Wall clock time and date at job start Sun Mar 29 2020 21:27:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.37096 * 120.00195 * 2 1 4 4 H 1.07996 * 119.99900 * 191.60790 * 3 2 1 5 5 C 1.38950 * 119.99615 * 11.59898 * 3 2 1 6 6 N 1.31412 * 120.00277 * 23.39559 * 5 3 2 7 7 Si 1.86798 * 119.99850 * 203.39173 * 5 3 2 8 8 H 1.48497 * 109.47220 * 90.00148 * 7 5 3 9 9 H 1.48498 * 109.47353 * 210.00308 * 7 5 3 10 10 H 1.48509 * 109.47258 * 330.00303 * 7 5 3 11 11 C 1.34778 * 119.99918 * 179.97438 * 2 1 3 12 12 O 1.21291 * 120.00285 * 185.12330 * 11 2 1 13 13 C 1.50706 * 120.00017 * 5.13426 * 11 2 1 14 14 N 1.46893 * 115.54567 * 296.09654 * 13 11 2 15 15 C 1.52995 * 117.50188 * 81.76479 * 13 11 2 16 16 C 1.52996 * 60.03276 * 107.50074 * 15 13 11 17 17 H 1.09002 * 109.46824 * 176.72519 * 1 2 3 18 18 H 1.09002 * 109.47174 * 296.72764 * 1 2 3 19 19 H 1.09002 * 109.47048 * 56.72942 * 1 2 3 20 20 H 0.96999 * 120.00123 * 179.97438 * 6 5 3 21 21 H 1.00906 * 111.00495 * 330.93344 * 14 13 11 22 22 H 1.00899 * 111.00695 * 94.89210 * 14 13 11 23 23 H 1.08991 * 117.50210 * 215.00340 * 15 13 11 24 24 H 1.09008 * 117.50031 * 0.02562 * 15 13 11 25 25 H 1.09003 * 117.49708 * 107.50125 * 16 15 13 26 26 H 1.08996 * 117.50064 * 252.52138 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1506 1.1873 0.0000 4 1 3.2139 1.1968 -0.1882 5 6 1.4770 2.3783 0.2420 6 7 0.3419 2.3685 0.9040 7 14 2.1852 3.9934 -0.3738 8 1 1.6727 4.2699 -1.7398 9 1 1.7791 5.0921 0.5390 10 1 3.6671 3.9024 -0.4102 11 6 2.1389 -1.1672 0.0005 12 8 3.3482 -1.1694 0.0943 13 6 1.3899 -2.4698 -0.1157 14 7 0.4790 -2.7779 0.9947 15 6 0.9749 -2.9236 -1.5166 16 6 2.1104 -3.6425 -0.7856 17 1 -0.3633 -1.0260 -0.0587 18 1 -0.3633 0.4622 0.9179 19 1 -0.3633 0.5638 -0.8592 20 1 -0.1280 3.2000 1.0732 21 1 0.8038 -2.3624 1.8550 22 1 -0.4622 -2.4822 0.7832 23 1 0.0260 -3.4507 -1.6144 24 1 1.2439 -2.2802 -2.3544 25 1 1.9085 -4.6427 -0.4023 26 1 3.1262 -3.4716 -1.1420 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001160585166.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:27:56 Heat of formation + Delta-G solvation = 6.560488 kcal Electronic energy + Delta-G solvation = -11515.559481 eV Core-core repulsion = 9402.773183 eV Total energy + Delta-G solvation = -2112.786298 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 184.095 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.11625 -36.05398 -34.68050 -31.71239 -30.59295 -26.41413 -24.96894 -22.08302 -21.92840 -18.43619 -17.03484 -16.40045 -15.27204 -14.94248 -14.32185 -14.02420 -13.53380 -13.20480 -12.39600 -11.83362 -11.46212 -11.21308 -11.06618 -10.94356 -10.43959 -10.40861 -10.26664 -10.01968 -9.18284 -8.86378 -7.95736 -7.79875 -6.34749 -3.88343 3.10843 3.22318 3.27636 3.67106 4.05547 4.29352 4.66655 4.78133 5.08943 5.41366 5.57990 5.79238 5.96514 5.99729 6.26872 6.33288 6.59814 6.74655 7.21210 7.44747 7.54629 7.69637 8.04380 8.43495 9.12068 9.37689 9.92566 10.60453 Molecular weight = 184.10amu Principal moments of inertia in cm(-1) A = 0.065890 B = 0.012958 C = 0.011891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 424.851619 B = 2160.300176 C = 2354.113236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.437 5.437 3 C -0.312 4.312 4 H 0.103 0.897 5 C 0.032 3.968 6 N -0.872 5.872 7 Si 0.924 3.076 8 H -0.277 1.277 9 H -0.284 1.284 10 H -0.268 1.268 11 C 0.449 3.551 12 O -0.586 6.586 13 C 0.033 3.967 14 N -0.804 5.804 15 C -0.169 4.169 16 C -0.137 4.137 17 H 0.035 0.965 18 H 0.097 0.903 19 H 0.042 0.958 20 H 0.268 0.732 21 H 0.350 0.650 22 H 0.341 0.659 23 H 0.097 0.903 24 H 0.094 0.906 25 H 0.098 0.902 26 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.704 -4.821 -2.594 6.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.155 5.155 3 C -0.440 4.440 4 H 0.121 0.879 5 C -0.172 4.172 6 N -0.511 5.511 7 Si 0.751 3.249 8 H -0.203 1.203 9 H -0.210 1.210 10 H -0.193 1.193 11 C 0.235 3.765 12 O -0.470 6.470 13 C -0.064 4.064 14 N -0.337 5.337 15 C -0.207 4.207 16 C -0.176 4.176 17 H 0.053 0.947 18 H 0.115 0.885 19 H 0.061 0.939 20 H 0.078 0.922 21 H 0.163 0.837 22 H 0.157 0.843 23 H 0.115 0.885 24 H 0.113 0.887 25 H 0.116 0.884 26 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -3.083 -5.402 -2.607 6.744 hybrid contribution -0.148 1.939 -0.171 1.952 sum -3.231 -3.463 -2.778 5.490 Atomic orbital electron populations 1.22012 0.81239 0.97840 1.04665 1.43658 1.05542 1.04721 1.61532 1.19727 0.95268 0.82123 1.46875 0.87877 1.25251 0.96383 0.99735 0.95799 1.69962 1.17495 1.28147 1.35542 0.85955 0.79621 0.80681 0.78670 1.20329 1.20967 1.19290 1.19651 0.87781 0.83929 0.85167 1.90507 1.14213 1.86637 1.55658 1.21264 0.99743 0.93921 0.91453 1.58730 1.04581 1.66029 1.04323 1.23116 0.99894 1.03679 0.94050 1.22972 0.97056 0.95977 1.01571 0.94677 0.88482 0.93900 0.92162 0.83677 0.84311 0.88488 0.88747 0.88390 0.88360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.93 8.85 59.85 0.53 2.46 15 2 N -0.44 -11.29 3.03 -122.19 -0.37 -11.66 15 3 C -0.31 -8.82 9.39 -14.93 -0.14 -8.96 15 4 H 0.10 3.08 7.36 -52.49 -0.39 2.69 15 5 C 0.03 0.85 5.16 -17.47 -0.09 0.76 15 6 N -0.87 -22.94 10.52 55.50 0.58 -22.35 15 7 Si 0.92 20.69 29.61 -169.99 -5.03 15.66 15 8 H -0.28 -6.10 7.11 56.52 0.40 -5.70 15 9 H -0.28 -6.23 7.11 56.52 0.40 -5.83 15 10 H -0.27 -6.06 7.11 56.52 0.40 -5.66 15 11 C 0.45 11.30 6.93 -10.98 -0.08 11.23 15 12 O -0.59 -16.98 16.30 5.55 0.09 -16.89 15 13 C 0.03 0.64 1.76 -132.72 -0.23 0.41 15 14 N -0.80 -13.72 9.33 -0.17 0.00 -13.72 15 15 C -0.17 -2.81 10.00 -26.74 -0.27 -3.08 15 16 C -0.14 -2.40 9.98 -26.70 -0.27 -2.67 15 17 H 0.03 0.65 4.04 -51.93 -0.21 0.44 15 18 H 0.10 2.31 6.19 -51.93 -0.32 1.99 15 19 H 0.04 0.97 8.14 -51.93 -0.42 0.55 15 20 H 0.27 6.64 8.31 -40.82 -0.34 6.30 15 21 H 0.35 6.25 8.85 -39.29 -0.35 5.90 15 22 H 0.34 5.19 7.17 -39.29 -0.28 4.91 15 23 H 0.10 1.37 8.14 -51.93 -0.42 0.95 15 24 H 0.09 1.61 8.14 -51.92 -0.42 1.19 15 25 H 0.10 1.52 8.14 -51.93 -0.42 1.10 15 26 H 0.10 1.82 7.97 -51.93 -0.41 1.40 15 LS Contribution 224.63 15.07 3.39 3.39 Total: -1.00 -30.53 224.63 -4.68 -35.21 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: -2.79 Total: 10.22 kcal Atomic # 6 Polarization: 0.69 SS G_CDS: -0.54 Total: 0.15 kcal Atomic # 7 Polarization: -47.95 SS G_CDS: 0.21 Total: -47.73 kcal Atomic # 8 Polarization: -16.98 SS G_CDS: 0.09 Total: -16.89 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.03 Total: 15.66 kcal Total LS contribution 3.39 Total: 3.39 kcal Total: -30.53 -4.68 -35.21 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160585166.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.769 kcal (2) G-P(sol) polarization free energy of solvation -30.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.208 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds