Wall clock time and date at job start Sun Mar 29 2020 21:38:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53007 * 109.47252 * 2 1 4 4 H 1.09001 * 109.46784 * 305.33406 * 3 2 1 5 5 C 1.50693 * 109.47176 * 185.33067 * 3 2 1 6 6 H 1.07996 * 120.00249 * 265.17236 * 5 3 2 7 7 C 1.37881 * 120.00076 * 85.17631 * 5 3 2 8 8 N 1.31517 * 119.99755 * 357.30007 * 7 5 3 9 9 Si 1.86793 * 120.00072 * 177.30588 * 7 5 3 10 10 H 1.48500 * 109.47288 * 179.97438 * 9 7 5 11 11 H 1.48503 * 109.47183 * 299.99589 * 9 7 5 12 12 H 1.48499 * 109.47416 * 60.00052 * 9 7 5 13 13 N 1.46906 * 109.46596 * 65.33014 * 3 2 1 14 14 C 1.48131 * 110.99410 * 185.16323 * 13 3 2 15 15 C 1.55106 * 103.10740 * 215.74268 * 14 13 3 16 16 C 1.54958 * 101.27133 * 35.05728 * 15 14 13 17 17 O 1.43883 * 104.25219 * 324.01674 * 16 15 14 18 18 H 1.08999 * 109.47177 * 180.02562 * 1 2 3 19 19 H 1.09006 * 109.47209 * 299.99774 * 1 2 3 20 20 H 1.08999 * 109.47331 * 59.99976 * 1 2 3 21 21 H 1.09006 * 109.47209 * 240.00226 * 2 1 3 22 22 H 1.08999 * 109.47331 * 120.00024 * 2 1 3 23 23 H 0.97002 * 120.00134 * 354.79092 * 8 7 5 24 24 H 1.09005 * 110.69124 * 334.14133 * 14 13 3 25 25 H 1.08990 * 110.69185 * 97.33697 * 14 13 3 26 26 H 1.08997 * 111.06181 * 277.05343 * 15 14 13 27 27 H 1.09005 * 111.09521 * 153.06920 * 15 14 13 28 28 H 1.09007 * 110.47487 * 205.33114 * 16 15 14 29 29 H 1.08998 * 110.48019 * 82.71435 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6007 1.9832 -0.8384 5 6 3.5411 1.4446 -0.1320 6 1 4.1608 1.4951 0.7510 7 6 4.1236 1.3820 -1.3802 8 7 3.3704 1.2670 -2.4522 9 14 5.9822 1.4604 -1.5486 10 1 6.3534 1.3732 -2.9838 11 1 6.4766 2.7427 -0.9860 12 1 6.5945 0.3270 -0.8098 13 7 1.6581 2.0968 1.2587 14 6 2.0271 3.5314 1.2443 15 6 2.4445 3.8019 2.7135 16 6 3.1094 2.4546 3.0924 17 8 2.3246 1.4657 2.4022 18 1 -0.3633 -1.0276 0.0005 19 1 -0.3634 0.5138 0.8900 20 1 -0.3634 0.5138 -0.8900 21 1 1.8933 -0.5138 -0.8900 22 1 1.8933 -0.5138 0.8900 23 1 2.4117 1.1502 -2.3612 24 1 2.8635 3.7072 0.5678 25 1 1.1709 4.1465 0.9678 26 1 1.5733 3.9984 3.3383 27 1 3.1597 4.6223 2.7734 28 1 3.0615 2.2954 4.1698 29 1 4.1433 2.4293 2.7480 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307712619.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:40 Heat of formation + Delta-G solvation = -30.744349 kcal Electronic energy + Delta-G solvation = -12081.788752 eV Core-core repulsion = 10005.499227 eV Total energy + Delta-G solvation = -2076.289525 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.82556 -36.67678 -33.79082 -32.97932 -31.31248 -27.99307 -25.38955 -24.05422 -22.60076 -21.51189 -19.16622 -17.71021 -16.65788 -15.87560 -15.72166 -15.33898 -14.98907 -14.53369 -14.11796 -13.39427 -13.18469 -12.86856 -12.72924 -12.57886 -12.44901 -12.23203 -12.00462 -11.66016 -11.64034 -11.26305 -10.69467 -10.55715 -9.31978 -8.62031 -6.38687 1.47218 1.53877 1.73685 2.30451 2.52697 3.14273 3.49858 3.81596 4.01060 4.30425 4.40295 4.46676 4.62679 4.68997 4.75685 4.79258 4.85928 4.94215 5.11313 5.18437 5.30087 5.38178 5.55314 5.70020 5.98169 6.26609 6.31286 6.54522 7.40444 8.72521 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.033078 B = 0.018260 C = 0.013617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.280701 B = 1533.077934 C = 2055.713256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.095 4.095 3 C 0.166 3.834 4 H 0.031 0.969 5 C -0.614 4.614 6 H 0.042 0.958 7 C -0.023 4.023 8 N -0.931 5.931 9 Si 1.107 2.893 10 H -0.282 1.282 11 H -0.271 1.271 12 H -0.278 1.278 13 N -0.322 5.322 14 C -0.007 4.007 15 C -0.129 4.129 16 C 0.022 3.978 17 O -0.269 6.269 18 H 0.056 0.944 19 H 0.059 0.941 20 H 0.042 0.958 21 H 0.029 0.971 22 H 0.039 0.961 23 H 0.261 0.739 24 H 0.046 0.954 25 H 0.106 0.894 26 H 0.098 0.902 27 H 0.101 0.899 28 H 0.110 0.890 29 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.377 4.202 7.999 9.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.134 4.134 3 C 0.057 3.943 4 H 0.049 0.951 5 C -0.653 4.653 6 H 0.061 0.939 7 C -0.223 4.223 8 N -0.568 5.568 9 Si 0.929 3.071 10 H -0.207 1.207 11 H -0.196 1.196 12 H -0.203 1.203 13 N -0.089 5.089 14 C -0.135 4.135 15 C -0.168 4.168 16 C -0.056 4.056 17 O -0.274 6.274 18 H 0.075 0.925 19 H 0.078 0.922 20 H 0.061 0.939 21 H 0.048 0.952 22 H 0.057 0.943 23 H 0.071 0.929 24 H 0.064 0.936 25 H 0.124 0.876 26 H 0.117 0.883 27 H 0.119 0.881 28 H 0.128 0.872 29 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -0.726 3.943 7.022 8.086 hybrid contribution -0.225 0.031 0.572 0.615 sum -0.951 3.973 7.594 8.623 Atomic orbital electron populations 1.21641 0.95057 1.00956 1.01270 1.21370 0.95702 0.97512 0.98793 1.19942 0.94459 0.92782 0.87071 0.95100 1.22528 0.92777 1.55152 0.94845 0.93941 1.27076 1.10387 0.92794 0.92031 1.70907 1.07216 1.47316 1.31353 0.83051 0.70153 0.77620 0.76234 1.20699 1.19645 1.20324 1.70684 1.39462 1.00999 0.97720 1.23822 1.01372 0.89803 0.98535 1.23314 1.01841 0.97676 0.93929 1.23681 0.94424 0.89299 0.98189 1.91495 1.65920 1.32465 1.37545 0.92485 0.92176 0.93881 0.95202 0.94261 0.92903 0.93570 0.87564 0.88346 0.88091 0.87212 0.94424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.26 9.80 71.98 0.71 -4.55 15 2 C -0.10 -4.64 5.31 30.59 0.16 -4.48 15 3 C 0.17 8.54 1.40 44.17 0.06 8.60 15 4 H 0.03 1.74 6.96 -2.39 -0.02 1.72 15 5 C -0.61 -34.39 6.84 25.60 0.18 -34.22 15 6 H 0.04 2.43 6.36 -2.91 -0.02 2.41 15 7 C -0.02 -1.31 5.46 84.66 0.46 -0.85 15 8 N -0.93 -55.93 13.59 21.45 0.29 -55.64 15 9 Si 1.11 50.37 29.90 68.60 2.05 52.42 15 10 H -0.28 -12.77 7.11 99.48 0.71 -12.06 15 11 H -0.27 -11.45 7.11 99.48 0.71 -10.75 15 12 H -0.28 -12.09 7.11 99.48 0.71 -11.38 15 13 N -0.32 -14.53 5.25 -488.67 -2.56 -17.09 15 14 C -0.01 -0.25 6.66 86.79 0.58 0.32 15 15 C -0.13 -3.83 7.20 31.99 0.23 -3.60 15 16 C 0.02 0.78 7.55 72.65 0.55 1.33 15 17 O -0.27 -12.19 10.43 -51.04 -0.53 -12.72 15 18 H 0.06 1.98 8.14 -2.39 -0.02 1.96 15 19 H 0.06 2.34 7.76 -2.38 -0.02 2.32 15 20 H 0.04 1.66 8.14 -2.39 -0.02 1.64 15 21 H 0.03 1.55 7.78 -2.38 -0.02 1.53 15 22 H 0.04 1.97 7.65 -2.39 -0.02 1.95 15 23 H 0.26 15.75 6.37 -92.71 -0.59 15.16 15 24 H 0.05 2.04 6.87 -2.38 -0.02 2.03 15 25 H 0.11 3.57 8.14 -2.39 -0.02 3.55 15 26 H 0.10 2.47 8.14 -2.39 -0.02 2.45 15 27 H 0.10 2.46 8.14 -2.38 -0.02 2.44 15 28 H 0.11 3.05 8.14 -2.38 -0.02 3.04 15 29 H 0.04 1.41 7.55 -2.39 -0.02 1.40 15 Total: -1.00 -64.49 236.86 3.46 -61.03 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: 1.29 Total: 9.43 kcal Atomic # 6 Polarization: -40.37 SS G_CDS: 2.92 Total: -37.45 kcal Atomic # 7 Polarization: -70.45 SS G_CDS: -2.27 Total: -72.72 kcal Atomic # 8 Polarization: -12.19 SS G_CDS: -0.53 Total: -12.72 kcal Atomic # 14 Polarization: 50.37 SS G_CDS: 2.05 Total: 52.42 kcal Total: -64.49 3.46 -61.03 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307712619.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.289 kcal (2) G-P(sol) polarization free energy of solvation -64.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds