Wall clock time and date at job start Sun Mar 29 2020 21:26:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86799 * 119.99952 * 2 1 4 4 H 1.48500 * 109.47342 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47609 * 300.00113 * 3 2 1 6 6 H 1.48504 * 109.47150 * 60.00086 * 3 2 1 7 7 C 1.38807 * 120.00101 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99743 * 205.31362 * 7 2 1 9 9 N 1.36936 * 120.00357 * 25.30635 * 7 2 1 10 10 C 1.46508 * 119.99588 * 12.63397 * 9 7 2 11 11 C 1.50703 * 109.46917 * 269.99730 * 10 9 7 12 12 N 1.34773 * 119.99762 * 180.02562 * 11 10 9 13 13 O 1.21280 * 119.99990 * 0.02562 * 11 10 9 14 14 C 1.46495 * 120.00453 * 192.63379 * 9 7 2 15 15 C 1.53001 * 117.49892 * 14.11880 * 14 9 7 16 16 C 1.53002 * 117.49755 * 305.45977 * 14 9 7 17 17 H 0.97001 * 120.00176 * 355.06028 * 1 2 3 18 18 H 1.08999 * 109.46469 * 150.00123 * 10 9 7 19 19 H 1.08992 * 109.47247 * 30.00103 * 10 9 7 20 20 H 0.96999 * 119.99895 * 0.02562 * 12 11 10 21 21 H 0.96997 * 119.99910 * 179.72620 * 12 11 10 22 22 H 1.09000 * 115.55458 * 159.78968 * 14 9 7 23 23 H 1.09001 * 117.49671 * 359.97438 * 15 14 9 24 24 H 1.08993 * 117.50624 * 145.02362 * 15 14 9 25 25 H 1.09000 * 117.50181 * 214.97966 * 16 14 9 26 26 H 1.08999 * 117.49784 * 359.97299 * 16 14 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0125 -1.2471 0.3994 9 7 1.4242 -2.3309 -0.5079 10 6 0.1926 -2.2265 -1.2946 11 6 -0.9991 -2.3248 -0.3774 12 7 -2.2463 -2.2541 -0.8831 13 8 -0.8358 -2.4675 0.8159 14 6 2.0286 -3.6429 -0.2643 15 6 3.1048 -3.7346 0.8194 16 6 3.4955 -3.8290 -0.6577 17 1 -0.4850 0.8369 0.0723 18 1 0.1577 -3.0359 -2.0238 19 1 0.1734 -1.2684 -1.8139 20 1 -2.3769 -2.1403 -1.8376 21 1 -3.0134 -2.3213 -0.2933 22 1 1.3627 -4.4973 -0.3858 23 1 3.3634 -2.8187 1.3507 24 1 3.1473 -4.6494 1.4105 25 1 3.7946 -4.8058 -1.0377 26 1 4.0105 -2.9754 -1.0982 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307690272.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:26:48 Heat of formation + Delta-G solvation = 18.649017 kcal Electronic energy + Delta-G solvation = -11622.673212 eV Core-core repulsion = 9510.411112 eV Total energy + Delta-G solvation = -2112.262100 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 184.095 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.02239 -36.52107 -33.28926 -32.18341 -30.39666 -26.48125 -23.74428 -21.38402 -20.01243 -19.34164 -16.76887 -15.69948 -15.63694 -15.08567 -14.27219 -13.85776 -13.02681 -12.69849 -12.16936 -11.75246 -11.18517 -10.77923 -10.65583 -10.44880 -10.26808 -9.93353 -9.76051 -9.33880 -8.51874 -8.33483 -8.26432 -6.75020 -5.81306 -3.07731 3.37623 3.46151 3.49211 4.37354 4.47005 4.87712 4.95466 5.28265 5.45485 5.90144 6.09178 6.20571 6.35655 6.48776 6.58152 6.72807 6.95092 7.09226 7.13372 7.82966 8.00268 8.28103 8.67867 9.16039 9.78071 9.96103 10.27024 11.28093 Molecular weight = 184.10amu Principal moments of inertia in cm(-1) A = 0.027578 B = 0.023485 C = 0.014186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.060284 B = 1191.951032 C = 1973.276650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.000 4.000 3 Si 0.905 3.095 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.293 1.293 7 C -0.252 4.252 8 H 0.081 0.919 9 N -0.540 5.540 10 C 0.164 3.836 11 C 0.528 3.472 12 N -0.881 5.881 13 O -0.533 6.533 14 C 0.132 3.868 15 C -0.202 4.202 16 C -0.224 4.224 17 H 0.254 0.746 18 H 0.041 0.959 19 H 0.096 0.904 20 H 0.384 0.616 21 H 0.378 0.622 22 H 0.089 0.911 23 H 0.096 0.904 24 H 0.075 0.925 25 H 0.075 0.925 26 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.604 -4.467 -4.924 6.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.198 4.198 3 Si 0.736 3.264 4 H -0.203 1.203 5 H -0.216 1.216 6 H -0.220 1.220 7 C -0.381 4.381 8 H 0.099 0.901 9 N -0.255 5.255 10 C 0.034 3.966 11 C 0.312 3.688 12 N -0.445 5.445 13 O -0.406 6.406 14 C 0.022 3.978 15 C -0.241 4.241 16 C -0.265 4.265 17 H 0.064 0.936 18 H 0.059 0.941 19 H 0.114 0.886 20 H 0.209 0.791 21 H 0.206 0.794 22 H 0.107 0.893 23 H 0.115 0.885 24 H 0.094 0.906 25 H 0.093 0.907 26 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -0.370 -4.366 -4.217 6.082 hybrid contribution -0.108 1.105 0.043 1.111 sum -0.479 -3.261 -4.175 5.319 Atomic orbital electron populations 1.69829 1.05038 1.25277 1.53763 1.24793 0.95234 0.98247 1.01548 0.86154 0.79398 0.83735 0.77149 1.20336 1.21598 1.22005 1.19217 0.97444 0.84918 1.36478 0.90111 1.43506 1.23642 1.00829 1.57559 1.20573 0.84082 1.00597 0.91357 1.21753 0.84002 0.72515 0.90482 1.44094 1.08425 1.81119 1.10885 1.90540 1.85336 1.48209 1.16563 1.20888 0.87779 0.89036 1.00099 1.23127 1.07454 1.01933 0.91545 1.23427 1.03953 1.00942 0.98177 0.93586 0.94080 0.88629 0.79080 0.79411 0.89289 0.88537 0.90647 0.90700 0.89342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.63 8.85 55.49 0.49 -25.14 15 2 C 0.00 -0.01 4.83 -17.43 -0.08 -0.09 15 3 Si 0.91 22.00 29.63 -169.99 -5.04 16.96 15 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 15 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 15 6 H -0.29 -7.29 7.11 56.52 0.40 -6.89 15 7 C -0.25 -6.97 8.89 -15.06 -0.13 -7.11 15 8 H 0.08 2.22 6.28 -52.48 -0.33 1.89 15 9 N -0.54 -13.75 2.38 -167.02 -0.40 -14.15 15 10 C 0.16 3.82 5.48 -5.19 -0.03 3.79 15 11 C 0.53 12.67 6.06 -10.99 -0.07 12.60 15 12 N -0.88 -16.13 8.87 31.22 0.28 -15.85 15 13 O -0.53 -15.52 16.69 5.56 0.09 -15.42 15 14 C 0.13 2.93 6.60 -67.93 -0.45 2.48 15 15 C -0.20 -4.19 9.77 -26.69 -0.26 -4.45 15 16 C -0.22 -4.33 10.14 -26.69 -0.27 -4.60 15 17 H 0.25 7.15 8.32 -40.82 -0.34 6.81 15 18 H 0.04 0.81 8.07 -51.93 -0.42 0.39 15 19 H 0.10 2.34 6.61 -51.93 -0.34 2.00 15 20 H 0.38 5.63 8.83 -40.82 -0.36 5.27 15 21 H 0.38 6.47 8.93 -40.82 -0.36 6.10 15 22 H 0.09 1.84 8.14 -51.93 -0.42 1.42 15 23 H 0.10 2.20 6.44 -51.93 -0.33 1.86 15 24 H 0.08 1.39 8.14 -51.93 -0.42 0.96 15 25 H 0.07 1.24 8.14 -51.93 -0.42 0.81 15 26 H 0.09 1.80 8.14 -51.93 -0.42 1.38 15 LS Contribution 225.55 15.07 3.40 3.40 Total: -1.00 -32.91 225.55 -5.44 -38.36 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: -2.98 Total: 9.22 kcal Atomic # 6 Polarization: 3.92 SS G_CDS: -1.29 Total: 2.63 kcal Atomic # 7 Polarization: -55.51 SS G_CDS: 0.37 Total: -55.14 kcal Atomic # 8 Polarization: -15.52 SS G_CDS: 0.09 Total: -15.42 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.04 Total: 16.96 kcal Total LS contribution 3.40 Total: 3.40 kcal Total: -32.91 -5.44 -38.36 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307690272.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.005 kcal (2) G-P(sol) polarization free energy of solvation -32.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.356 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds