Wall clock time and date at job start Sun Mar 29 2020 21:38:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53007 * 109.47252 * 2 1 4 4 H 1.09001 * 109.46784 * 305.33406 * 3 2 1 5 5 C 1.50693 * 109.47176 * 185.33067 * 3 2 1 6 6 H 1.07996 * 120.00249 * 265.17236 * 5 3 2 7 7 C 1.37881 * 120.00076 * 85.17631 * 5 3 2 8 8 N 1.31517 * 119.99755 * 357.30007 * 7 5 3 9 9 Si 1.86793 * 120.00072 * 177.30588 * 7 5 3 10 10 H 1.48500 * 109.47288 * 179.97438 * 9 7 5 11 11 H 1.48503 * 109.47183 * 299.99589 * 9 7 5 12 12 H 1.48499 * 109.47416 * 60.00052 * 9 7 5 13 13 N 1.46906 * 109.46596 * 65.33014 * 3 2 1 14 14 C 1.48131 * 110.99410 * 185.16323 * 13 3 2 15 15 C 1.55106 * 103.10740 * 215.74268 * 14 13 3 16 16 C 1.54958 * 101.27133 * 35.05728 * 15 14 13 17 17 O 1.43883 * 104.25219 * 324.01674 * 16 15 14 18 18 H 1.08999 * 109.47177 * 180.02562 * 1 2 3 19 19 H 1.09006 * 109.47209 * 299.99774 * 1 2 3 20 20 H 1.08999 * 109.47331 * 59.99976 * 1 2 3 21 21 H 1.09006 * 109.47209 * 240.00226 * 2 1 3 22 22 H 1.08999 * 109.47331 * 120.00024 * 2 1 3 23 23 H 0.97002 * 120.00134 * 354.79092 * 8 7 5 24 24 H 1.09005 * 110.69124 * 334.14133 * 14 13 3 25 25 H 1.08990 * 110.69185 * 97.33697 * 14 13 3 26 26 H 1.08997 * 111.06181 * 277.05343 * 15 14 13 27 27 H 1.09005 * 111.09521 * 153.06920 * 15 14 13 28 28 H 1.09007 * 110.47487 * 205.33114 * 16 15 14 29 29 H 1.08998 * 110.48019 * 82.71435 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6007 1.9832 -0.8384 5 6 3.5411 1.4446 -0.1320 6 1 4.1608 1.4951 0.7510 7 6 4.1236 1.3820 -1.3802 8 7 3.3704 1.2670 -2.4522 9 14 5.9822 1.4604 -1.5486 10 1 6.3534 1.3732 -2.9838 11 1 6.4766 2.7427 -0.9860 12 1 6.5945 0.3270 -0.8098 13 7 1.6581 2.0968 1.2587 14 6 2.0271 3.5314 1.2443 15 6 2.4445 3.8019 2.7135 16 6 3.1094 2.4546 3.0924 17 8 2.3246 1.4657 2.4022 18 1 -0.3633 -1.0276 0.0005 19 1 -0.3634 0.5138 0.8900 20 1 -0.3634 0.5138 -0.8900 21 1 1.8933 -0.5138 -0.8900 22 1 1.8933 -0.5138 0.8900 23 1 2.4117 1.1502 -2.3612 24 1 2.8635 3.7072 0.5678 25 1 1.1709 4.1465 0.9678 26 1 1.5733 3.9984 3.3383 27 1 3.1597 4.6223 2.7734 28 1 3.0615 2.2954 4.1698 29 1 4.1433 2.4293 2.7480 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307712619.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:40 Heat of formation + Delta-G solvation = -11.046751 kcal Electronic energy + Delta-G solvation = -12080.934600 eV Core-core repulsion = 10005.499227 eV Total energy + Delta-G solvation = -2075.435373 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.13009 -34.76620 -31.75192 -31.33823 -29.67148 -26.06336 -23.45500 -22.36583 -21.04289 -19.61110 -17.12869 -16.01719 -14.98546 -14.13719 -13.78481 -13.59453 -13.21735 -12.82344 -12.29523 -11.71904 -11.45743 -11.16008 -11.04928 -10.93650 -10.73789 -10.44217 -10.15986 -9.80969 -9.74692 -9.62223 -8.75228 -8.43665 -7.45105 -6.40978 -4.16167 3.37717 3.40518 3.58675 4.00262 4.47745 5.05288 5.27895 5.31173 5.37676 5.75995 6.11083 6.13629 6.20492 6.23690 6.27054 6.33927 6.43525 6.63020 6.83579 6.89962 7.11196 7.26183 7.46919 7.63473 7.93655 8.19691 8.42852 8.76515 9.56282 10.94803 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.033078 B = 0.018260 C = 0.013617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.280701 B = 1533.077934 C = 2055.713256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.101 4.101 3 C 0.164 3.836 4 H 0.054 0.946 5 C -0.611 4.611 6 H 0.054 0.946 7 C 0.024 3.976 8 N -0.907 5.907 9 Si 1.064 2.936 10 H -0.281 1.281 11 H -0.289 1.289 12 H -0.288 1.288 13 N -0.319 5.319 14 C 0.002 3.998 15 C -0.146 4.146 16 C 0.034 3.966 17 O -0.243 6.243 18 H 0.032 0.968 19 H 0.055 0.945 20 H 0.039 0.961 21 H 0.053 0.947 22 H 0.052 0.948 23 H 0.271 0.729 24 H 0.076 0.924 25 H 0.084 0.916 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.433 3.432 6.654 7.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.139 4.139 3 C 0.056 3.944 4 H 0.071 0.929 5 C -0.650 4.650 6 H 0.072 0.928 7 C -0.182 4.182 8 N -0.543 5.543 9 Si 0.892 3.108 10 H -0.207 1.207 11 H -0.216 1.216 12 H -0.214 1.214 13 N -0.087 5.087 14 C -0.127 4.127 15 C -0.185 4.185 16 C -0.045 4.045 17 O -0.247 6.247 18 H 0.051 0.949 19 H 0.074 0.926 20 H 0.058 0.942 21 H 0.072 0.928 22 H 0.071 0.929 23 H 0.082 0.918 24 H 0.094 0.906 25 H 0.102 0.898 26 H 0.091 0.909 27 H 0.092 0.908 28 H 0.093 0.907 29 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.769 3.163 5.654 6.524 hybrid contribution -0.189 0.245 0.909 0.960 sum -0.958 3.408 6.563 7.457 Atomic orbital electron populations 1.21776 0.98150 0.99253 1.00980 1.21510 0.92949 0.98711 1.00746 1.20104 0.95806 0.92202 0.86268 0.92894 1.22335 0.91411 1.55941 0.95338 0.92778 1.25789 1.06784 0.93440 0.92143 1.70801 1.07595 1.45225 1.30702 0.83612 0.74525 0.76514 0.76129 1.20675 1.21574 1.21398 1.70768 1.39331 0.99754 0.98823 1.23681 1.01449 0.91151 0.96417 1.23324 1.00471 0.98112 0.96593 1.23387 0.95590 0.88852 0.96718 1.91537 1.65243 1.30379 1.37517 0.94873 0.92555 0.94205 0.92815 0.92947 0.91770 0.90611 0.89758 0.90871 0.90823 0.90724 0.92895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.94 9.80 37.15 0.36 -2.58 15 2 C -0.10 -2.42 5.31 -26.73 -0.14 -2.57 15 3 C 0.16 4.16 1.40 -68.86 -0.10 4.06 15 4 H 0.05 1.44 6.96 -51.93 -0.36 1.08 15 5 C -0.61 -16.87 6.84 -34.44 -0.24 -17.11 15 6 H 0.05 1.53 6.36 -52.49 -0.33 1.20 15 7 C 0.02 0.67 5.46 -17.82 -0.10 0.57 15 8 N -0.91 -26.75 13.59 55.43 0.75 -26.00 15 9 Si 1.06 25.03 29.90 -169.99 -5.08 19.94 15 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 15 11 H -0.29 -6.49 7.11 56.52 0.40 -6.09 15 12 H -0.29 -6.58 7.11 56.52 0.40 -6.18 15 13 N -0.32 -7.31 5.25 -105.81 -0.55 -7.86 15 14 C 0.00 0.04 6.66 -2.03 -0.01 0.02 15 15 C -0.15 -2.40 7.20 -24.58 -0.18 -2.58 15 16 C 0.03 0.62 7.55 38.19 0.29 0.91 15 17 O -0.24 -5.61 10.43 -14.11 -0.15 -5.76 15 18 H 0.03 0.60 8.14 -51.93 -0.42 0.17 15 19 H 0.06 1.14 7.76 -51.93 -0.40 0.73 15 20 H 0.04 0.78 8.14 -51.93 -0.42 0.36 15 21 H 0.05 1.37 7.78 -51.93 -0.40 0.97 15 22 H 0.05 1.30 7.65 -51.93 -0.40 0.91 15 23 H 0.27 7.94 6.37 -40.82 -0.26 7.68 15 24 H 0.08 1.68 6.87 -51.93 -0.36 1.33 15 25 H 0.08 1.50 8.14 -51.93 -0.42 1.07 15 26 H 0.07 1.08 8.14 -51.93 -0.42 0.66 15 27 H 0.07 1.04 8.14 -51.93 -0.42 0.62 15 28 H 0.07 1.17 8.14 -51.92 -0.42 0.74 15 29 H 0.05 1.03 7.55 -51.93 -0.39 0.64 15 LS Contribution 236.86 15.07 3.57 3.57 Total: -1.00 -29.90 236.86 -5.81 -35.71 By element: Atomic # 1 Polarization: 3.89 SS G_CDS: -4.24 Total: -0.35 kcal Atomic # 6 Polarization: -19.15 SS G_CDS: -0.11 Total: -19.26 kcal Atomic # 7 Polarization: -34.05 SS G_CDS: 0.20 Total: -33.86 kcal Atomic # 8 Polarization: -5.61 SS G_CDS: -0.15 Total: -5.76 kcal Atomic # 14 Polarization: 25.03 SS G_CDS: -5.08 Total: 19.94 kcal Total LS contribution 3.57 Total: 3.57 kcal Total: -29.90 -5.81 -35.71 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307712619.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.665 kcal (2) G-P(sol) polarization free energy of solvation -29.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds