Wall clock time and date at job start Sun Mar 29 2020 21:50:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86806 * 120.00073 * 2 1 4 4 H 1.48506 * 109.46549 * 269.99163 * 3 2 1 5 5 H 1.48503 * 109.47075 * 29.98972 * 3 2 1 6 6 H 1.48496 * 109.46994 * 149.99580 * 3 2 1 7 7 C 1.37872 * 119.99876 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00122 * 0.02562 * 7 2 1 9 9 C 1.50705 * 119.99887 * 180.02562 * 7 2 1 10 10 N 1.46905 * 109.47145 * 180.02562 * 9 7 2 11 11 C 1.46895 * 111.00134 * 179.97438 * 10 9 7 12 12 H 1.08997 * 110.83658 * 322.81077 * 11 10 9 13 13 C 1.55002 * 110.90332 * 86.45584 * 11 10 9 14 14 O 1.44388 * 103.63001 * 155.14415 * 13 11 10 15 15 C 1.43889 * 106.89814 * 320.15830 * 14 13 11 16 16 C 1.54099 * 107.37252 * 26.27302 * 15 14 13 17 17 H 1.09004 * 110.59847 * 116.83498 * 16 15 14 18 18 O 1.42907 * 110.48886 * 239.42234 * 16 15 14 19 19 H 0.97000 * 119.99591 * 0.02562 * 1 2 3 20 20 H 1.08998 * 109.47359 * 60.00897 * 9 7 2 21 21 H 1.08994 * 109.47237 * 300.00279 * 9 7 2 22 22 H 1.00902 * 110.99846 * 303.96171 * 10 9 7 23 23 H 1.09002 * 110.61909 * 273.72402 * 13 11 10 24 24 H 1.09000 * 110.61709 * 36.56299 * 13 11 10 25 25 H 1.09001 * 109.72815 * 266.88630 * 15 14 13 26 26 H 1.08993 * 110.07152 * 145.85488 * 15 14 13 27 27 H 0.96698 * 113.99872 * 294.77422 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4968 2.0462 -1.4002 5 1 1.4465 2.6528 0.6998 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0011 10 7 4.0012 -2.5791 0.0010 11 6 5.4696 -2.6183 0.0009 12 1 5.8789 -1.8173 -0.6148 13 6 6.0249 -2.5437 1.4462 14 8 7.3193 -3.1756 1.3464 15 6 7.1671 -4.3043 0.4670 16 6 5.9855 -3.9985 -0.4737 17 1 6.3233 -3.9442 -1.5086 18 8 4.9651 -4.9891 -0.3334 19 1 -0.4849 0.8401 -0.0004 20 1 3.8745 -0.6801 0.8912 21 1 3.8752 -0.6804 -0.8888 22 1 3.6253 -3.0955 0.7820 23 1 6.1277 -1.5063 1.7648 24 1 5.3815 -3.0931 2.1334 25 1 6.9538 -5.1996 1.0510 26 1 8.0766 -4.4499 -0.1156 27 1 5.2341 -5.8738 -0.6164 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306797390.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:09 Heat of formation + Delta-G solvation = -115.670864 kcal Electronic energy + Delta-G solvation = -11736.456615 eV Core-core repulsion = 9493.339827 eV Total energy + Delta-G solvation = -2243.116788 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 187.100 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.76131 -37.00465 -36.63161 -34.48383 -31.15506 -29.66502 -27.77375 -24.02378 -23.14695 -21.76629 -19.01874 -18.66178 -17.42449 -16.75800 -16.35618 -16.18008 -15.37767 -14.98626 -14.79642 -14.40744 -13.94460 -13.61654 -13.27581 -12.81713 -12.52222 -12.23074 -12.05332 -11.73591 -11.41121 -10.95357 -10.82476 -10.75398 -9.08357 -8.30678 -6.35899 1.35225 1.36966 1.47825 2.33635 2.73908 3.03148 3.37466 3.53016 3.63089 3.76979 4.05748 4.21912 4.42262 4.63385 4.71139 4.73583 4.77754 4.95874 5.06051 5.49560 5.70149 5.94158 6.53204 6.59638 6.73648 7.03735 7.29044 8.86319 Molecular weight = 187.10amu Principal moments of inertia in cm(-1) A = 0.062823 B = 0.010060 C = 0.009101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 445.590303 B = 2782.506261 C = 3075.872281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.008 3.992 3 Si 0.953 3.047 4 H -0.265 1.265 5 H -0.281 1.281 6 H -0.248 1.248 7 C -0.531 4.531 8 H 0.034 0.966 9 C 0.172 3.828 10 N -0.659 5.659 11 C 0.050 3.950 12 H 0.100 0.900 13 C 0.022 3.978 14 O -0.390 6.390 15 C 0.016 3.984 16 C 0.083 3.917 17 H 0.089 0.911 18 O -0.561 6.561 19 H 0.268 0.732 20 H -0.009 1.009 21 H 0.026 0.974 22 H 0.340 0.660 23 H 0.093 0.907 24 H 0.058 0.942 25 H 0.074 0.926 26 H 0.115 0.885 27 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.707 -6.147 0.018 16.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.190 4.190 3 Si 0.776 3.224 4 H -0.189 1.189 5 H -0.206 1.206 6 H -0.172 1.172 7 C -0.569 4.569 8 H 0.053 0.947 9 C 0.044 3.956 10 N -0.290 5.290 11 C -0.061 4.061 12 H 0.118 0.882 13 C -0.057 4.057 14 O -0.309 6.309 15 C -0.061 4.061 16 C 0.023 3.977 17 H 0.107 0.893 18 O -0.368 6.368 19 H 0.077 0.923 20 H 0.008 0.992 21 H 0.044 0.956 22 H 0.159 0.841 23 H 0.111 0.889 24 H 0.076 0.924 25 H 0.092 0.908 26 H 0.133 0.867 27 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 15.365 -5.550 -0.338 16.340 hybrid contribution 0.006 0.396 0.631 0.745 sum 15.372 -5.154 0.293 16.215 Atomic orbital electron populations 1.70061 1.08270 1.28298 1.52210 1.25911 0.95665 1.03405 0.94011 0.85630 0.79343 0.78097 0.79334 1.18945 1.20610 1.17177 1.21330 0.91467 0.93417 1.50690 0.94745 1.19852 0.93757 0.87073 0.94919 1.60154 1.04667 1.14045 1.50139 1.23370 0.89548 0.97395 0.95822 0.88227 1.24334 0.84946 0.98693 0.97735 1.88851 1.29739 1.44281 1.68012 1.24210 0.99910 0.89740 0.92228 1.23139 0.87256 0.88171 0.99180 0.89297 1.86671 1.39912 1.21443 1.88756 0.92295 0.99182 0.95552 0.84145 0.88876 0.92375 0.90830 0.86709 0.75949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.03 13.96 21.45 0.30 -59.73 15 2 C 0.01 0.45 5.47 84.65 0.46 0.91 15 3 Si 0.95 44.13 27.47 68.60 1.88 46.02 15 4 H -0.26 -11.74 7.11 99.48 0.71 -11.03 15 5 H -0.28 -12.68 7.11 99.48 0.71 -11.97 15 6 H -0.25 -10.62 6.54 99.48 0.65 -9.97 15 7 C -0.53 -31.45 9.87 25.60 0.25 -31.20 15 8 H 0.03 2.28 8.06 -2.91 -0.02 2.26 15 9 C 0.17 8.31 4.37 85.56 0.37 8.68 15 10 N -0.66 -27.72 5.65 -488.87 -2.76 -30.49 15 11 C 0.05 1.64 3.37 46.22 0.16 1.79 15 12 H 0.10 3.15 7.91 -2.39 -0.02 3.13 15 13 C 0.02 0.65 7.28 72.67 0.53 1.18 15 14 O -0.39 -11.07 11.54 -148.98 -1.72 -12.79 15 15 C 0.02 0.34 7.52 72.35 0.54 0.89 15 16 C 0.08 2.09 4.37 31.58 0.14 2.23 15 17 H 0.09 1.91 8.14 -2.39 -0.02 1.89 15 18 O -0.56 -15.13 12.39 -148.98 -1.85 -16.98 15 19 H 0.27 15.73 8.31 -92.71 -0.77 14.96 15 20 H -0.01 -0.44 7.20 -2.39 -0.02 -0.46 15 21 H 0.03 1.25 7.52 -2.39 -0.02 1.24 15 22 H 0.34 14.69 8.13 -89.69 -0.73 13.96 15 23 H 0.09 2.77 8.14 -2.39 -0.02 2.75 15 24 H 0.06 1.83 7.82 -2.39 -0.02 1.81 15 25 H 0.07 1.44 7.97 -2.39 -0.02 1.42 15 26 H 0.11 1.77 8.14 -2.39 -0.02 1.76 15 27 H 0.39 6.19 9.12 -74.06 -0.68 5.51 15 Total: -1.00 -70.26 230.45 -1.97 -72.23 By element: Atomic # 1 Polarization: 17.54 SS G_CDS: -0.28 Total: 17.25 kcal Atomic # 6 Polarization: -17.97 SS G_CDS: 2.46 Total: -15.51 kcal Atomic # 7 Polarization: -87.76 SS G_CDS: -2.46 Total: -90.22 kcal Atomic # 8 Polarization: -26.20 SS G_CDS: -3.56 Total: -29.77 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 1.88 Total: 46.02 kcal Total: -70.26 -1.97 -72.23 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306797390.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.440 kcal (2) G-P(sol) polarization free energy of solvation -70.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds