Wall clock time and date at job start Sun Mar 29 2020 21:40:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 110.27435 * 2 1 4 4 C 1.54947 * 110.30754 * 122.08602 * 2 1 3 5 5 C 1.55304 * 100.94189 * 155.36106 * 4 2 1 6 6 H 1.08992 * 110.84540 * 84.05954 * 5 4 2 7 7 N 1.46905 * 110.84558 * 207.67834 * 5 4 2 8 8 C 1.46905 * 110.99675 * 205.00031 * 7 5 4 9 9 C 1.50698 * 109.47066 * 180.02562 * 8 7 5 10 10 H 1.08003 * 120.00168 * 359.97438 * 9 8 7 11 11 C 1.37877 * 120.00160 * 180.02562 * 9 8 7 12 12 N 1.31512 * 119.99961 * 180.02562 * 11 9 8 13 13 Si 1.86795 * 119.99836 * 359.97438 * 11 9 8 14 14 H 1.48499 * 109.47234 * 90.00658 * 13 11 9 15 15 H 1.48507 * 109.47516 * 210.00443 * 13 11 9 16 16 H 1.48499 * 109.47536 * 330.00596 * 13 11 9 17 17 C 1.54376 * 102.25478 * 325.86567 * 5 4 2 18 18 O 1.43240 * 107.58688 * 21.35477 * 17 5 4 19 19 H 1.08993 * 109.47571 * 297.91392 * 1 2 3 20 20 H 1.09007 * 109.46607 * 57.91954 * 1 2 3 21 21 H 1.09006 * 109.47298 * 177.90730 * 1 2 3 22 22 H 1.08995 * 111.12977 * 273.28346 * 4 2 1 23 23 H 1.09009 * 111.12280 * 37.44249 * 4 2 1 24 24 H 1.00899 * 111.00273 * 81.04959 * 7 5 4 25 25 H 1.08996 * 109.47184 * 300.00195 * 8 7 5 26 26 H 1.09006 * 109.46995 * 60.00215 * 8 7 5 27 27 H 0.97008 * 119.99717 * 179.97438 * 12 11 9 28 28 H 1.08997 * 109.83361 * 261.84404 * 17 5 4 29 29 H 1.09003 * 109.83212 * 140.86534 * 17 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9077 1.0224 0.0000 4 6 2.0678 -0.7719 1.2312 5 6 3.4699 -1.2018 0.7202 6 1 4.1973 -0.4033 0.8655 7 7 3.9101 -2.4385 1.3798 8 6 5.3757 -2.5388 1.3859 9 6 5.7888 -3.8173 2.0684 10 1 5.0378 -4.4881 2.4590 11 6 7.1256 -4.1303 2.1952 12 7 7.4860 -5.2463 2.7904 13 14 8.4246 -2.9700 1.5204 14 1 8.8091 -1.9929 2.5705 15 1 9.6194 -3.7499 1.1086 16 1 7.8781 -2.2445 0.3456 17 6 3.2113 -1.4428 -0.7825 18 8 2.0286 -0.7180 -1.1399 19 1 -0.3634 0.4810 0.9080 20 1 -0.3633 0.5459 -0.8708 21 1 -0.3634 -1.0270 -0.0375 22 1 2.1495 -0.1184 2.0997 23 1 1.4470 -1.6402 1.4523 24 1 3.4941 -3.2482 0.9446 25 1 5.7441 -2.5396 0.3601 26 1 5.7959 -1.6880 1.9223 27 1 8.4265 -5.4667 2.8793 28 1 3.0625 -2.5068 -0.9663 29 1 4.0576 -1.0803 -1.3662 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000401860126.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:28 Heat of formation + Delta-G solvation = -75.350966 kcal Electronic energy + Delta-G solvation = -11364.469328 eV Core-core repulsion = 9286.245515 eV Total energy + Delta-G solvation = -2078.223813 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.62322 -36.85617 -34.59014 -33.07212 -31.37389 -28.15909 -26.80076 -23.47076 -22.20640 -21.88987 -18.96949 -18.00518 -16.73551 -16.57206 -15.94460 -15.54225 -14.96621 -14.62997 -14.47141 -13.73826 -13.54648 -13.37153 -12.99985 -12.67674 -12.38508 -12.26631 -12.02422 -11.87039 -11.71262 -11.40485 -10.82979 -10.54178 -9.19810 -8.31936 -6.37215 1.34858 1.36196 1.46929 2.32597 2.76346 3.02125 3.42106 3.64111 3.87146 4.06977 4.12776 4.28890 4.48887 4.63923 4.67907 4.75690 4.85535 4.96924 5.01722 5.10216 5.19179 5.33479 5.48281 5.91427 6.03297 6.47498 6.58128 6.71902 7.27830 8.84741 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.081280 B = 0.008550 C = 0.008179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 344.406535 B = 3274.102187 C = 3422.599418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.068 3.932 3 H 0.081 0.919 4 C -0.133 4.133 5 C 0.048 3.952 6 H 0.088 0.912 7 N -0.673 5.673 8 C 0.173 3.827 9 C -0.532 4.532 10 H 0.037 0.963 11 C 0.008 3.992 12 N -0.947 5.947 13 Si 0.952 3.048 14 H -0.265 1.265 15 H -0.281 1.281 16 H -0.250 1.250 17 C 0.028 3.972 18 O -0.399 6.399 19 H 0.089 0.911 20 H 0.065 0.935 21 H 0.055 0.945 22 H 0.095 0.905 23 H 0.077 0.923 24 H 0.339 0.661 25 H -0.010 1.010 26 H 0.027 0.973 27 H 0.268 0.732 28 H 0.064 0.936 29 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.563 12.256 -6.141 16.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.011 3.989 3 H 0.099 0.901 4 C -0.171 4.171 5 C -0.063 4.063 6 H 0.107 0.893 7 N -0.304 5.304 8 C 0.045 3.955 9 C -0.570 4.570 10 H 0.056 0.944 11 C -0.189 4.189 12 N -0.587 5.587 13 Si 0.775 3.225 14 H -0.190 1.190 15 H -0.207 1.207 16 H -0.173 1.173 17 C -0.050 4.050 18 O -0.318 6.318 19 H 0.108 0.892 20 H 0.084 0.916 21 H 0.074 0.926 22 H 0.114 0.886 23 H 0.096 0.904 24 H 0.158 0.842 25 H 0.008 0.992 26 H 0.045 0.955 27 H 0.077 0.923 28 H 0.082 0.918 29 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -9.545 12.416 -5.652 16.650 hybrid contribution 1.143 -0.415 -0.748 1.428 sum -8.403 12.001 -6.400 15.987 Atomic orbital electron populations 1.21875 0.92170 1.02774 1.03416 1.23191 0.96112 0.95597 0.83955 0.90089 1.23268 0.94458 1.00861 0.98485 1.23259 0.98241 0.93951 0.90824 0.89349 1.60421 1.08931 1.03612 1.57409 1.19826 0.85658 0.95743 0.94286 1.21328 0.92686 1.05484 1.37473 0.94440 1.25891 1.01080 0.96936 0.95030 1.70054 1.17739 1.25964 1.44931 0.85646 0.78042 0.78936 0.79878 1.18954 1.20672 1.17328 1.23869 0.87878 0.96516 0.96779 1.88351 1.42674 1.65221 1.35571 0.89192 0.91574 0.92599 0.88627 0.90425 0.84183 0.99203 0.95488 0.92286 0.91823 0.91483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.69 9.62 71.98 0.69 -2.00 15 2 C 0.07 1.60 4.08 31.26 0.13 1.73 15 3 H 0.08 1.68 8.14 -2.39 -0.02 1.66 15 4 C -0.13 -3.43 6.26 32.05 0.20 -3.23 15 5 C 0.05 1.54 3.33 46.17 0.15 1.69 15 6 H 0.09 2.76 7.83 -2.39 -0.02 2.74 15 7 N -0.67 -27.04 6.39 -489.08 -3.12 -30.16 15 8 C 0.17 8.16 4.37 85.56 0.37 8.54 15 9 C -0.53 -30.77 9.87 25.60 0.25 -30.51 15 10 H 0.04 2.41 8.06 -2.91 -0.02 2.39 15 11 C 0.01 0.49 5.47 84.65 0.46 0.95 15 12 N -0.95 -59.15 13.96 21.45 0.30 -58.85 15 13 Si 0.95 43.66 27.47 68.60 1.88 45.54 15 14 H -0.26 -11.64 7.11 99.48 0.71 -10.93 15 15 H -0.28 -12.62 7.11 99.48 0.71 -11.91 15 16 H -0.25 -10.63 6.54 99.48 0.65 -9.98 15 17 C 0.03 0.86 7.52 72.45 0.55 1.40 15 18 O -0.40 -11.77 11.04 -148.98 -1.64 -13.41 15 19 H 0.09 1.28 8.14 -2.39 -0.02 1.26 15 20 H 0.07 1.14 8.14 -2.38 -0.02 1.12 15 21 H 0.05 1.11 8.14 -2.38 -0.02 1.09 15 22 H 0.10 2.21 8.14 -2.39 -0.02 2.19 15 23 H 0.08 2.09 8.06 -2.38 -0.02 2.08 15 24 H 0.34 13.54 8.03 -89.70 -0.72 12.82 15 25 H -0.01 -0.45 7.20 -2.39 -0.02 -0.47 15 26 H 0.03 1.26 7.51 -2.38 -0.02 1.24 15 27 H 0.27 15.56 8.31 -92.70 -0.77 14.79 15 28 H 0.06 2.00 7.48 -2.39 -0.02 1.98 15 29 H 0.07 1.98 8.14 -2.39 -0.02 1.96 15 Total: -1.00 -64.85 241.46 0.57 -64.29 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: 0.34 Total: 14.02 kcal Atomic # 6 Polarization: -24.24 SS G_CDS: 2.81 Total: -21.43 kcal Atomic # 7 Polarization: -86.18 SS G_CDS: -2.82 Total: -89.01 kcal Atomic # 8 Polarization: -11.77 SS G_CDS: -1.64 Total: -13.41 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 1.88 Total: 45.54 kcal Total: -64.85 0.57 -64.29 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401860126.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.065 kcal (2) G-P(sol) polarization free energy of solvation -64.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds