Wall clock time and date at job start Sun Mar 29 2020 21:54:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86801 * 119.99820 * 2 1 4 4 H 1.48500 * 109.47334 * 239.99836 * 3 2 1 5 5 H 1.48501 * 109.47202 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46940 * 120.00193 * 3 2 1 7 7 C 1.38808 * 120.00303 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00176 * 180.02562 * 7 2 1 9 9 N 1.36946 * 119.99979 * 359.97438 * 7 2 1 10 10 C 1.47019 * 125.64379 * 359.96265 * 9 7 2 11 11 C 1.54332 * 107.26822 * 181.09352 * 10 9 7 12 12 C 1.55157 * 102.94104 * 22.19013 * 11 10 9 13 13 F 1.39905 * 111.00369 * 82.57287 * 12 11 10 14 14 C 1.52998 * 111.03699 * 206.40853 * 12 11 10 15 15 O 1.42904 * 109.47324 * 176.79967 * 14 12 11 16 16 C 1.47419 * 125.65019 * 179.97438 * 9 7 2 17 17 H 0.97000 * 120.00584 * 359.97438 * 1 2 3 18 18 H 1.09002 * 109.88260 * 300.50735 * 10 9 7 19 19 H 1.09000 * 109.88568 * 61.67631 * 10 9 7 20 20 H 1.09000 * 110.72090 * 263.82981 * 11 10 9 21 21 H 1.08995 * 110.71892 * 140.55147 * 11 10 9 22 22 H 1.08999 * 109.47494 * 296.79887 * 14 12 11 23 23 H 1.09006 * 109.46864 * 56.79833 * 14 12 11 24 24 H 0.96691 * 113.99937 * 180.02562 * 15 14 12 25 25 H 1.09003 * 110.36435 * 37.00127 * 16 9 7 26 26 H 1.08997 * 110.36999 * 274.68300 * 16 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1375 -2.5328 0.0008 11 6 -0.4484 -4.0442 0.0284 12 6 0.8526 -4.6559 0.6121 13 9 0.8602 -4.5787 2.0090 14 6 1.0378 -6.1009 0.1447 15 8 2.2796 -6.6062 0.6394 16 6 1.9335 -3.7311 -0.0016 17 1 -0.4851 0.8400 0.0004 18 1 -0.5567 -2.0519 0.8846 19 1 -0.5551 -2.0848 -0.9009 20 1 -0.6324 -4.4185 -0.9787 21 1 -1.2977 -4.2513 0.6793 22 1 0.2196 -6.7132 0.5239 23 1 1.0408 -6.1328 -0.9449 24 1 2.4635 -7.5196 0.3809 25 1 2.8339 -3.7404 0.6127 26 1 2.1651 -4.0419 -1.0203 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307609749.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:26 Heat of formation + Delta-G solvation = -73.913846 kcal Electronic energy + Delta-G solvation = -12216.371050 eV Core-core repulsion = 9824.293199 eV Total energy + Delta-G solvation = -2392.077851 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 189.091 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -46.88007 -37.37925 -36.06227 -32.47848 -29.76488 -28.33385 -25.55279 -23.44381 -20.29883 -19.73356 -17.39215 -16.66841 -15.84122 -15.08711 -14.55736 -14.10009 -13.82632 -13.37010 -13.01768 -12.53912 -11.94694 -11.75038 -11.11083 -10.87702 -10.80977 -10.32388 -10.18072 -10.14821 -9.86458 -9.79520 -9.57358 -8.57734 -6.83076 -5.69324 -3.03147 3.43974 3.47545 3.49231 4.21733 4.51012 4.98179 4.99785 5.21616 5.35274 5.50273 5.53508 5.74911 5.88641 6.17369 6.38111 6.40549 6.65575 6.89758 7.53270 7.58835 7.68693 7.81872 8.26060 9.22945 9.82669 10.47340 11.43001 Molecular weight = 189.09amu Principal moments of inertia in cm(-1) A = 0.071137 B = 0.011266 C = 0.010513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 393.513409 B = 2484.672853 C = 2662.712171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.008 4.008 3 Si 0.915 3.085 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.229 4.229 8 H 0.079 0.921 9 N -0.605 5.605 10 C 0.178 3.822 11 C -0.161 4.161 12 C 0.101 3.899 13 F -0.197 7.197 14 C 0.068 3.932 15 O -0.563 6.563 16 C 0.127 3.873 17 H 0.253 0.747 18 H 0.051 0.949 19 H 0.049 0.951 20 H 0.075 0.925 21 H 0.074 0.926 22 H 0.052 0.948 23 H 0.063 0.937 24 H 0.375 0.625 25 H 0.053 0.947 26 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.018 -10.916 -1.440 11.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.204 4.204 3 Si 0.746 3.254 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.357 4.357 8 H 0.097 0.903 9 N -0.331 5.331 10 C 0.053 3.947 11 C -0.200 4.200 12 C 0.082 3.918 13 F -0.178 7.178 14 C -0.010 4.010 15 O -0.367 6.367 16 C 0.000 4.000 17 H 0.064 0.936 18 H 0.069 0.931 19 H 0.067 0.933 20 H 0.093 0.907 21 H 0.092 0.908 22 H 0.070 0.930 23 H 0.081 0.919 24 H 0.221 0.779 25 H 0.071 0.929 26 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -0.008 -10.050 -1.147 10.115 hybrid contribution 0.307 0.271 -0.152 0.437 sum 0.299 -9.778 -1.299 9.869 Atomic orbital electron populations 1.69936 1.04933 1.25230 1.57095 1.24814 0.95766 0.97741 1.02128 0.86143 0.78413 0.82937 0.77938 1.21122 1.21561 1.21095 1.19040 0.90508 0.82226 1.43886 0.90315 1.44462 1.01560 0.99840 1.87255 1.21185 0.84590 0.87293 1.01639 1.23483 0.95350 1.00628 1.00501 1.22127 0.99589 0.93534 0.76580 1.92813 1.97540 1.97288 1.30127 1.22649 0.86284 0.94028 0.98089 1.86591 1.39067 1.32909 1.78183 1.21962 0.94504 0.85989 0.97514 0.93649 0.93064 0.93272 0.90678 0.90774 0.93023 0.91913 0.77891 0.92869 0.94891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.83 10.31 55.49 0.57 -27.26 15 2 C -0.01 -0.25 5.49 -17.43 -0.10 -0.34 15 3 Si 0.92 22.66 29.55 -169.99 -5.02 17.63 15 4 H -0.28 -6.89 7.11 56.52 0.40 -6.49 15 5 H -0.29 -7.17 7.11 56.52 0.40 -6.77 15 6 H -0.28 -6.97 7.11 56.52 0.40 -6.57 15 7 C -0.23 -6.66 10.28 -15.06 -0.15 -6.82 15 8 H 0.08 2.21 7.83 -52.49 -0.41 1.80 15 9 N -0.60 -16.38 3.39 -170.06 -0.58 -16.96 15 10 C 0.18 4.48 5.37 -3.06 -0.02 4.47 15 11 C -0.16 -3.09 6.23 -24.89 -0.16 -3.24 15 12 C 0.10 1.99 1.37 -88.46 -0.12 1.87 15 13 F -0.20 -4.44 16.98 2.25 0.04 -4.40 15 14 C 0.07 1.00 6.30 37.16 0.23 1.23 15 15 O -0.56 -8.23 13.44 -35.23 -0.47 -8.70 15 16 C 0.13 2.88 6.34 -2.52 -0.02 2.86 15 17 H 0.25 7.38 8.31 -40.82 -0.34 7.04 15 18 H 0.05 1.44 7.38 -51.93 -0.38 1.06 15 19 H 0.05 1.32 7.51 -51.93 -0.39 0.93 15 20 H 0.07 1.23 8.04 -51.93 -0.42 0.81 15 21 H 0.07 1.30 8.14 -51.93 -0.42 0.88 15 22 H 0.05 0.65 8.14 -51.93 -0.42 0.23 15 23 H 0.06 0.78 8.13 -51.93 -0.42 0.36 15 24 H 0.37 3.21 9.12 45.56 0.42 3.63 15 25 H 0.05 1.25 8.14 -51.93 -0.42 0.83 15 26 H 0.03 0.70 8.03 -51.93 -0.42 0.29 15 LS Contribution 225.14 15.07 3.39 3.39 Total: -1.00 -33.42 225.14 -4.82 -38.25 By element: Atomic # 1 Polarization: 0.45 SS G_CDS: -2.43 Total: -1.97 kcal Atomic # 6 Polarization: 0.35 SS G_CDS: -0.33 Total: 0.02 kcal Atomic # 7 Polarization: -44.21 SS G_CDS: -0.01 Total: -44.22 kcal Atomic # 8 Polarization: -8.23 SS G_CDS: -0.47 Total: -8.70 kcal Atomic # 9 Polarization: -4.44 SS G_CDS: 0.04 Total: -4.40 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -5.02 Total: 17.63 kcal Total LS contribution 3.39 Total: 3.39 kcal Total: -33.42 -4.82 -38.25 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307609749.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.666 kcal (2) G-P(sol) polarization free energy of solvation -33.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds