Wall clock time and date at job start Sun Mar 29 2020 21:25:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31437 * 1 3 3 Si 1.86804 * 119.99827 * 2 1 4 4 H 1.48492 * 109.47331 * 269.99869 * 3 2 1 5 5 H 1.48501 * 109.47033 * 30.00555 * 3 2 1 6 6 H 1.48508 * 109.46831 * 149.99717 * 3 2 1 7 7 C 1.38760 * 120.00479 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00396 * 179.97438 * 7 2 1 9 9 O 1.34922 * 119.99406 * 0.02562 * 7 2 1 10 10 C 1.34315 * 116.99623 * 180.02562 * 9 7 2 11 11 O 1.21204 * 120.00214 * 359.97438 * 10 9 7 12 12 C 1.50703 * 119.99629 * 179.97438 * 10 9 7 13 13 C 1.53003 * 109.46728 * 179.97438 * 12 10 9 14 14 C 1.53786 * 113.61503 * 85.86370 * 13 12 10 15 15 C 1.54049 * 86.98426 * 140.01654 * 14 13 12 16 16 C 1.53781 * 113.61337 * 183.47164 * 13 12 10 17 17 H 0.96993 * 120.00433 * 359.97438 * 1 2 3 18 18 H 1.09000 * 109.47223 * 60.00078 * 12 10 9 19 19 H 1.08997 * 109.47305 * 299.99738 * 12 10 9 20 20 H 1.09002 * 112.85017 * 314.66753 * 13 12 10 21 21 H 1.08992 * 113.61675 * 254.61398 * 14 13 12 22 22 H 1.09000 * 113.60973 * 25.51686 * 14 13 12 23 23 H 1.09005 * 113.62125 * 220.02158 * 15 14 13 24 24 H 1.09003 * 113.61268 * 89.11946 * 15 14 13 25 25 H 1.08999 * 113.61567 * 334.48261 * 16 13 12 26 26 H 1.09000 * 113.61379 * 105.30384 * 16 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2483 1.6178 0.0000 4 1 2.4959 2.0465 -1.4000 5 1 1.4458 2.6527 0.7002 6 1 3.5459 1.4402 0.7001 7 6 2.0083 -1.2016 -0.0005 8 1 3.0882 -1.2016 -0.0010 9 8 1.3336 -2.3701 -0.0016 10 6 2.0652 -3.4965 -0.0015 11 8 3.2756 -3.4331 -0.0010 12 6 1.3810 -4.8393 -0.0021 13 6 2.4348 -5.9485 -0.0025 14 6 2.9328 -6.3257 1.4027 15 6 2.9110 -7.7912 0.9284 16 6 1.8394 -7.3638 -0.0884 17 1 -0.4850 0.8399 0.0004 18 1 0.7586 -4.9295 -0.8923 19 1 0.7579 -4.9299 0.8876 20 1 3.2383 -5.7688 -0.7168 21 1 3.9321 -5.9526 1.6266 22 1 2.2131 -6.1118 2.1929 23 1 2.5446 -8.4887 1.6817 24 1 3.8447 -8.1153 0.4686 25 1 0.8214 -7.4332 0.2949 26 1 1.9554 -7.8276 -1.0680 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307758302.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:25:38 Heat of formation + Delta-G solvation = -74.908938 kcal Electronic energy + Delta-G solvation = -10979.253741 eV Core-core repulsion = 8830.641912 eV Total energy + Delta-G solvation = -2148.611829 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 184.089 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.28132 -38.03925 -34.99518 -32.08063 -30.09871 -25.46807 -25.32784 -23.29853 -19.92179 -19.02041 -17.63822 -16.39898 -15.43560 -14.75912 -14.48115 -14.27557 -14.01843 -12.71687 -12.42396 -12.22955 -11.66930 -11.40323 -11.25732 -11.01579 -10.43698 -10.37281 -10.28582 -10.03066 -9.91563 -9.71630 -8.89043 -8.51907 -6.34978 -4.02643 3.15561 3.21975 3.28316 3.64176 4.00628 4.58117 4.86811 4.93160 5.04123 5.16725 5.24287 5.68985 5.82752 5.91244 5.93612 5.99865 6.10275 6.25121 6.35247 6.50640 6.79745 6.93649 7.46124 8.02775 8.81088 9.14283 9.95495 10.83546 Molecular weight = 184.09amu Principal moments of inertia in cm(-1) A = 0.102110 B = 0.008620 C = 0.008214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 274.148373 B = 3247.360346 C = 3407.862431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.040 3.960 3 Si 0.942 3.058 4 H -0.274 1.274 5 H -0.279 1.279 6 H -0.267 1.267 7 C -0.381 4.381 8 H 0.094 0.906 9 O -0.220 6.220 10 C 0.399 3.601 11 O -0.557 6.557 12 C -0.096 4.096 13 C -0.093 4.093 14 C -0.134 4.134 15 C -0.143 4.143 16 C -0.138 4.138 17 H 0.268 0.732 18 H 0.090 0.910 19 H 0.089 0.911 20 H 0.097 0.903 21 H 0.068 0.932 22 H 0.078 0.922 23 H 0.063 0.937 24 H 0.076 0.924 25 H 0.080 0.920 26 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.738 -10.087 0.821 10.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.163 4.163 3 Si 0.767 3.233 4 H -0.200 1.200 5 H -0.204 1.204 6 H -0.192 1.192 7 C -0.458 4.458 8 H 0.112 0.888 9 O -0.127 6.127 10 C 0.245 3.755 11 O -0.454 6.454 12 C -0.134 4.134 13 C -0.111 4.111 14 C -0.171 4.171 15 C -0.180 4.180 16 C -0.175 4.175 17 H 0.078 0.922 18 H 0.108 0.892 19 H 0.108 0.892 20 H 0.115 0.885 21 H 0.087 0.913 22 H 0.096 0.904 23 H 0.082 0.918 24 H 0.095 0.905 25 H 0.099 0.901 26 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 1.860 -9.895 0.827 10.102 hybrid contribution 0.358 0.868 -0.015 0.939 sum 2.218 -9.027 0.812 9.331 Atomic orbital electron populations 1.69989 1.05983 1.27523 1.47104 1.25318 0.95786 0.98815 0.96379 0.85698 0.79041 0.79922 0.78665 1.19955 1.20381 1.19158 1.21206 0.92317 0.80069 1.52182 0.88831 1.83892 1.39483 1.13477 1.75873 1.23290 0.86790 0.87323 0.78093 1.90528 1.15857 1.88172 1.50833 1.21138 0.98338 0.89735 1.04140 1.22332 0.97902 0.92273 0.98640 1.22975 1.02023 0.95234 0.96898 1.22845 0.99220 0.96966 0.98962 1.22979 0.98762 0.96440 0.99364 0.92192 0.89173 0.89249 0.88458 0.91322 0.90373 0.91843 0.90486 0.90121 0.91685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.07 13.67 55.48 0.76 -25.31 15 2 C 0.04 1.17 5.49 -17.53 -0.10 1.07 15 3 Si 0.94 21.80 29.55 -169.99 -5.02 16.78 15 4 H -0.27 -6.15 7.11 56.52 0.40 -5.75 15 5 H -0.28 -6.19 7.11 56.52 0.40 -5.78 15 6 H -0.27 -6.08 7.11 56.52 0.40 -5.68 15 7 C -0.38 -11.62 9.65 30.93 0.30 -11.33 15 8 H 0.09 2.87 6.86 -52.49 -0.36 2.51 15 9 O -0.22 -6.50 9.75 -20.72 -0.20 -6.71 15 10 C 0.40 10.09 7.91 36.01 0.28 10.38 15 11 O -0.56 -15.24 15.02 -19.05 -0.29 -15.52 15 12 C -0.10 -1.77 5.64 -27.88 -0.16 -1.93 15 13 C -0.09 -1.49 3.11 -89.80 -0.28 -1.77 15 14 C -0.13 -1.99 7.65 -25.77 -0.20 -2.19 15 15 C -0.14 -1.70 8.09 -25.78 -0.21 -1.91 15 16 C -0.14 -1.70 7.64 -25.92 -0.20 -1.90 15 17 H 0.27 7.36 8.31 -40.82 -0.34 7.02 15 18 H 0.09 1.53 8.14 -51.93 -0.42 1.10 15 19 H 0.09 1.52 7.88 -51.93 -0.41 1.11 15 20 H 0.10 1.71 7.73 -51.93 -0.40 1.30 15 21 H 0.07 1.09 8.14 -51.93 -0.42 0.67 15 22 H 0.08 1.12 7.92 -51.93 -0.41 0.71 15 23 H 0.06 0.66 8.14 -51.93 -0.42 0.24 15 24 H 0.08 0.86 8.14 -51.93 -0.42 0.44 15 25 H 0.08 0.92 8.10 -51.93 -0.42 0.50 15 26 H 0.06 0.73 8.14 -51.93 -0.42 0.31 15 LS Contribution 231.99 15.07 3.50 3.50 Total: -1.00 -33.07 231.99 -5.06 -38.13 By element: Atomic # 1 Polarization: 1.96 SS G_CDS: -3.25 Total: -1.29 kcal Atomic # 6 Polarization: -9.02 SS G_CDS: -0.55 Total: -9.57 kcal Atomic # 7 Polarization: -26.07 SS G_CDS: 0.76 Total: -25.31 kcal Atomic # 8 Polarization: -21.74 SS G_CDS: -0.49 Total: -22.23 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 3.50 Total: 3.50 kcal Total: -33.07 -5.06 -38.13 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307758302.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.780 kcal (2) G-P(sol) polarization free energy of solvation -33.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds