Wall clock time and date at job start Sun Mar 29 2020 21:31:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.47171 * 2 1 4 4 N 1.46903 * 109.46974 * 240.00179 * 2 1 3 5 5 C 1.52998 * 109.47175 * 120.00058 * 2 1 3 6 6 N 1.46902 * 109.47042 * 175.00161 * 5 2 1 7 7 C 1.47961 * 111.00005 * 169.99741 * 6 5 2 8 8 C 1.53934 * 86.17939 * 137.58072 * 7 6 5 9 9 C 1.50703 * 113.73399 * 221.81705 * 8 7 6 10 10 H 1.07999 * 119.99920 * 358.09577 * 9 8 7 11 11 C 1.37877 * 119.99669 * 178.10223 * 9 8 7 12 12 N 1.31510 * 120.00506 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 119.99624 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47293 * 359.97438 * 13 11 9 15 15 H 1.48498 * 109.47387 * 119.99775 * 13 11 9 16 16 H 1.48498 * 109.47096 * 240.00236 * 13 11 9 17 17 C 1.48296 * 111.00409 * 269.35042 * 6 5 2 18 18 H 1.09000 * 109.46757 * 299.99900 * 1 2 3 19 19 H 1.08997 * 109.47225 * 59.99910 * 1 2 3 20 20 H 1.09001 * 109.47171 * 180.02562 * 1 2 3 21 21 H 1.00900 * 110.99604 * 176.04519 * 4 2 1 22 22 H 1.00900 * 110.99608 * 299.99689 * 4 2 1 23 23 H 1.09001 * 109.47203 * 54.99872 * 5 2 1 24 24 H 1.09004 * 109.46772 * 295.00132 * 5 2 1 25 25 H 1.09007 * 113.75652 * 23.26342 * 7 6 5 26 26 H 1.08993 * 113.76177 * 251.90248 * 7 6 5 27 27 H 1.09002 * 113.73279 * 90.64057 * 8 7 6 28 28 H 0.96995 * 120.00309 * 180.02562 * 12 11 9 29 29 H 1.09001 * 113.86054 * 108.14174 * 17 6 5 30 30 H 1.09000 * 113.76062 * 336.68481 * 17 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6925 -1.1995 5 6 2.0400 -0.7213 1.2492 6 7 3.5041 -0.8266 1.1904 7 6 4.0539 -1.2999 2.4799 8 6 4.9809 -2.1954 1.6384 9 6 5.1418 -3.5890 2.1891 10 1 4.6527 -3.8648 3.1117 11 6 5.9134 -4.5117 1.5151 12 7 6.5094 -4.1756 0.3920 13 14 6.1134 -6.2388 2.1981 14 1 5.3487 -6.3618 3.4652 15 1 5.6001 -7.2236 1.2122 16 1 7.5507 -6.5040 2.4604 17 6 3.9201 -2.0866 0.5282 18 1 -0.3633 0.5138 0.8900 19 1 -0.3633 0.5138 -0.8899 20 1 -0.3633 -1.0277 0.0005 21 1 3.0262 -0.6500 -1.2559 22 1 1.6961 -1.6479 -1.2227 23 1 1.6054 -1.7198 1.2951 24 1 1.7516 -0.1583 2.1369 25 1 3.3376 -1.8553 3.0854 26 1 4.5802 -0.5288 3.0424 27 1 5.9316 -1.7267 1.3843 28 1 7.0519 -4.8249 -0.0823 29 1 4.3397 -1.9436 -0.4676 30 1 3.1649 -2.8717 0.5639 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001204748714.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:31:06 Heat of formation + Delta-G solvation = 0.634300 kcal Electronic energy + Delta-G solvation = -11484.990549 eV Core-core repulsion = 9507.780366 eV Total energy + Delta-G solvation = -1977.210182 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.67117 -36.88057 -34.57946 -30.84259 -29.84686 -27.33307 -26.67309 -24.11426 -21.46346 -20.43242 -18.62261 -17.35038 -16.67518 -16.16251 -15.95946 -15.56424 -14.99861 -14.11844 -13.88203 -13.48047 -13.20408 -12.96609 -12.80574 -12.67306 -12.37587 -12.21399 -11.88969 -11.60339 -11.09723 -10.93577 -10.55432 -9.84272 -9.39040 -8.17876 -6.29518 1.38922 1.41250 1.52240 2.39727 3.11160 3.15515 3.68634 4.08483 4.14100 4.21652 4.43426 4.47874 4.57475 4.68081 4.77481 4.83495 4.95504 4.97333 5.16955 5.23157 5.31650 5.47564 5.60245 5.82204 6.26277 6.28548 6.33926 6.54709 6.78942 7.39092 8.91380 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.066097 B = 0.009665 C = 0.009420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 423.518988 B = 2896.270081 C = 2971.598307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.097 3.903 3 H 0.077 0.923 4 N -0.845 5.845 5 C -0.013 4.013 6 N -0.488 5.488 7 C 0.011 3.989 8 C 0.018 3.982 9 C -0.536 4.536 10 H 0.056 0.944 11 C 0.016 3.984 12 N -0.918 5.918 13 Si 0.956 3.044 14 H -0.266 1.266 15 H -0.279 1.279 16 H -0.279 1.279 17 C 0.028 3.972 18 H 0.072 0.928 19 H 0.066 0.934 20 H 0.051 0.949 21 H 0.341 0.659 22 H 0.334 0.666 23 H 0.032 0.968 24 H 0.078 0.922 25 H 0.059 0.941 26 H 0.078 0.922 27 H 0.025 0.975 28 H 0.263 0.737 29 H 0.058 0.942 30 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.087 4.454 0.976 10.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.016 4.016 3 H 0.095 0.905 4 N -0.374 5.374 5 C -0.144 4.144 6 N -0.211 5.211 7 C -0.118 4.118 8 C -0.001 4.001 9 C -0.574 4.574 10 H 0.074 0.926 11 C -0.184 4.184 12 N -0.557 5.557 13 Si 0.782 3.218 14 H -0.190 1.190 15 H -0.205 1.205 16 H -0.205 1.205 17 C -0.102 4.102 18 H 0.091 0.909 19 H 0.085 0.915 20 H 0.070 0.930 21 H 0.155 0.845 22 H 0.146 0.854 23 H 0.050 0.950 24 H 0.097 0.903 25 H 0.077 0.923 26 H 0.096 0.904 27 H 0.044 0.956 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -9.216 5.594 0.158 10.783 hybrid contribution 0.586 -2.356 1.181 2.700 sum -8.631 3.238 1.339 9.315 Atomic orbital electron populations 1.21733 0.92912 1.02039 1.02654 1.21407 0.95818 0.97762 0.86570 0.90509 1.59123 1.16984 1.20915 1.40357 1.23526 0.89923 0.99805 1.01124 1.68431 1.10377 1.32366 1.09889 1.23920 0.97851 0.97382 0.92631 1.20310 0.93211 0.93906 0.92646 1.21449 1.30518 0.96948 1.08467 0.92612 1.25797 0.94770 1.02645 0.95150 1.70079 1.32509 1.36141 1.16941 0.85536 0.77953 0.79763 0.78591 1.19048 1.20526 1.20513 1.23884 0.98286 0.89049 0.98936 0.90924 0.91522 0.93026 0.84507 0.85417 0.94968 0.90321 0.92295 0.90399 0.95635 0.92799 0.92358 0.93637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.99 9.49 71.98 0.68 -2.31 16 2 C 0.10 2.71 3.70 44.92 0.17 2.88 16 3 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 4 N -0.84 -25.70 8.64 -168.67 -1.46 -27.16 16 5 C -0.01 -0.42 4.60 86.30 0.40 -0.02 16 6 N -0.49 -18.94 5.84 -907.02 -5.30 -24.23 16 7 C 0.01 0.45 7.50 86.41 0.65 1.10 16 8 C 0.02 0.93 3.60 -10.89 -0.04 0.89 16 9 C -0.54 -29.23 8.77 25.60 0.22 -29.00 16 10 H 0.06 2.98 7.81 -2.91 -0.02 2.96 16 11 C 0.02 0.88 5.46 84.66 0.46 1.34 16 12 N -0.92 -53.13 13.29 21.45 0.28 -52.84 16 13 Si 0.96 42.97 29.54 68.60 2.03 45.00 16 14 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 15 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 16 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 17 C 0.03 1.23 6.01 86.34 0.52 1.75 16 18 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 19 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 20 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 21 H 0.34 11.61 6.75 -89.69 -0.61 11.00 16 22 H 0.33 10.01 8.97 -89.69 -0.80 9.20 16 23 H 0.03 1.07 7.38 -2.39 -0.02 1.05 16 24 H 0.08 2.27 8.08 -2.39 -0.02 2.25 16 25 H 0.06 2.37 7.88 -2.38 -0.02 2.35 16 26 H 0.08 3.01 8.14 -2.39 -0.02 2.99 16 27 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 29 H 0.06 2.70 7.26 -2.39 -0.02 2.69 16 30 H 0.05 2.08 7.43 -2.39 -0.02 2.06 16 Total: -1.00 -57.35 246.47 -1.67 -59.02 By element: Atomic # 1 Polarization: 23.87 SS G_CDS: -0.29 Total: 23.58 kcal Atomic # 6 Polarization: -26.44 SS G_CDS: 3.06 Total: -23.37 kcal Atomic # 7 Polarization: -97.76 SS G_CDS: -6.47 Total: -104.23 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 45.00 kcal Total: -57.35 -1.67 -59.02 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204748714.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.658 kcal (2) G-P(sol) polarization free energy of solvation -57.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.024 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds