Wall clock time and date at job start Sun Mar 29 2020 21:51:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99973 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99710 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99891 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99884 * 3 2 1 7 7 C 1.37877 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99721 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00120 * 359.97438 * 7 2 1 10 10 N 1.46904 * 109.46874 * 180.02562 * 9 7 2 11 11 C 1.47842 * 111.00218 * 290.84411 * 10 9 7 12 12 C 1.54901 * 104.79257 * 213.64149 * 11 10 9 13 13 C 1.55137 * 101.65712 * 37.06782 * 12 11 10 14 14 H 1.09001 * 110.85296 * 82.80085 * 13 12 11 15 15 C 1.53004 * 110.70559 * 205.96061 * 13 12 11 16 16 F 1.39902 * 109.47419 * 293.60286 * 15 13 12 17 17 C 1.47444 * 110.99712 * 170.00041 * 10 9 7 18 18 H 0.96998 * 119.99255 * 180.02562 * 1 2 3 19 19 H 1.09003 * 109.47048 * 299.99904 * 9 7 2 20 20 H 1.08996 * 109.46943 * 60.00189 * 9 7 2 21 21 H 1.09004 * 110.37216 * 332.46496 * 11 10 9 22 22 H 1.08997 * 110.37403 * 94.80675 * 11 10 9 23 23 H 1.09005 * 110.99224 * 278.97411 * 12 11 10 24 24 H 1.09005 * 110.99188 * 155.16504 * 12 11 10 25 25 H 1.09006 * 109.46923 * 53.60063 * 15 13 12 26 26 H 1.08995 * 109.46827 * 173.59782 * 15 13 12 27 27 H 1.08997 * 109.88799 * 242.66735 * 17 10 9 28 28 H 1.09004 * 109.88968 * 3.68437 * 17 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 1.4466 2.6527 -0.7001 6 1 3.5467 1.4402 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 7 2.2058 -3.6157 -0.0005 11 6 2.9234 -3.6992 -1.2904 12 6 3.1617 -5.2135 -1.5131 13 6 1.8503 -5.8231 -0.9514 14 1 1.0565 -5.7906 -1.6977 15 6 2.0821 -7.2579 -0.4732 16 9 2.3802 -8.0729 -1.5706 17 6 1.5188 -4.8982 0.2385 18 1 -0.4849 -0.8401 0.0004 19 1 0.6248 -2.5571 0.8897 20 1 0.6241 -2.5567 -0.8903 21 1 2.3101 -3.2896 -2.0931 22 1 3.8745 -3.1701 -1.2305 23 1 4.0268 -5.5600 -0.9477 24 1 3.2744 -5.4393 -2.5735 25 1 2.9148 -7.2765 0.2300 26 1 1.1824 -7.6265 0.0193 27 1 1.8780 -5.3440 1.1660 28 1 0.4424 -4.7370 0.2974 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000711432405.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:22 Heat of formation + Delta-G solvation = -84.288937 kcal Electronic energy + Delta-G solvation = -11584.094085 eV Core-core repulsion = 9354.710909 eV Total energy + Delta-G solvation = -2229.383176 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 187.107 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -48.56918 -39.95827 -35.67158 -33.28082 -30.61300 -28.45058 -25.86293 -24.56446 -21.98121 -21.42590 -19.07518 -17.36005 -16.95386 -16.60318 -16.16501 -15.61187 -15.40322 -15.04582 -14.53618 -13.88575 -13.73398 -13.23170 -12.85566 -12.56642 -12.44776 -12.11563 -12.03759 -11.91652 -11.62346 -11.49448 -10.79551 -10.60444 -9.18183 -8.71888 -6.42755 1.52339 1.61624 1.79963 2.54187 3.10918 3.20815 3.39070 3.53362 3.69329 4.10905 4.17513 4.32835 4.33798 4.54089 4.64594 4.73177 4.78360 4.82006 4.92568 4.99384 5.10632 5.25423 5.74295 5.94321 6.26657 6.36663 6.59094 7.38262 8.67186 Molecular weight = 187.11amu Principal moments of inertia in cm(-1) A = 0.095870 B = 0.008304 C = 0.007929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 291.991043 B = 3370.996809 C = 3530.627973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.038 4.038 3 Si 1.125 2.875 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.270 1.270 7 C -0.601 4.601 8 H 0.053 0.947 9 C 0.189 3.811 10 N -0.536 5.536 11 C 0.055 3.945 12 C -0.112 4.112 13 C -0.138 4.138 14 H 0.075 0.925 15 C 0.079 3.921 16 F -0.230 7.230 17 C 0.045 3.955 18 H 0.253 0.747 19 H -0.001 1.001 20 H -0.042 1.042 21 H 0.020 0.980 22 H 0.068 0.932 23 H 0.089 0.911 24 H 0.085 0.915 25 H 0.096 0.904 26 H 0.095 0.905 27 H 0.092 0.908 28 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.260 -11.817 -1.233 12.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.235 4.235 3 Si 0.946 3.054 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.194 1.194 7 C -0.639 4.639 8 H 0.071 0.929 9 C 0.062 3.938 10 N -0.260 5.260 11 C -0.073 4.073 12 C -0.150 4.150 13 C -0.158 4.158 14 H 0.094 0.906 15 C 0.024 3.976 16 F -0.211 7.211 17 C -0.083 4.083 18 H 0.062 0.938 19 H 0.017 0.983 20 H -0.025 1.025 21 H 0.038 0.962 22 H 0.086 0.914 23 H 0.108 0.892 24 H 0.103 0.897 25 H 0.114 0.886 26 H 0.114 0.886 27 H 0.110 0.890 28 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 5.425 -10.114 -0.848 11.508 hybrid contribution -0.918 -1.626 -0.700 1.994 sum 4.507 -11.739 -1.549 12.670 Atomic orbital electron populations 1.70908 1.07932 1.29606 1.49092 1.27473 0.96520 1.06800 0.92666 0.82836 0.74049 0.70680 0.77879 1.19676 1.20743 1.19445 1.22317 0.94873 0.92294 1.54463 0.92888 1.19752 0.90730 0.90755 0.92570 1.63524 1.27350 1.02712 1.32418 1.22852 0.98182 0.96937 0.89351 1.22757 0.97327 0.92826 1.02049 1.22956 0.98939 0.95639 0.98230 0.90619 1.22037 1.03917 0.86253 0.85365 1.92728 1.95310 1.74786 1.58322 1.22854 0.97170 0.89520 0.98795 0.93796 0.98250 1.02479 0.96173 0.91368 0.89209 0.89671 0.88593 0.88640 0.89032 0.94119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.79 13.65 21.45 0.29 -58.50 15 2 C -0.04 -2.20 5.46 84.65 0.46 -1.74 15 3 Si 1.12 51.00 29.90 68.60 2.05 53.05 15 4 H -0.27 -11.56 7.11 99.48 0.71 -10.86 15 5 H -0.28 -12.58 7.11 99.48 0.71 -11.87 15 6 H -0.27 -11.31 7.11 99.48 0.71 -10.60 15 7 C -0.60 -35.26 8.80 25.60 0.23 -35.04 15 8 H 0.05 3.09 7.77 -2.91 -0.02 3.07 15 9 C 0.19 10.26 3.64 85.56 0.31 10.57 15 10 N -0.54 -23.66 5.15 -890.12 -4.59 -28.25 15 11 C 0.05 2.15 6.14 86.77 0.53 2.68 15 12 C -0.11 -3.22 6.44 31.98 0.21 -3.01 15 13 C -0.14 -3.80 3.30 -9.62 -0.03 -3.83 15 14 H 0.08 2.19 8.14 -2.39 -0.02 2.17 15 15 C 0.08 1.64 6.82 71.98 0.49 2.13 15 16 F -0.23 -5.68 17.26 44.97 0.78 -4.91 15 17 C 0.04 1.52 6.46 86.64 0.56 2.08 15 18 H 0.25 16.07 7.22 -92.71 -0.67 15.40 15 19 H 0.00 -0.03 7.90 -2.39 -0.02 -0.05 15 20 H -0.04 -2.45 7.72 -2.39 -0.02 -2.47 15 21 H 0.02 0.87 7.62 -2.38 -0.02 0.85 15 22 H 0.07 2.72 8.14 -2.39 -0.02 2.70 15 23 H 0.09 2.30 8.02 -2.38 -0.02 2.29 15 24 H 0.08 2.21 8.14 -2.38 -0.02 2.20 15 25 H 0.10 1.68 8.11 -2.38 -0.02 1.66 15 26 H 0.10 1.59 8.14 -2.39 -0.02 1.57 15 27 H 0.09 2.69 7.82 -2.39 -0.02 2.67 15 28 H 0.04 1.45 7.55 -2.39 -0.02 1.44 15 Total: -1.00 -67.11 236.62 2.51 -64.60 By element: Atomic # 1 Polarization: -1.07 SS G_CDS: 1.22 Total: 0.15 kcal Atomic # 6 Polarization: -28.92 SS G_CDS: 2.76 Total: -26.16 kcal Atomic # 7 Polarization: -82.45 SS G_CDS: -4.29 Total: -86.74 kcal Atomic # 9 Polarization: -5.68 SS G_CDS: 0.78 Total: -4.91 kcal Atomic # 14 Polarization: 51.00 SS G_CDS: 2.05 Total: 53.05 kcal Total: -67.11 2.51 -64.60 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711432405.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.686 kcal (2) G-P(sol) polarization free energy of solvation -67.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds