Wall clock time and date at job start Sun Mar 29 2020 21:35:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86803 * 119.99912 * 2 1 4 4 H 1.48496 * 109.47049 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46978 * 300.00176 * 3 2 1 6 6 H 1.48495 * 109.46952 * 59.99700 * 3 2 1 7 7 C 1.37875 * 120.00034 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99528 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00077 * 359.97438 * 7 2 1 10 10 N 1.46899 * 109.47052 * 180.02562 * 9 7 2 11 11 C 1.46902 * 111.00008 * 179.97438 * 10 9 7 12 12 H 1.09001 * 109.47129 * 34.99880 * 11 10 9 13 13 C 1.53005 * 109.47006 * 274.99712 * 11 10 9 14 14 O 1.42893 * 109.47304 * 295.68048 * 13 11 10 15 15 C 1.52998 * 109.47223 * 154.99980 * 11 10 9 16 16 C 1.52995 * 117.51831 * 226.02896 * 15 11 10 17 17 C 1.53002 * 117.49840 * 294.66051 * 15 11 10 18 18 H 0.96993 * 119.99874 * 0.02562 * 1 2 3 19 19 H 1.08998 * 109.47435 * 60.00232 * 9 7 2 20 20 H 1.09004 * 109.46985 * 300.00053 * 9 7 2 21 21 H 1.00899 * 111.00354 * 303.95117 * 10 9 7 22 22 H 1.08996 * 109.46727 * 55.68769 * 13 11 10 23 23 H 1.09002 * 109.47133 * 175.68226 * 13 11 10 24 24 H 0.96699 * 114.00123 * 179.97438 * 14 13 11 25 25 H 1.08999 * 115.55257 * 80.32862 * 15 11 10 26 26 H 1.09002 * 117.50558 * 214.96745 * 16 15 11 27 27 H 1.09000 * 117.50064 * 359.97438 * 16 15 11 28 28 H 1.09001 * 117.49580 * 359.97438 * 17 15 11 29 29 H 1.09001 * 117.49739 * 144.99861 * 17 15 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3964 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 7 2.2057 -3.6156 -0.0005 11 6 1.5055 -4.9070 0.0001 12 1 0.5920 -4.8253 -0.5891 13 6 1.1524 -5.2950 1.4374 14 8 2.3533 -5.5003 2.1841 15 6 2.4114 -5.9787 -0.6095 16 6 1.7933 -6.9224 -1.6430 17 6 2.7759 -5.8376 -2.0888 18 1 -0.4849 0.8400 -0.0004 19 1 0.6241 -2.5567 -0.8903 20 1 0.6248 -2.5570 0.8897 21 1 2.8406 -3.5486 -0.7819 22 1 0.5708 -4.4959 1.8969 23 1 0.5663 -6.2140 1.4321 24 1 2.2051 -5.7492 3.1066 25 1 3.1683 -6.3899 0.0583 26 1 2.1436 -7.9546 -1.6552 27 1 0.7409 -6.7803 -1.8886 28 1 2.3700 -4.9816 -2.6277 29 1 3.7727 -6.1561 -2.3941 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000843080126.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:01 Heat of formation + Delta-G solvation = -56.564995 kcal Electronic energy + Delta-G solvation = -11364.875854 eV Core-core repulsion = 9287.466663 eV Total energy + Delta-G solvation = -2077.409192 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.59513 -37.04023 -36.09250 -34.22571 -30.35050 -27.75697 -24.80044 -23.30452 -22.82652 -20.94332 -18.61393 -18.22716 -17.13777 -16.60855 -16.04736 -15.31393 -14.98916 -14.65755 -14.25277 -13.86437 -13.36861 -13.06392 -12.68376 -12.53362 -12.39754 -12.18932 -11.72885 -11.35401 -11.14402 -10.91495 -10.76698 -10.66043 -9.05264 -8.24278 -6.35375 1.39920 1.40877 1.55325 2.39063 2.85802 3.08807 3.48843 3.61944 3.77429 3.99954 4.21073 4.31966 4.49256 4.63952 4.75712 4.79105 4.89971 5.01944 5.07068 5.24920 5.25720 5.40003 5.61762 6.02330 6.49011 6.72453 6.88764 7.06809 7.35894 8.87657 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.050138 B = 0.009537 C = 0.008885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.320506 B = 2935.372551 C = 3150.497950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.001 3.999 3 Si 0.975 3.025 4 H -0.264 1.264 5 H -0.275 1.275 6 H -0.277 1.277 7 C -0.535 4.535 8 H 0.061 0.939 9 C 0.210 3.790 10 N -0.676 5.676 11 C 0.108 3.892 12 H 0.035 0.965 13 C 0.098 3.902 14 O -0.570 6.570 15 C -0.150 4.150 16 C -0.160 4.160 17 C -0.186 4.186 18 H 0.266 0.734 19 H -0.042 1.042 20 H -0.001 1.001 21 H 0.333 0.667 22 H 0.021 0.979 23 H 0.069 0.931 24 H 0.386 0.614 25 H 0.111 0.889 26 H 0.117 0.883 27 H 0.092 0.908 28 H 0.077 0.923 29 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.921 -11.799 -0.547 12.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.197 4.197 3 Si 0.799 3.201 4 H -0.188 1.188 5 H -0.201 1.201 6 H -0.202 1.202 7 C -0.574 4.574 8 H 0.079 0.921 9 C 0.083 3.917 10 N -0.307 5.307 11 C -0.002 4.002 12 H 0.052 0.948 13 C 0.020 3.980 14 O -0.377 6.377 15 C -0.169 4.169 16 C -0.198 4.198 17 C -0.223 4.223 18 H 0.074 0.926 19 H -0.025 1.025 20 H 0.017 0.983 21 H 0.151 0.849 22 H 0.040 0.960 23 H 0.087 0.913 24 H 0.234 0.766 25 H 0.129 0.871 26 H 0.135 0.865 27 H 0.110 0.890 28 H 0.096 0.904 29 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 3.125 -11.522 -0.431 11.947 hybrid contribution -0.669 0.914 -0.311 1.175 sum 2.456 -10.608 -0.742 10.914 Atomic orbital electron populations 1.70093 1.07788 1.27985 1.51627 1.25962 0.95822 1.03397 0.94483 0.85254 0.78854 0.78136 0.77863 1.18809 1.20076 1.20248 1.21566 0.93719 0.91549 1.50532 0.92084 1.19243 0.90586 0.89051 0.92844 1.60517 1.20036 1.00824 1.49325 1.21250 0.94775 0.89360 0.94842 0.94755 1.22024 0.86437 0.98189 0.91366 1.86514 1.31469 1.92460 1.27210 1.22196 1.02561 1.00247 0.91850 1.23083 0.98652 0.96299 1.01722 1.22965 1.01320 1.01322 0.96683 0.92558 1.02463 0.98265 0.84899 0.96032 0.91323 0.76561 0.87092 0.86477 0.88955 0.90437 0.87113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.50 13.29 21.45 0.28 -57.22 15 2 C 0.00 0.08 5.46 84.65 0.46 0.54 15 3 Si 0.97 45.32 29.54 68.60 2.03 47.35 15 4 H -0.26 -11.85 7.11 99.48 0.71 -11.15 15 5 H -0.28 -12.31 7.11 99.48 0.71 -11.60 15 6 H -0.28 -12.50 7.11 99.48 0.71 -11.79 15 7 C -0.54 -31.81 9.32 25.60 0.24 -31.57 15 8 H 0.06 3.57 7.81 -2.91 -0.02 3.55 15 9 C 0.21 11.79 5.24 85.56 0.45 12.23 15 10 N -0.68 -31.34 6.24 -495.57 -3.09 -34.43 15 11 C 0.11 4.05 2.58 44.92 0.12 4.17 15 12 H 0.03 1.36 7.60 -2.39 -0.02 1.34 15 13 C 0.10 3.34 6.80 71.98 0.49 3.83 15 14 O -0.57 -18.64 12.69 -148.98 -1.89 -20.53 15 15 C -0.15 -4.55 5.03 -10.79 -0.05 -4.61 15 16 C -0.16 -3.81 10.18 30.59 0.31 -3.50 15 17 C -0.19 -5.05 9.57 30.60 0.29 -4.75 15 18 H 0.27 15.21 8.31 -92.71 -0.77 14.44 15 19 H -0.04 -2.52 8.06 -2.39 -0.02 -2.54 15 20 H 0.00 -0.04 7.37 -2.39 -0.02 -0.06 15 21 H 0.33 14.99 7.77 -89.69 -0.70 14.29 15 22 H 0.02 0.83 7.36 -2.39 -0.02 0.81 15 23 H 0.07 1.84 8.14 -2.39 -0.02 1.82 15 24 H 0.39 8.56 9.12 -74.06 -0.68 7.88 15 25 H 0.11 3.45 7.47 -2.39 -0.02 3.43 15 26 H 0.12 2.19 8.14 -2.39 -0.02 2.17 15 27 H 0.09 2.18 8.08 -2.39 -0.02 2.16 15 28 H 0.08 2.35 8.14 -2.39 -0.02 2.33 15 29 H 0.11 2.58 8.14 -2.39 -0.02 2.56 15 Total: -1.00 -68.24 248.75 -0.60 -68.84 By element: Atomic # 1 Polarization: 19.87 SS G_CDS: -0.23 Total: 19.64 kcal Atomic # 6 Polarization: -25.95 SS G_CDS: 2.30 Total: -23.65 kcal Atomic # 7 Polarization: -88.84 SS G_CDS: -2.81 Total: -91.65 kcal Atomic # 8 Polarization: -18.64 SS G_CDS: -1.89 Total: -20.53 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.35 kcal Total: -68.24 -0.60 -68.84 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843080126.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.271 kcal (2) G-P(sol) polarization free energy of solvation -68.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds