Wall clock time and date at job start Sun Mar 29 2020 21:41:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08994 * 110.56171 * 2 1 4 4 C 1.54484 * 110.50992 * 237.32336 * 2 1 3 5 5 O 1.44418 * 104.90071 * 265.38922 * 4 2 1 6 6 C 1.44428 * 105.27730 * 319.43393 * 5 4 2 7 7 C 1.54482 * 104.80095 * 40.51197 * 6 5 4 8 8 H 1.09002 * 110.50759 * 94.66577 * 7 6 5 9 9 N 1.46899 * 110.51108 * 217.23916 * 7 6 5 10 10 C 1.46899 * 110.99974 * 273.54608 * 9 7 6 11 11 C 1.50704 * 109.47125 * 179.97438 * 10 9 7 12 12 H 1.08002 * 119.99714 * 359.97438 * 11 10 9 13 13 C 1.37873 * 120.00113 * 180.02562 * 11 10 9 14 14 N 1.31510 * 120.00159 * 359.97438 * 13 11 10 15 15 Si 1.86804 * 120.00111 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.46838 * 359.97438 * 15 13 11 17 17 H 1.48494 * 109.47262 * 119.99635 * 15 13 11 18 18 H 1.48504 * 109.46864 * 239.99686 * 15 13 11 19 19 H 1.09004 * 109.46893 * 181.21890 * 1 2 3 20 20 H 1.08996 * 109.47128 * 301.22144 * 1 2 3 21 21 H 1.08999 * 109.46791 * 61.22053 * 1 2 3 22 22 H 1.09002 * 110.37173 * 146.50271 * 4 2 1 23 23 H 1.08999 * 110.37313 * 24.27693 * 4 2 1 24 24 H 1.09007 * 110.37191 * 159.34114 * 6 5 4 25 25 H 1.08999 * 110.37076 * 281.57154 * 6 5 4 26 26 H 1.00900 * 110.99856 * 37.50092 * 9 7 6 27 27 H 1.08995 * 109.47278 * 300.00315 * 10 9 7 28 28 H 1.09008 * 109.47108 * 60.00434 * 10 9 7 29 29 H 0.97004 * 120.00355 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9129 1.0205 0.0000 4 6 2.0713 -0.7812 -1.2179 5 8 2.3065 -2.1187 -0.7266 6 6 2.8765 -1.9460 0.5892 7 6 2.0734 -0.7857 1.2180 8 1 1.2513 -1.1726 1.8201 9 7 2.9508 0.0651 2.0330 10 6 3.0667 -0.4564 3.4014 11 6 3.9728 0.4401 4.2056 12 1 4.4183 1.3099 3.7458 13 6 4.2339 0.1492 5.5277 14 7 3.6918 -0.9103 6.0873 15 14 5.3564 1.2607 6.5247 16 1 5.8339 2.3770 5.6697 17 1 4.6074 1.8096 7.6835 18 1 6.5206 0.4788 7.0131 19 1 -0.3633 -1.0275 0.0219 20 1 -0.3633 0.5327 0.8788 21 1 -0.3633 0.4948 -0.9007 22 1 3.0024 -0.3372 -1.5702 23 1 1.3319 -0.7956 -2.0186 24 1 2.7541 -2.8551 1.1781 25 1 3.9315 -1.6825 0.5141 26 1 3.8593 0.1626 1.6050 27 1 2.0802 -0.4856 3.8639 28 1 3.4845 -1.4628 3.3725 29 1 3.8758 -1.1153 7.0175 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575483290.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:39 Heat of formation + Delta-G solvation = -56.804948 kcal Electronic energy + Delta-G solvation = -11446.446238 eV Core-core repulsion = 9369.026640 eV Total energy + Delta-G solvation = -2077.419597 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.35131 -34.95634 -32.93793 -31.93920 -28.33762 -26.31916 -25.37093 -22.36818 -21.26181 -19.91670 -16.63662 -15.84963 -15.68053 -15.02375 -14.55863 -13.68086 -13.52711 -13.06358 -12.49018 -12.24196 -12.07950 -11.59040 -11.44343 -11.02739 -10.70854 -10.59339 -10.51465 -10.39987 -9.91284 -9.51125 -9.18825 -8.52370 -7.35600 -6.06628 -4.09028 3.29199 3.36537 3.41477 4.22071 4.41206 4.88016 5.08379 5.10875 5.29308 5.40928 5.49794 5.57593 5.71827 5.89651 5.95128 6.02504 6.16436 6.27709 6.34089 6.50808 7.00595 7.21996 7.36153 7.74627 8.07839 8.31070 8.54410 9.00217 9.56307 11.04465 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.072824 B = 0.008512 C = 0.008325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 384.393794 B = 3288.608465 C = 3362.704346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.121 4.121 3 H 0.092 0.908 4 C 0.046 3.954 5 O -0.382 6.382 6 C 0.016 3.984 7 C 0.061 3.939 8 H 0.086 0.914 9 N -0.678 5.678 10 C 0.192 3.808 11 C -0.516 4.516 12 H 0.063 0.937 13 C 0.056 3.944 14 N -0.897 5.897 15 Si 0.899 3.101 16 H -0.272 1.272 17 H -0.284 1.284 18 H -0.285 1.285 19 H 0.054 0.946 20 H 0.060 0.940 21 H 0.051 0.949 22 H 0.054 0.946 23 H 0.085 0.915 24 H 0.088 0.912 25 H 0.058 0.942 26 H 0.330 0.670 27 H 0.029 0.971 28 H -0.012 1.012 29 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.126 0.552 -10.726 11.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.140 4.140 3 H 0.110 0.890 4 C -0.031 4.031 5 O -0.300 6.300 6 C -0.062 4.062 7 C -0.051 4.051 8 H 0.104 0.896 9 N -0.308 5.308 10 C 0.066 3.934 11 C -0.554 4.554 12 H 0.081 0.919 13 C -0.145 4.145 14 N -0.537 5.537 15 Si 0.727 3.273 16 H -0.196 1.196 17 H -0.210 1.210 18 H -0.211 1.211 19 H 0.073 0.927 20 H 0.079 0.921 21 H 0.070 0.930 22 H 0.073 0.927 23 H 0.104 0.896 24 H 0.106 0.894 25 H 0.076 0.924 26 H 0.147 0.853 27 H 0.047 0.953 28 H 0.006 0.994 29 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.680 0.702 -10.488 11.137 hybrid contribution 1.235 -0.115 0.686 1.418 sum -2.445 0.587 -9.801 10.119 Atomic orbital electron populations 1.21747 0.94473 1.01677 1.01537 1.22594 0.96424 1.00766 0.94258 0.88964 1.23493 0.99589 0.83296 0.96702 1.89054 1.83179 1.26048 1.31693 1.24337 0.97208 1.00928 0.83755 1.23051 0.96968 0.90829 0.94214 0.89580 1.60740 1.16024 1.49557 1.04476 1.19616 0.97256 0.93636 0.82904 1.21217 1.28052 1.10536 0.95643 0.91886 1.24991 0.96330 0.95427 0.97797 1.69968 1.44258 1.26379 1.13066 0.86419 0.80285 0.80577 0.79998 1.19641 1.20960 1.21071 0.92715 0.92130 0.93016 0.92739 0.89643 0.89383 0.92387 0.85257 0.95318 0.99430 0.92906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 8.95 37.16 0.33 -1.46 15 2 C -0.12 -1.79 3.52 -88.89 -0.31 -2.10 15 3 H 0.09 1.39 7.98 -51.93 -0.41 0.97 15 4 C 0.05 0.63 7.17 37.94 0.27 0.90 15 5 O -0.38 -6.31 11.65 -35.23 -0.41 -6.72 15 6 C 0.02 0.28 7.24 37.94 0.27 0.55 15 7 C 0.06 1.10 3.07 -65.99 -0.20 0.90 15 8 H 0.09 1.64 7.47 -51.93 -0.39 1.25 15 9 N -0.68 -14.32 6.23 -106.17 -0.66 -14.98 15 10 C 0.19 4.99 5.29 -4.97 -0.03 4.96 15 11 C -0.52 -14.54 9.32 -34.44 -0.32 -14.86 15 12 H 0.06 1.75 7.81 -52.49 -0.41 1.34 15 13 C 0.06 1.60 5.46 -17.82 -0.10 1.50 15 14 N -0.90 -26.74 13.29 55.43 0.74 -26.00 15 15 Si 0.90 21.59 29.54 -169.99 -5.02 16.57 15 16 H -0.27 -6.39 7.11 56.52 0.40 -5.99 15 17 H -0.28 -6.75 7.11 56.52 0.40 -6.35 15 18 H -0.28 -6.75 7.11 56.52 0.40 -6.34 15 19 H 0.05 0.72 8.14 -51.93 -0.42 0.30 15 20 H 0.06 0.83 8.14 -51.93 -0.42 0.41 15 21 H 0.05 0.57 8.14 -51.93 -0.42 0.14 15 22 H 0.05 0.69 8.14 -51.93 -0.42 0.27 15 23 H 0.09 1.00 7.87 -51.93 -0.41 0.59 15 24 H 0.09 1.50 8.14 -51.92 -0.42 1.08 15 25 H 0.06 0.97 7.61 -51.93 -0.40 0.58 15 26 H 0.33 6.66 8.16 -39.29 -0.32 6.34 15 27 H 0.03 0.81 8.08 -51.93 -0.42 0.39 15 28 H -0.01 -0.33 8.12 -51.92 -0.42 -0.75 15 29 H 0.26 7.32 8.31 -40.82 -0.34 6.98 15 LS Contribution 244.17 15.07 3.68 3.68 Total: -1.00 -29.70 244.17 -6.18 -35.89 By element: Atomic # 1 Polarization: 5.61 SS G_CDS: -4.43 Total: 1.18 kcal Atomic # 6 Polarization: -9.53 SS G_CDS: -0.08 Total: -9.62 kcal Atomic # 7 Polarization: -41.05 SS G_CDS: 0.07 Total: -40.98 kcal Atomic # 8 Polarization: -6.31 SS G_CDS: -0.41 Total: -6.72 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 3.68 Total: 3.68 kcal Total: -29.70 -6.18 -35.89 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575483290.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.917 kcal (2) G-P(sol) polarization free energy of solvation -29.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds