 -0.02 1.18 15 4 C -0.09 -3.30 3.14 -9.61 -0.03 -3.33 15 5 H 0.07 2.56 8.14 -2.39 -0.02 2.54 15 6 C 0.10 2.62 5.16 71.98 0.37 2.99 15 7 O -0.59 -14.93 13.60 -148.98 -2.03 -16.96 15 8 C -0.12 -4.83 6.48 31.99 0.21 -4.62 15 9 C 0.15 7.94 5.89 86.86 0.51 8.46 15 10 N -0.62 -32.78 3.14 -668.23 -2.10 -34.88 15 11 C -0.23 -13.16 9.82 84.03 0.82 -12.34 15 12 H 0.08 4.44 7.74 -2.91 -0.02 4.42 15 13 C -0.07 -4.20 5.49 84.86 0.47 -3.74 15 14 N -0.95 -58.60 10.09 21.65 0.22 -58.38 15 15 Si 0.98 46.48 29.55 68.60 2.03 48.51 15 16 H -0.28 -12.79 7.11 99.48 0.71 -12.08 15 17 H -0.29 -14.07 7.11 99.48 0.71 -13.36 15 18 H -0.28 -12.46 7.11 99.48 0.71 -11.75 15 19 H 0.08 2.16 6.53 -2.39 -0.02 2.14 15 20 H 0.04 1.42 7.92 -2.39 -0.02 1.40 15 21 H 0.04 1.63 7.63 -2.39 -0.02 1.61 15 22 H 0.07 1.47 7.30 -2.38 -0.02 1.45 15 23 H 0.06 1.43 6.84 -2.39 -0.02 1.41 15 24 H 0.40 5.52 9.12 -74.06 -0.68 4.85 15 25 H 0.07 2.65 8.14 -2.38 -0.02 2.63 15 26 H 0.06 2.46 7.94 -2.39 -0.02 2.44 15 27 H -0.02 -1.09 8.14 -2.39 -0.02 -1.11 15 28 H 0.07 4.25 5.87 -2.39 -0.01 4.23 15 29 H 0.25 14.68 8.31 -92.71 -0.77 13.91 15 Total: -1.00 -68.10 233.15 1.67 -66.43 By element: Atomic # 1 Polarization: 5.46 SS G_CDS: 0.46 Total: 5.91 kcal Atomic # 6 Polarization: -13.74 SS G_CDS: 3.10 Total: -10.64 kcal Atomic # 7 Polarization: -91.38 SS G_CDS: -1.88 Total: -93.26 kcal Atomic # 8 Polarization: -14.93 SS G_CDS: -2.03 Total: -16.96 kcal Atomic # 14 Polarization: 46.48 SS G_CDS: 2.03 Total: 48.51 kcal Total: -68.10 1.67 -66.43 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306470508.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.538 kcal (2) G-P(sol) polarization free energy of solvation -68.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds