Wall clock time and date at job start Sun Mar 29 2020 21:40:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 110.33108 * 2 1 4 4 C 1.54483 * 110.37211 * 237.74912 * 2 1 3 5 5 C 1.54507 * 104.06211 * 217.07935 * 4 2 1 6 6 H 1.09000 * 110.50918 * 241.21758 * 5 4 2 7 7 N 1.46897 * 110.50881 * 118.64488 * 5 4 2 8 8 C 1.46906 * 110.99956 * 154.99564 * 7 5 4 9 9 C 1.50696 * 109.47235 * 179.97438 * 8 7 5 10 10 H 1.08004 * 120.00085 * 0.02562 * 9 8 7 11 11 C 1.37881 * 119.99961 * 179.97438 * 9 8 7 12 12 N 1.31517 * 119.99978 * 0.02562 * 11 9 8 13 13 Si 1.86796 * 119.99865 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47145 * 90.00720 * 13 11 9 15 15 H 1.48501 * 109.47349 * 210.00260 * 13 11 9 16 16 H 1.48500 * 109.47455 * 330.00458 * 13 11 9 17 17 C 1.54477 * 104.06510 * 359.97438 * 5 4 2 18 18 O 1.44428 * 110.37485 * 122.25031 * 2 1 3 19 19 H 1.09000 * 109.47144 * 180.70512 * 1 2 3 20 20 H 1.09005 * 109.46857 * 300.69549 * 1 2 3 21 21 H 1.08999 * 109.47209 * 60.69729 * 1 2 3 22 22 H 1.09005 * 110.50990 * 335.72659 * 4 2 1 23 23 H 1.09004 * 110.50692 * 98.29498 * 4 2 1 24 24 H 1.00895 * 111.00421 * 278.95356 * 7 5 4 25 25 H 1.09002 * 109.47397 * 300.00647 * 8 7 5 26 26 H 1.08999 * 109.47119 * 60.00143 * 8 7 5 27 27 H 0.96996 * 119.99958 * 179.97438 * 12 11 9 28 28 H 1.08996 * 110.37125 * 142.80919 * 17 5 4 29 29 H 1.08999 * 110.37542 * 265.14907 * 17 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9088 1.0221 0.0000 4 6 2.0678 -0.7728 -1.2248 5 6 3.3194 -1.5027 -0.6882 6 1 4.2112 -1.1745 -1.2222 7 7 3.1567 -2.9579 -0.8062 8 6 4.4614 -3.6292 -0.8793 9 6 4.2546 -5.1172 -0.9987 10 1 3.2541 -5.5235 -1.0188 11 6 5.3427 -5.9598 -1.0835 12 7 6.5610 -5.4650 -1.0595 13 14 5.0864 -7.8041 -1.2322 14 1 4.9992 -8.1776 -2.6669 15 1 6.2290 -8.5149 -0.6043 16 1 3.8272 -8.1860 -0.5439 17 6 3.3902 -1.0841 0.7971 18 8 2.0329 -0.7225 1.1450 19 1 -0.3633 -1.0276 0.0126 20 1 -0.3633 0.5246 0.8837 21 1 -0.3633 0.5030 -0.8962 22 1 1.3283 -1.4917 -1.5776 23 1 2.3388 -0.0821 -2.0233 24 1 2.6044 -3.3229 -0.0448 25 1 5.0082 -3.2669 -1.7498 26 1 5.0321 -3.4135 0.0239 27 1 7.3265 -6.0578 -1.1188 28 1 3.7289 -1.9187 1.4108 29 1 4.0543 -0.2284 0.9190 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000401860127.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:30 Heat of formation + Delta-G solvation = -56.477178 kcal Electronic energy + Delta-G solvation = -11388.027782 eV Core-core repulsion = 9310.622398 eV Total energy + Delta-G solvation = -2077.405384 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.27615 -34.88316 -32.49439 -31.86768 -29.40545 -26.01635 -25.41566 -22.00624 -20.91952 -20.33718 -16.62478 -16.14242 -15.26903 -14.99053 -14.62470 -13.94076 -13.58534 -12.74298 -12.51129 -12.09883 -11.93966 -11.57027 -11.28819 -11.05637 -10.90817 -10.73672 -10.55574 -10.39120 -9.86512 -9.59596 -9.18313 -8.48881 -7.30238 -6.04432 -4.06420 3.32310 3.37922 3.42163 4.14983 4.42412 4.90179 5.05599 5.22168 5.27007 5.31965 5.44325 5.59509 5.68171 5.76723 5.90543 6.07203 6.09734 6.20512 6.38310 6.47323 7.07641 7.22498 7.39575 7.77986 8.11088 8.37609 8.59048 9.02852 9.58705 11.06719 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.079356 B = 0.008198 C = 0.007925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 352.754503 B = 3414.785121 C = 3532.463394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.066 3.934 3 H 0.061 0.939 4 C -0.142 4.142 5 C 0.056 3.944 6 H 0.083 0.917 7 N -0.678 5.678 8 C 0.192 3.808 9 C -0.515 4.515 10 H 0.062 0.938 11 C 0.056 3.944 12 N -0.898 5.898 13 Si 0.900 3.100 14 H -0.280 1.280 15 H -0.287 1.287 16 H -0.273 1.273 17 C 0.016 3.984 18 O -0.375 6.375 19 H 0.065 0.935 20 H 0.057 0.943 21 H 0.066 0.934 22 H 0.086 0.914 23 H 0.070 0.930 24 H 0.334 0.666 25 H 0.028 0.972 26 H -0.013 1.013 27 H 0.261 0.739 28 H 0.092 0.908 29 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.608 9.487 1.364 12.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.008 3.992 3 H 0.078 0.922 4 C -0.180 4.180 5 C -0.056 4.056 6 H 0.102 0.898 7 N -0.308 5.308 8 C 0.065 3.935 9 C -0.554 4.554 10 H 0.081 0.919 11 C -0.145 4.145 12 N -0.538 5.538 13 Si 0.728 3.272 14 H -0.206 1.206 15 H -0.213 1.213 16 H -0.198 1.198 17 C -0.062 4.062 18 O -0.295 6.295 19 H 0.084 0.916 20 H 0.076 0.924 21 H 0.085 0.915 22 H 0.105 0.895 23 H 0.089 0.911 24 H 0.152 0.848 25 H 0.046 0.954 26 H 0.005 0.995 27 H 0.071 0.929 28 H 0.110 0.890 29 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.610 9.379 0.862 12.109 hybrid contribution 0.569 -0.839 0.639 1.198 sum -7.041 8.541 1.502 11.170 Atomic orbital electron populations 1.21778 0.93645 1.02953 1.01735 1.22988 0.95014 0.95096 0.86076 0.92153 1.23089 0.98646 0.99150 0.97154 1.22893 0.97577 0.91767 0.93365 0.89839 1.60741 1.20327 1.00059 1.49703 1.19621 0.84445 0.93739 0.95676 1.21186 0.93018 0.91118 1.50029 0.91939 1.24990 0.95053 0.99201 0.95306 1.69960 0.97799 1.35260 1.50770 0.86466 0.77674 0.84840 0.78234 1.20614 1.21294 1.19807 1.24266 0.83972 0.99958 0.98013 1.89159 1.27405 1.74728 1.38166 0.91613 0.92430 0.91465 0.89490 0.91112 0.84811 0.95406 0.99518 0.92894 0.88995 0.92811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.68 9.52 37.16 0.35 -1.32 15 2 C 0.07 0.92 3.91 -25.95 -0.10 0.82 15 3 H 0.06 0.75 8.14 -51.93 -0.42 0.33 15 4 C -0.14 -2.12 6.42 -25.16 -0.16 -2.29 15 5 C 0.06 1.01 3.45 -66.15 -0.23 0.78 15 6 H 0.08 1.52 7.82 -51.93 -0.41 1.12 15 7 N -0.68 -14.80 6.19 -106.34 -0.66 -15.46 15 8 C 0.19 5.04 5.30 -4.97 -0.03 5.01 15 9 C -0.51 -14.72 9.32 -34.44 -0.32 -15.05 15 10 H 0.06 1.76 7.81 -52.48 -0.41 1.35 15 11 C 0.06 1.61 5.46 -17.82 -0.10 1.51 15 12 N -0.90 -26.92 13.29 55.43 0.74 -26.18 15 13 Si 0.90 21.83 29.54 -169.99 -5.02 16.81 15 14 H -0.28 -6.72 7.11 56.52 0.40 -6.31 15 15 H -0.29 -6.87 7.11 56.52 0.40 -6.47 15 16 H -0.27 -6.50 7.11 56.52 0.40 -6.10 15 17 C 0.02 0.28 7.09 37.93 0.27 0.55 15 18 O -0.38 -6.34 11.37 -35.23 -0.40 -6.75 15 19 H 0.06 0.82 8.14 -51.93 -0.42 0.39 15 20 H 0.06 0.63 8.14 -51.93 -0.42 0.20 15 21 H 0.07 0.64 8.14 -51.93 -0.42 0.22 15 22 H 0.09 1.37 7.70 -51.93 -0.40 0.97 15 23 H 0.07 0.93 8.14 -51.93 -0.42 0.50 15 24 H 0.33 7.23 8.41 -39.29 -0.33 6.90 15 25 H 0.03 0.78 8.08 -51.93 -0.42 0.37 15 26 H -0.01 -0.36 8.14 -51.93 -0.42 -0.78 15 27 H 0.26 7.38 8.31 -40.82 -0.34 7.05 15 28 H 0.09 1.66 8.02 -51.93 -0.42 1.25 15 29 H 0.05 0.81 8.14 -51.93 -0.42 0.39 15 LS Contribution 245.30 15.07 3.70 3.70 Total: -1.00 -30.07 245.30 -6.44 -36.51 By element: Atomic # 1 Polarization: 5.84 SS G_CDS: -4.48 Total: 1.37 kcal Atomic # 6 Polarization: -9.68 SS G_CDS: -0.31 Total: -9.99 kcal Atomic # 7 Polarization: -41.72 SS G_CDS: 0.08 Total: -41.64 kcal Atomic # 8 Polarization: -6.34 SS G_CDS: -0.40 Total: -6.75 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -30.07 -6.44 -36.51 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401860127.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.972 kcal (2) G-P(sol) polarization free energy of solvation -30.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds