Wall clock time and date at job start Sun Mar 29 2020 21:50:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86806 * 120.00073 * 2 1 4 4 H 1.48506 * 109.46549 * 269.99163 * 3 2 1 5 5 H 1.48503 * 109.47075 * 29.98972 * 3 2 1 6 6 H 1.48496 * 109.46994 * 149.99580 * 3 2 1 7 7 C 1.37872 * 119.99876 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00122 * 0.02562 * 7 2 1 9 9 C 1.50705 * 119.99887 * 180.02562 * 7 2 1 10 10 N 1.46905 * 109.47145 * 180.02562 * 9 7 2 11 11 C 1.46895 * 111.00134 * 179.97438 * 10 9 7 12 12 H 1.08997 * 110.83658 * 322.81077 * 11 10 9 13 13 C 1.55002 * 110.90332 * 86.45584 * 11 10 9 14 14 O 1.44388 * 103.63001 * 155.14415 * 13 11 10 15 15 C 1.43889 * 106.89814 * 320.15830 * 14 13 11 16 16 C 1.54099 * 107.37252 * 26.27302 * 15 14 13 17 17 H 1.09004 * 110.59847 * 116.83498 * 16 15 14 18 18 O 1.42907 * 110.48886 * 239.42234 * 16 15 14 19 19 H 0.97000 * 119.99591 * 0.02562 * 1 2 3 20 20 H 1.08998 * 109.47359 * 60.00897 * 9 7 2 21 21 H 1.08994 * 109.47237 * 300.00279 * 9 7 2 22 22 H 1.00902 * 110.99846 * 303.96171 * 10 9 7 23 23 H 1.09002 * 110.61909 * 273.72402 * 13 11 10 24 24 H 1.09000 * 110.61709 * 36.56299 * 13 11 10 25 25 H 1.09001 * 109.72815 * 266.88630 * 15 14 13 26 26 H 1.08993 * 110.07152 * 145.85488 * 15 14 13 27 27 H 0.96698 * 113.99872 * 294.77422 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4968 2.0462 -1.4002 5 1 1.4465 2.6528 0.6998 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0011 10 7 4.0012 -2.5791 0.0010 11 6 5.4696 -2.6183 0.0009 12 1 5.8789 -1.8173 -0.6148 13 6 6.0249 -2.5437 1.4462 14 8 7.3193 -3.1756 1.3464 15 6 7.1671 -4.3043 0.4670 16 6 5.9855 -3.9985 -0.4737 17 1 6.3233 -3.9442 -1.5086 18 8 4.9651 -4.9891 -0.3334 19 1 -0.4849 0.8401 -0.0004 20 1 3.8745 -0.6801 0.8912 21 1 3.8752 -0.6804 -0.8888 22 1 3.6253 -3.0955 0.7820 23 1 6.1277 -1.5063 1.7648 24 1 5.3815 -3.0931 2.1334 25 1 6.9538 -5.1996 1.0510 26 1 8.0766 -4.4499 -0.1156 27 1 5.2341 -5.8738 -0.6164 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306797390.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:09 Heat of formation + Delta-G solvation = -87.045569 kcal Electronic energy + Delta-G solvation = -11735.215329 eV Core-core repulsion = 9493.339827 eV Total energy + Delta-G solvation = -2241.875502 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 187.100 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.58118 -35.86420 -34.98525 -32.38081 -29.62569 -28.42021 -25.99361 -22.74989 -21.28532 -20.48496 -17.51406 -16.97909 -16.06936 -15.43497 -15.09502 -14.42642 -13.86018 -13.57726 -13.23784 -12.72918 -12.48334 -11.91178 -11.87788 -11.22940 -10.99516 -10.58586 -10.42831 -9.89044 -9.81310 -9.66504 -9.29472 -8.59546 -7.43336 -6.05922 -4.04157 3.28286 3.35479 3.37046 3.90338 4.40302 4.41417 4.68213 4.87674 4.98570 5.24565 5.27788 5.37129 5.54895 5.70988 5.81591 5.95067 6.11299 6.70391 6.85319 6.98483 7.55364 7.75260 7.93762 8.33467 8.64384 9.03225 9.55499 11.07393 Molecular weight = 187.10amu Principal moments of inertia in cm(-1) A = 0.062823 B = 0.010060 C = 0.009101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 445.590303 B = 2782.506261 C = 3075.872281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.069 3.931 3 Si 0.877 3.123 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.268 1.268 7 C -0.516 4.516 8 H 0.080 0.920 9 C 0.161 3.839 10 N -0.650 5.650 11 C 0.063 3.937 12 H 0.096 0.904 13 C 0.015 3.985 14 O -0.379 6.379 15 C 0.014 3.986 16 C 0.078 3.922 17 H 0.070 0.930 18 O -0.535 6.535 19 H 0.264 0.736 20 H -0.016 1.016 21 H 0.022 0.978 22 H 0.345 0.655 23 H 0.092 0.908 24 H 0.064 0.936 25 H 0.063 0.937 26 H 0.084 0.916 27 H 0.368 0.632 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.364 -6.542 0.250 14.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.133 4.133 3 Si 0.705 3.295 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.193 1.193 7 C -0.554 4.554 8 H 0.098 0.902 9 C 0.033 3.967 10 N -0.281 5.281 11 C -0.050 4.050 12 H 0.114 0.886 13 C -0.064 4.064 14 O -0.297 6.297 15 C -0.064 4.064 16 C 0.017 3.983 17 H 0.088 0.912 18 O -0.339 6.339 19 H 0.074 0.926 20 H 0.002 0.998 21 H 0.040 0.960 22 H 0.164 0.836 23 H 0.110 0.890 24 H 0.083 0.917 25 H 0.081 0.919 26 H 0.102 0.898 27 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 12.990 -5.901 -0.097 14.267 hybrid contribution 0.767 0.667 0.574 1.168 sum 13.757 -5.233 0.477 14.726 Atomic orbital electron populations 1.69901 1.06161 1.26879 1.50913 1.24905 0.94756 0.98917 0.94726 0.86828 0.80242 0.83864 0.78595 1.20128 1.21167 1.19272 1.21048 0.88842 0.94911 1.50630 0.90169 1.20104 0.96908 0.84935 0.94723 1.60261 1.01712 1.16084 1.50065 1.23187 0.92323 0.94823 0.94642 0.88561 1.24516 0.84625 0.98513 0.98706 1.88861 1.30406 1.43264 1.67183 1.24042 0.99259 0.90490 0.92589 1.23168 0.87273 0.90013 0.97850 0.91188 1.86732 1.38980 1.19784 1.88360 0.92625 0.99801 0.95988 0.83595 0.88968 0.91747 0.91864 0.89807 0.78618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.88 13.96 55.43 0.77 -27.11 15 2 C 0.07 2.01 5.47 -17.82 -0.10 1.92 15 3 Si 0.88 21.64 27.47 -169.99 -4.67 16.97 15 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 15 5 H -0.29 -6.97 7.11 56.52 0.40 -6.56 15 6 H -0.27 -6.34 6.54 56.52 0.37 -5.97 15 7 C -0.52 -14.98 9.87 -34.44 -0.34 -15.32 15 8 H 0.08 2.54 8.06 -52.49 -0.42 2.11 15 9 C 0.16 3.93 4.37 -4.97 -0.02 3.91 15 10 N -0.65 -13.81 5.65 -105.87 -0.60 -14.41 15 11 C 0.06 1.08 3.37 -65.71 -0.22 0.86 15 12 H 0.10 1.63 7.91 -51.93 -0.41 1.22 15 13 C 0.01 0.24 7.28 38.21 0.28 0.52 15 14 O -0.38 -5.88 11.54 -35.23 -0.41 -6.28 15 15 C 0.01 0.17 7.52 37.73 0.28 0.46 15 16 C 0.08 1.08 4.37 -25.21 -0.11 0.97 15 17 H 0.07 0.87 8.14 -51.93 -0.42 0.45 15 18 O -0.54 -7.72 12.39 -35.23 -0.44 -8.16 15 19 H 0.26 7.62 8.31 -40.82 -0.34 7.28 15 20 H -0.02 -0.38 7.20 -51.93 -0.37 -0.75 15 21 H 0.02 0.54 7.52 -51.93 -0.39 0.15 15 22 H 0.34 7.37 8.13 -39.29 -0.32 7.05 15 23 H 0.09 1.45 8.14 -51.93 -0.42 1.03 15 24 H 0.06 1.04 7.82 -51.93 -0.41 0.64 15 25 H 0.06 0.72 7.97 -51.93 -0.41 0.31 15 26 H 0.08 0.83 8.14 -51.93 -0.42 0.41 15 27 H 0.37 3.35 9.12 45.56 0.42 3.76 15 LS Contribution 230.45 15.07 3.47 3.47 Total: -1.00 -32.50 230.45 -4.85 -37.34 By element: Atomic # 1 Polarization: 7.62 SS G_CDS: -2.76 Total: 4.86 kcal Atomic # 6 Polarization: -6.46 SS G_CDS: -0.23 Total: -6.69 kcal Atomic # 7 Polarization: -41.70 SS G_CDS: 0.18 Total: -41.52 kcal Atomic # 8 Polarization: -13.60 SS G_CDS: -0.84 Total: -14.44 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.67 Total: 16.97 kcal Total LS contribution 3.47 Total: 3.47 kcal Total: -32.50 -4.85 -37.34 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306797390.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.701 kcal (2) G-P(sol) polarization free energy of solvation -32.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds