Wall clock time and date at job start Sun Mar 29 2020 21:35:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86803 * 119.99912 * 2 1 4 4 H 1.48496 * 109.47049 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46978 * 300.00176 * 3 2 1 6 6 H 1.48495 * 109.46952 * 59.99700 * 3 2 1 7 7 C 1.37875 * 120.00034 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99528 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00077 * 359.97438 * 7 2 1 10 10 N 1.46899 * 109.47052 * 180.02562 * 9 7 2 11 11 C 1.46902 * 111.00008 * 179.97438 * 10 9 7 12 12 H 1.09001 * 109.47129 * 34.99880 * 11 10 9 13 13 C 1.53005 * 109.47006 * 274.99712 * 11 10 9 14 14 O 1.42893 * 109.47304 * 295.68048 * 13 11 10 15 15 C 1.52998 * 109.47223 * 154.99980 * 11 10 9 16 16 C 1.52995 * 117.51831 * 226.02896 * 15 11 10 17 17 C 1.53002 * 117.49840 * 294.66051 * 15 11 10 18 18 H 0.96993 * 119.99874 * 0.02562 * 1 2 3 19 19 H 1.08998 * 109.47435 * 60.00232 * 9 7 2 20 20 H 1.09004 * 109.46985 * 300.00053 * 9 7 2 21 21 H 1.00899 * 111.00354 * 303.95117 * 10 9 7 22 22 H 1.08996 * 109.46727 * 55.68769 * 13 11 10 23 23 H 1.09002 * 109.47133 * 175.68226 * 13 11 10 24 24 H 0.96699 * 114.00123 * 179.97438 * 14 13 11 25 25 H 1.08999 * 115.55257 * 80.32862 * 15 11 10 26 26 H 1.09002 * 117.50558 * 214.96745 * 16 15 11 27 27 H 1.09000 * 117.50064 * 359.97438 * 16 15 11 28 28 H 1.09001 * 117.49580 * 359.97438 * 17 15 11 29 29 H 1.09001 * 117.49739 * 144.99861 * 17 15 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3964 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 7 2.2057 -3.6156 -0.0005 11 6 1.5055 -4.9070 0.0001 12 1 0.5920 -4.8253 -0.5891 13 6 1.1524 -5.2950 1.4374 14 8 2.3533 -5.5003 2.1841 15 6 2.4114 -5.9787 -0.6095 16 6 1.7933 -6.9224 -1.6430 17 6 2.7759 -5.8376 -2.0888 18 1 -0.4849 0.8400 -0.0004 19 1 0.6241 -2.5567 -0.8903 20 1 0.6248 -2.5570 0.8897 21 1 2.8406 -3.5486 -0.7819 22 1 0.5708 -4.4959 1.8969 23 1 0.5663 -6.2140 1.4321 24 1 2.2051 -5.7492 3.1066 25 1 3.1683 -6.3899 0.0583 26 1 2.1436 -7.9546 -1.6552 27 1 0.7409 -6.7803 -1.8886 28 1 2.3700 -4.9816 -2.6277 29 1 3.7727 -6.1561 -2.3941 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000843080126.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:02 Heat of formation + Delta-G solvation = -31.763605 kcal Electronic energy + Delta-G solvation = -11363.800386 eV Core-core repulsion = 9287.466663 eV Total energy + Delta-G solvation = -2076.333723 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -38.21156 -35.76682 -34.23035 -32.18226 -28.61723 -25.80205 -23.12652 -22.11921 -21.09406 -19.49652 -16.89103 -16.52653 -15.55731 -14.74116 -14.58029 -13.74304 -13.35112 -13.04598 -12.56031 -12.13051 -11.50836 -11.33476 -11.31686 -10.79754 -10.71560 -10.41208 -10.13442 -9.85531 -9.67324 -9.38024 -9.08978 -8.45685 -7.16764 -6.00865 -4.02009 3.33038 3.40052 3.46208 4.04694 4.46423 4.79289 4.95619 5.10484 5.20846 5.35287 5.46043 5.68345 5.80218 5.88986 5.99313 6.09444 6.25495 6.32235 6.35841 6.68035 7.27763 7.44430 7.83779 8.11825 8.19966 8.49906 8.68685 9.08464 9.62946 11.10490 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.050138 B = 0.009537 C = 0.008885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.320506 B = 2935.372551 C = 3150.497950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.054 3.946 3 Si 0.899 3.101 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.510 4.510 8 H 0.063 0.937 9 C 0.193 3.807 10 N -0.674 5.674 11 C 0.115 3.885 12 H 0.045 0.955 13 C 0.094 3.906 14 O -0.555 6.555 15 C -0.136 4.136 16 C -0.186 4.186 17 C -0.183 4.183 18 H 0.260 0.740 19 H -0.016 1.016 20 H 0.026 0.974 21 H 0.332 0.668 22 H 0.047 0.953 23 H 0.033 0.967 24 H 0.364 0.636 25 H 0.113 0.887 26 H 0.089 0.911 27 H 0.090 0.910 28 H 0.093 0.907 29 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.001 -11.189 -0.361 11.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.147 4.147 3 Si 0.727 3.273 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.548 4.548 8 H 0.081 0.919 9 C 0.066 3.934 10 N -0.306 5.306 11 C 0.005 3.995 12 H 0.062 0.938 13 C 0.016 3.984 14 O -0.358 6.358 15 C -0.155 4.155 16 C -0.224 4.224 17 C -0.220 4.220 18 H 0.070 0.930 19 H 0.001 0.999 20 H 0.044 0.956 21 H 0.149 0.851 22 H 0.065 0.935 23 H 0.051 0.949 24 H 0.209 0.791 25 H 0.131 0.869 26 H 0.108 0.892 27 H 0.108 0.892 28 H 0.111 0.889 29 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 2.202 -10.883 -0.260 11.106 hybrid contribution -0.357 0.793 -0.390 0.953 sum 1.844 -10.090 -0.650 10.278 Atomic orbital electron populations 1.69974 1.06093 1.26615 1.51329 1.24996 0.94876 0.99378 0.95420 0.86422 0.80135 0.83308 0.77446 1.19608 1.21130 1.21027 1.21239 0.93626 0.90200 1.49773 0.91868 1.19626 0.90665 0.87690 0.95414 1.60591 1.20630 1.00100 1.49234 1.21107 0.94783 0.90356 0.93278 0.93765 1.22126 0.86279 0.97482 0.92555 1.86582 1.31509 1.92338 1.25349 1.22400 1.02150 0.99752 0.91196 1.22984 0.98702 0.95537 1.05137 1.22905 0.99849 1.01043 0.98206 0.93031 0.99869 0.95596 0.85067 0.93451 0.94864 0.79126 0.86922 0.89231 0.89185 0.88876 0.88998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.32 13.29 55.43 0.74 -26.58 15 2 C 0.05 1.58 5.46 -17.82 -0.10 1.48 15 3 Si 0.90 22.11 29.54 -169.99 -5.02 17.09 15 4 H -0.27 -6.57 7.11 56.52 0.40 -6.17 15 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 15 6 H -0.28 -6.91 7.11 56.52 0.40 -6.51 15 7 C -0.51 -14.88 9.32 -34.44 -0.32 -15.20 15 8 H 0.06 1.83 7.81 -52.49 -0.41 1.42 15 9 C 0.19 5.20 5.24 -4.98 -0.03 5.18 15 10 N -0.67 -15.33 6.24 -107.99 -0.67 -16.00 15 11 C 0.12 2.17 2.58 -67.71 -0.17 1.99 15 12 H 0.04 0.86 7.60 -51.93 -0.39 0.46 15 13 C 0.09 1.62 6.80 37.16 0.25 1.88 15 14 O -0.55 -9.38 12.69 -35.23 -0.45 -9.83 15 15 C -0.14 -2.17 5.03 -90.62 -0.46 -2.63 15 16 C -0.19 -2.47 10.18 -26.73 -0.27 -2.74 15 17 C -0.18 -2.63 9.57 -26.73 -0.26 -2.89 15 18 H 0.26 7.41 8.31 -40.82 -0.34 7.07 15 19 H -0.02 -0.47 8.06 -51.93 -0.42 -0.88 15 20 H 0.03 0.75 7.37 -51.93 -0.38 0.37 15 21 H 0.33 7.34 7.77 -39.29 -0.31 7.03 15 22 H 0.05 0.89 7.36 -51.93 -0.38 0.51 15 23 H 0.03 0.48 8.14 -51.93 -0.42 0.06 15 24 H 0.36 4.31 9.12 45.56 0.42 4.73 15 25 H 0.11 1.86 7.47 -51.93 -0.39 1.47 15 26 H 0.09 1.02 8.14 -51.93 -0.42 0.60 15 27 H 0.09 1.17 8.08 -51.93 -0.42 0.75 15 28 H 0.09 1.43 8.14 -51.93 -0.42 1.01 15 29 H 0.09 1.18 8.14 -51.93 -0.42 0.76 15 LS Contribution 248.75 15.07 3.75 3.75 Total: -1.00 -31.80 248.75 -6.52 -38.32 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: -3.51 Total: 6.18 kcal Atomic # 6 Polarization: -11.58 SS G_CDS: -1.35 Total: -12.93 kcal Atomic # 7 Polarization: -42.64 SS G_CDS: 0.06 Total: -42.58 kcal Atomic # 8 Polarization: -9.38 SS G_CDS: -0.45 Total: -9.83 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -31.80 -6.52 -38.32 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843080126.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.559 kcal (2) G-P(sol) polarization free energy of solvation -31.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds