Wall clock time and date at job start Sun Mar 29 2020 21:54:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86801 * 119.99820 * 2 1 4 4 H 1.48500 * 109.47334 * 239.99836 * 3 2 1 5 5 H 1.48501 * 109.47202 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46940 * 120.00193 * 3 2 1 7 7 C 1.38808 * 120.00303 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00176 * 180.02562 * 7 2 1 9 9 N 1.36946 * 119.99979 * 359.97438 * 7 2 1 10 10 C 1.47019 * 125.64379 * 359.96265 * 9 7 2 11 11 C 1.54332 * 107.26822 * 181.09352 * 10 9 7 12 12 C 1.55157 * 102.94104 * 22.19013 * 11 10 9 13 13 F 1.39905 * 111.00369 * 82.57287 * 12 11 10 14 14 C 1.52998 * 111.03699 * 206.40853 * 12 11 10 15 15 O 1.42904 * 109.47324 * 176.79967 * 14 12 11 16 16 C 1.47419 * 125.65019 * 179.97438 * 9 7 2 17 17 H 0.97000 * 120.00584 * 359.97438 * 1 2 3 18 18 H 1.09002 * 109.88260 * 300.50735 * 10 9 7 19 19 H 1.09000 * 109.88568 * 61.67631 * 10 9 7 20 20 H 1.09000 * 110.72090 * 263.82981 * 11 10 9 21 21 H 1.08995 * 110.71892 * 140.55147 * 11 10 9 22 22 H 1.08999 * 109.47494 * 296.79887 * 14 12 11 23 23 H 1.09006 * 109.46864 * 56.79833 * 14 12 11 24 24 H 0.96691 * 113.99937 * 180.02562 * 15 14 12 25 25 H 1.09003 * 110.36435 * 37.00127 * 16 9 7 26 26 H 1.08997 * 110.36999 * 274.68300 * 16 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1375 -2.5328 0.0008 11 6 -0.4484 -4.0442 0.0284 12 6 0.8526 -4.6559 0.6121 13 9 0.8602 -4.5787 2.0090 14 6 1.0378 -6.1009 0.1447 15 8 2.2796 -6.6062 0.6394 16 6 1.9335 -3.7311 -0.0016 17 1 -0.4851 0.8400 0.0004 18 1 -0.5567 -2.0519 0.8846 19 1 -0.5551 -2.0848 -0.9009 20 1 -0.6324 -4.4185 -0.9787 21 1 -1.2977 -4.2513 0.6793 22 1 0.2196 -6.7132 0.5239 23 1 1.0408 -6.1328 -0.9449 24 1 2.4635 -7.5196 0.3809 25 1 2.8339 -3.7404 0.6127 26 1 2.1651 -4.0419 -1.0203 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307609749.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:26 Heat of formation + Delta-G solvation = -99.767195 kcal Electronic energy + Delta-G solvation = -12217.492135 eV Core-core repulsion = 9824.293199 eV Total energy + Delta-G solvation = -2393.198937 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 189.091 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -48.53313 -38.98981 -37.40671 -34.47550 -31.65061 -30.01253 -27.40381 -25.14951 -22.24312 -21.29707 -19.10196 -18.12971 -17.39680 -16.77066 -16.48442 -15.76155 -15.48891 -15.02423 -14.67700 -14.09018 -13.73697 -13.47545 -13.05728 -12.79390 -12.56290 -12.13796 -12.08664 -11.89759 -11.65340 -11.35760 -10.93780 -10.73166 -8.96934 -7.89599 -5.26595 1.43947 1.48580 1.54829 2.46692 3.02035 3.28263 3.51282 3.65953 3.67081 3.80877 4.16273 4.47105 4.47993 4.57821 4.75178 4.86172 4.90335 5.28306 5.37629 5.55722 5.67888 6.14022 6.95699 7.04671 7.69806 8.33288 9.21060 Molecular weight = 189.09amu Principal moments of inertia in cm(-1) A = 0.071137 B = 0.011266 C = 0.010513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 393.513409 B = 2484.672853 C = 2662.712171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.065 4.065 3 Si 0.985 3.015 4 H -0.272 1.272 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.252 4.252 8 H 0.081 0.919 9 N -0.630 5.630 10 C 0.181 3.819 11 C -0.144 4.144 12 C 0.096 3.904 13 F -0.219 7.219 14 C 0.079 3.921 15 O -0.588 6.588 16 C 0.121 3.879 17 H 0.249 0.751 18 H 0.007 0.993 19 H 0.022 0.978 20 H 0.113 0.887 21 H 0.092 0.908 22 H 0.081 0.919 23 H 0.092 0.908 24 H 0.402 0.598 25 H 0.035 0.965 26 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.322 -12.389 -2.131 12.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.258 4.258 3 Si 0.812 3.188 4 H -0.198 1.198 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.381 4.381 8 H 0.099 0.901 9 N -0.356 5.356 10 C 0.056 3.944 11 C -0.182 4.182 12 C 0.077 3.923 13 F -0.200 7.200 14 C 0.000 4.000 15 O -0.397 6.397 16 C -0.005 4.005 17 H 0.059 0.941 18 H 0.026 0.974 19 H 0.041 0.959 20 H 0.131 0.869 21 H 0.111 0.889 22 H 0.099 0.901 23 H 0.110 0.890 24 H 0.253 0.747 25 H 0.054 0.946 26 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.317 -11.582 -1.847 11.732 hybrid contribution 0.256 0.698 0.071 0.747 sum 0.572 -10.883 -1.776 11.042 Atomic orbital electron populations 1.70166 1.06355 1.25635 1.57849 1.25727 0.96755 1.01233 1.02083 0.85067 0.77148 0.78272 0.78313 1.19802 1.21586 1.20532 1.19447 0.91046 0.83740 1.43861 0.90147 1.44795 1.02563 1.01008 1.87266 1.20968 0.83682 0.91482 0.98287 1.23355 0.95876 0.95738 1.03235 1.22393 0.98104 0.96594 0.75244 1.92772 1.97524 1.97597 1.32075 1.22540 0.87344 0.90477 0.99593 1.86515 1.39099 1.35372 1.78734 1.22165 0.94855 0.84912 0.98537 0.94149 0.97439 0.95938 0.86880 0.88914 0.90140 0.89010 0.74699 0.94636 0.92726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.95 10.31 21.65 0.22 -58.73 15 2 C -0.07 -3.84 5.49 84.86 0.47 -3.38 15 3 Si 0.98 47.14 29.55 68.60 2.03 49.17 15 4 H -0.27 -12.40 7.11 99.48 0.71 -11.69 15 5 H -0.29 -13.77 7.11 99.48 0.71 -13.06 15 6 H -0.28 -13.02 7.11 99.48 0.71 -12.32 15 7 C -0.25 -14.98 10.28 84.03 0.86 -14.12 15 8 H 0.08 4.58 7.83 -2.91 -0.02 4.55 15 9 N -0.63 -34.57 3.39 -691.95 -2.35 -36.91 15 10 C 0.18 9.28 5.37 86.73 0.47 9.74 15 11 C -0.14 -5.21 6.23 31.79 0.20 -5.01 15 12 C 0.10 3.56 1.37 -9.40 -0.01 3.55 15 13 F -0.22 -9.67 16.98 44.97 0.76 -8.91 15 14 C 0.08 1.96 6.30 71.98 0.45 2.41 15 15 O -0.59 -15.13 13.44 -148.98 -2.00 -17.13 15 16 C 0.12 5.37 6.34 86.86 0.55 5.92 15 17 H 0.25 14.92 8.31 -92.71 -0.77 14.15 15 18 H 0.01 0.43 7.38 -2.39 -0.02 0.41 15 19 H 0.02 1.25 7.51 -2.39 -0.02 1.23 15 20 H 0.11 3.26 8.04 -2.39 -0.02 3.24 15 21 H 0.09 3.03 8.14 -2.39 -0.02 3.01 15 22 H 0.08 1.59 8.14 -2.39 -0.02 1.57 15 23 H 0.09 1.78 8.13 -2.38 -0.02 1.76 15 24 H 0.40 5.26 9.12 -74.06 -0.68 4.59 15 25 H 0.04 1.67 8.14 -2.39 -0.02 1.65 15 26 H 0.06 2.20 8.03 -2.39 -0.02 2.18 15 Total: -1.00 -74.27 225.14 2.15 -72.12 By element: Atomic # 1 Polarization: 0.77 SS G_CDS: 0.50 Total: 1.27 kcal Atomic # 6 Polarization: -3.86 SS G_CDS: 2.98 Total: -0.88 kcal Atomic # 7 Polarization: -93.51 SS G_CDS: -2.13 Total: -95.64 kcal Atomic # 8 Polarization: -15.13 SS G_CDS: -2.00 Total: -17.13 kcal Atomic # 9 Polarization: -9.67 SS G_CDS: 0.76 Total: -8.91 kcal Atomic # 14 Polarization: 47.14 SS G_CDS: 2.03 Total: 49.17 kcal Total: -74.27 2.15 -72.12 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307609749.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.649 kcal (2) G-P(sol) polarization free energy of solvation -74.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds