Wall clock time and date at job start Sun Mar 29 2020 21:40:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 110.27435 * 2 1 4 4 C 1.54947 * 110.30754 * 122.08602 * 2 1 3 5 5 C 1.55304 * 100.94189 * 155.36106 * 4 2 1 6 6 H 1.08992 * 110.84540 * 84.05954 * 5 4 2 7 7 N 1.46905 * 110.84558 * 207.67834 * 5 4 2 8 8 C 1.46905 * 110.99675 * 205.00031 * 7 5 4 9 9 C 1.50698 * 109.47066 * 180.02562 * 8 7 5 10 10 H 1.08003 * 120.00168 * 359.97438 * 9 8 7 11 11 C 1.37877 * 120.00160 * 180.02562 * 9 8 7 12 12 N 1.31512 * 119.99961 * 180.02562 * 11 9 8 13 13 Si 1.86795 * 119.99836 * 359.97438 * 11 9 8 14 14 H 1.48499 * 109.47234 * 90.00658 * 13 11 9 15 15 H 1.48507 * 109.47516 * 210.00443 * 13 11 9 16 16 H 1.48499 * 109.47536 * 330.00596 * 13 11 9 17 17 C 1.54376 * 102.25478 * 325.86567 * 5 4 2 18 18 O 1.43240 * 107.58688 * 21.35477 * 17 5 4 19 19 H 1.08993 * 109.47571 * 297.91392 * 1 2 3 20 20 H 1.09007 * 109.46607 * 57.91954 * 1 2 3 21 21 H 1.09006 * 109.47298 * 177.90730 * 1 2 3 22 22 H 1.08995 * 111.12977 * 273.28346 * 4 2 1 23 23 H 1.09009 * 111.12280 * 37.44249 * 4 2 1 24 24 H 1.00899 * 111.00273 * 81.04959 * 7 5 4 25 25 H 1.08996 * 109.47184 * 300.00195 * 8 7 5 26 26 H 1.09006 * 109.46995 * 60.00215 * 8 7 5 27 27 H 0.97008 * 119.99717 * 179.97438 * 12 11 9 28 28 H 1.08997 * 109.83361 * 261.84404 * 17 5 4 29 29 H 1.09003 * 109.83212 * 140.86534 * 17 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9077 1.0224 0.0000 4 6 2.0678 -0.7719 1.2312 5 6 3.4699 -1.2018 0.7202 6 1 4.1973 -0.4033 0.8655 7 7 3.9101 -2.4385 1.3798 8 6 5.3757 -2.5388 1.3859 9 6 5.7888 -3.8173 2.0684 10 1 5.0378 -4.4881 2.4590 11 6 7.1256 -4.1303 2.1952 12 7 7.4860 -5.2463 2.7904 13 14 8.4246 -2.9700 1.5204 14 1 8.8091 -1.9929 2.5705 15 1 9.6194 -3.7499 1.1086 16 1 7.8781 -2.2445 0.3456 17 6 3.2113 -1.4428 -0.7825 18 8 2.0286 -0.7180 -1.1399 19 1 -0.3634 0.4810 0.9080 20 1 -0.3633 0.5459 -0.8708 21 1 -0.3634 -1.0270 -0.0375 22 1 2.1495 -0.1184 2.0997 23 1 1.4470 -1.6402 1.4523 24 1 3.4941 -3.2482 0.9446 25 1 5.7441 -2.5396 0.3601 26 1 5.7959 -1.6880 1.9223 27 1 8.4265 -5.4667 2.8793 28 1 3.0625 -2.5068 -0.9663 29 1 4.0576 -1.0803 -1.3662 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000401860126.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:28 Heat of formation + Delta-G solvation = -52.699543 kcal Electronic energy + Delta-G solvation = -11363.487089 eV Core-core repulsion = 9286.245515 eV Total energy + Delta-G solvation = -2077.241573 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.41285 -35.22859 -32.53200 -31.99871 -29.79231 -26.43419 -25.60158 -21.55760 -21.01721 -20.59892 -16.92722 -16.71361 -15.44650 -14.86319 -14.55289 -13.85861 -13.50236 -13.27963 -12.65282 -12.39967 -12.27524 -12.05110 -11.55688 -11.28265 -10.98575 -10.70211 -10.63139 -10.40057 -9.85321 -9.42160 -9.31139 -8.63583 -7.57008 -6.10034 -4.08771 3.25818 3.33242 3.34793 3.91612 4.38022 4.74294 4.84162 5.08143 5.17969 5.22917 5.35669 5.42964 5.48496 5.69540 5.80423 5.92627 6.03281 6.13170 6.20024 6.36000 6.68766 6.94168 7.16669 7.52432 7.80469 8.21017 8.58235 8.97410 9.51240 11.03127 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.081280 B = 0.008550 C = 0.008179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 344.406535 B = 3274.102187 C = 3422.599418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.071 3.929 3 H 0.066 0.934 4 C -0.139 4.139 5 C 0.053 3.947 6 H 0.085 0.915 7 N -0.666 5.666 8 C 0.162 3.838 9 C -0.519 4.519 10 H 0.080 0.920 11 C 0.069 3.931 12 N -0.899 5.899 13 Si 0.878 3.122 14 H -0.275 1.275 15 H -0.285 1.285 16 H -0.268 1.268 17 C 0.023 3.977 18 O -0.385 6.385 19 H 0.068 0.932 20 H 0.058 0.942 21 H 0.062 0.938 22 H 0.081 0.919 23 H 0.082 0.918 24 H 0.340 0.660 25 H -0.014 1.014 26 H 0.023 0.977 27 H 0.264 0.736 28 H 0.070 0.930 29 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.410 10.081 -5.347 14.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.014 3.986 3 H 0.084 0.916 4 C -0.178 4.178 5 C -0.059 4.059 6 H 0.103 0.897 7 N -0.296 5.296 8 C 0.035 3.965 9 C -0.557 4.557 10 H 0.098 0.902 11 C -0.133 4.133 12 N -0.537 5.537 13 Si 0.705 3.295 14 H -0.201 1.201 15 H -0.211 1.211 16 H -0.193 1.193 17 C -0.055 4.055 18 O -0.304 6.304 19 H 0.086 0.914 20 H 0.077 0.923 21 H 0.081 0.919 22 H 0.100 0.900 23 H 0.101 0.899 24 H 0.158 0.842 25 H 0.004 0.996 26 H 0.041 0.959 27 H 0.074 0.926 28 H 0.088 0.912 29 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -9.358 10.225 -4.853 14.686 hybrid contribution 1.199 0.303 -1.033 1.611 sum -8.160 10.528 -5.886 14.562 Atomic orbital electron populations 1.21865 0.94026 1.02755 1.01915 1.22963 0.94616 0.95474 0.85574 0.91605 1.23289 0.96412 1.00637 0.97415 1.23155 0.96725 0.95779 0.90193 0.89683 1.60503 1.11039 1.02008 1.56067 1.20076 0.83349 0.98224 0.94893 1.21039 0.93163 1.04197 1.37321 0.90242 1.24905 0.98421 0.95138 0.94807 1.69899 1.16920 1.23680 1.43234 0.86819 0.81510 0.81255 0.79899 1.20102 1.21129 1.19269 1.24007 0.87417 0.96657 0.97432 1.88357 1.42893 1.64942 1.34254 0.91354 0.92327 0.91912 0.90047 0.89918 0.84158 0.99634 0.95891 0.92572 0.91195 0.91849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 9.62 37.16 0.36 -1.23 15 2 C 0.07 0.93 4.08 -25.70 -0.10 0.83 15 3 H 0.07 0.80 8.14 -51.93 -0.42 0.37 15 4 C -0.14 -1.96 6.26 -24.48 -0.15 -2.11 15 5 C 0.05 0.90 3.33 -65.77 -0.22 0.68 15 6 H 0.08 1.43 7.83 -51.93 -0.41 1.03 15 7 N -0.67 -13.58 6.39 -105.94 -0.68 -14.26 15 8 C 0.16 3.90 4.37 -4.97 -0.02 3.88 15 9 C -0.52 -14.79 9.87 -34.44 -0.34 -15.13 15 10 H 0.08 2.45 8.06 -52.48 -0.42 2.03 15 11 C 0.07 2.01 5.47 -17.82 -0.10 1.91 15 12 N -0.90 -27.55 13.96 55.43 0.77 -26.77 15 13 Si 0.88 21.46 27.47 -169.99 -4.67 16.79 15 14 H -0.28 -6.61 7.11 56.52 0.40 -6.21 15 15 H -0.29 -6.90 7.11 56.52 0.40 -6.50 15 16 H -0.27 -6.30 6.54 56.52 0.37 -5.93 15 17 C 0.02 0.38 7.52 37.88 0.28 0.66 15 18 O -0.39 -6.09 11.04 -35.23 -0.39 -6.47 15 19 H 0.07 0.60 8.14 -51.93 -0.42 0.18 15 20 H 0.06 0.59 8.14 -51.93 -0.42 0.16 15 21 H 0.06 0.69 8.14 -51.93 -0.42 0.27 15 22 H 0.08 1.06 8.14 -51.93 -0.42 0.63 15 23 H 0.08 1.18 8.06 -51.92 -0.42 0.77 15 24 H 0.34 6.74 8.03 -39.29 -0.32 6.43 15 25 H -0.01 -0.34 7.20 -51.93 -0.37 -0.71 15 26 H 0.02 0.56 7.51 -51.93 -0.39 0.17 15 27 H 0.26 7.56 8.31 -40.82 -0.34 7.22 15 28 H 0.07 1.13 7.48 -51.93 -0.39 0.74 15 29 H 0.06 1.00 8.14 -51.93 -0.42 0.57 15 LS Contribution 241.46 15.07 3.64 3.64 Total: -1.00 -30.34 241.46 -6.04 -36.37 By element: Atomic # 1 Polarization: 5.63 SS G_CDS: -4.42 Total: 1.22 kcal Atomic # 6 Polarization: -10.22 SS G_CDS: -0.29 Total: -10.51 kcal Atomic # 7 Polarization: -41.13 SS G_CDS: 0.10 Total: -41.03 kcal Atomic # 8 Polarization: -6.09 SS G_CDS: -0.39 Total: -6.47 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -4.67 Total: 16.79 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -30.34 -6.04 -36.37 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401860126.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.325 kcal (2) G-P(sol) polarization free energy of solvation -30.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds