Wall clock time and date at job start Sun Mar 29 2020 21:42:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46898 * 109.47049 * 2 1 4 4 C 1.47480 * 111.00405 * 265.97434 * 3 2 1 5 5 C 1.53515 * 87.93275 * 221.29694 * 4 3 2 6 6 O 1.42902 * 114.17149 * 139.66480 * 5 4 3 7 7 C 1.42902 * 113.99606 * 116.15765 * 6 5 4 8 8 C 1.50699 * 109.46878 * 180.02562 * 7 6 5 9 9 H 1.07996 * 120.00093 * 0.02562 * 8 7 6 10 10 C 1.37885 * 119.99771 * 179.97438 * 8 7 6 11 11 N 1.31514 * 119.99754 * 180.02562 * 10 8 7 12 12 Si 1.86791 * 119.99918 * 0.02562 * 10 8 7 13 13 H 1.48495 * 109.47346 * 89.99978 * 12 10 8 14 14 H 1.48508 * 109.46766 * 209.99537 * 12 10 8 15 15 H 1.48500 * 109.47440 * 329.99692 * 12 10 8 16 16 C 1.47486 * 110.99952 * 170.00069 * 3 2 1 17 17 H 1.09001 * 109.46851 * 179.97438 * 1 2 3 18 18 H 1.09001 * 109.47065 * 299.99843 * 1 2 3 19 19 H 1.09005 * 109.47224 * 59.99614 * 1 2 3 20 20 H 1.09001 * 109.47065 * 240.00156 * 2 1 3 21 21 H 1.09005 * 109.47224 * 120.00386 * 2 1 3 22 22 H 1.09005 * 113.47310 * 336.06042 * 4 3 2 23 23 H 1.08990 * 113.48150 * 106.52863 * 4 3 2 24 24 H 1.08998 * 114.34501 * 272.36177 * 5 4 3 25 25 H 1.08996 * 109.47303 * 300.00380 * 7 6 5 26 26 H 1.09000 * 109.46862 * 60.00789 * 7 6 5 27 27 H 0.96995 * 119.99720 * 180.02562 * 11 10 8 28 28 H 1.09005 * 113.47586 * 253.47470 * 16 3 2 29 29 H 1.08996 * 113.47223 * 23.93957 * 16 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 2.2870 1.8511 -1.3734 5 6 3.5605 2.5211 -0.8386 6 8 4.6921 2.4009 -1.7030 7 6 5.1696 3.6478 -2.2121 8 6 6.3573 3.4032 -3.1069 9 1 6.7116 2.3963 -3.2708 10 6 6.9908 4.4650 -3.7173 11 7 8.0270 4.2515 -4.4986 12 14 6.3774 6.2065 -3.4343 13 1 7.0705 6.7905 -2.2581 14 1 6.6603 7.0322 -4.6358 15 1 4.9138 6.1814 -3.1844 16 6 3.4743 1.4313 0.2391 17 1 -0.3633 -1.0277 -0.0005 18 1 -0.3633 0.5138 0.8900 19 1 -0.3634 0.5139 -0.8900 20 1 1.8934 -0.5138 -0.8900 21 1 1.8934 -0.5139 0.8900 22 1 2.4846 1.0415 -2.0760 23 1 1.5462 2.5598 -1.7434 24 1 3.4117 3.5334 -0.4627 25 1 4.3788 4.1339 -2.7833 26 1 5.4656 4.2896 -1.3823 27 1 8.4729 4.9985 -4.9276 28 1 3.7395 1.7842 1.2357 29 1 3.9886 0.5097 -0.0332 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205603726.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:40 Heat of formation + Delta-G solvation = -11.970371 kcal Electronic energy + Delta-G solvation = -11215.554259 eV Core-core repulsion = 9140.078835 eV Total energy + Delta-G solvation = -2075.475424 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.92045 -36.17804 -32.77086 -32.09559 -28.19673 -26.21581 -25.64117 -22.11757 -21.52780 -19.75521 -16.94363 -16.25980 -15.78789 -15.24679 -14.56729 -13.89652 -13.59395 -13.47780 -12.73903 -12.47120 -12.22114 -11.87240 -11.68363 -11.16500 -11.01600 -10.83352 -10.49455 -10.22183 -9.90039 -9.25176 -8.91728 -8.82155 -8.46873 -6.14367 -4.14011 3.23628 3.30748 3.32187 4.06646 4.33447 4.58437 4.76907 4.99677 5.17334 5.20246 5.35428 5.39964 5.56391 5.61991 5.81124 5.83653 5.89698 5.98462 6.09715 6.19814 6.39666 6.59786 6.96386 7.13931 7.55985 7.97523 8.61604 8.96064 9.44434 10.98598 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.088898 B = 0.007801 C = 0.007559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 314.891002 B = 3588.367476 C = 3703.353848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.015 3.985 3 N -0.474 5.474 4 C -0.021 4.021 5 C 0.059 3.941 6 O -0.365 6.365 7 C 0.167 3.833 8 C -0.522 4.522 9 H 0.082 0.918 10 C 0.073 3.927 11 N -0.895 5.895 12 Si 0.876 3.124 13 H -0.273 1.273 14 H -0.282 1.282 15 H -0.265 1.265 16 C -0.004 4.004 17 H 0.055 0.945 18 H 0.059 0.941 19 H 0.053 0.947 20 H 0.046 0.954 21 H 0.070 0.930 22 H 0.077 0.923 23 H 0.082 0.918 24 H 0.091 0.909 25 H 0.005 0.995 26 H 0.001 0.999 27 H 0.267 0.733 28 H 0.085 0.915 29 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.125 -4.187 8.114 15.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.113 4.113 3 N -0.198 5.198 4 C -0.150 4.150 5 C -0.001 4.001 6 O -0.283 6.283 7 C 0.092 3.908 8 C -0.560 4.560 9 H 0.100 0.900 10 C -0.129 4.129 11 N -0.533 5.533 12 Si 0.703 3.297 13 H -0.199 1.199 14 H -0.207 1.207 15 H -0.190 1.190 16 C -0.133 4.133 17 H 0.074 0.926 18 H 0.079 0.921 19 H 0.072 0.928 20 H 0.064 0.936 21 H 0.088 0.912 22 H 0.096 0.904 23 H 0.100 0.900 24 H 0.109 0.891 25 H 0.023 0.977 26 H 0.019 0.981 27 H 0.077 0.923 28 H 0.104 0.896 29 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -12.372 -3.943 8.377 15.453 hybrid contribution 0.161 0.613 -0.403 0.751 sum -12.211 -3.331 7.974 14.960 Atomic orbital electron populations 1.21652 0.94772 1.01055 1.02387 1.22632 0.96821 0.90632 1.01253 1.68799 1.14298 1.19294 1.17423 1.24526 0.98219 1.00594 0.91615 1.23522 0.87149 0.98084 0.91362 1.87969 1.44451 1.32848 1.63002 1.20692 0.94735 0.82121 0.93226 1.20891 1.11506 0.96546 1.27049 0.89989 1.24773 0.94623 0.98941 0.94606 1.69874 1.20705 1.31923 1.30793 0.86839 0.79885 0.84708 0.78275 1.19870 1.20741 1.19004 1.24150 0.89096 0.99834 1.00218 0.92640 0.92144 0.92758 0.93558 0.91156 0.90447 0.89993 0.89086 0.97694 0.98099 0.92310 0.89616 0.90531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 10.24 37.16 0.38 -1.08 15 2 C 0.02 0.19 5.54 -3.82 -0.02 0.17 15 3 N -0.47 -6.86 6.33 -244.63 -1.55 -8.41 15 4 C -0.02 -0.32 7.55 -7.54 -0.06 -0.38 15 5 C 0.06 1.06 4.66 -26.20 -0.12 0.94 15 6 O -0.37 -8.49 10.38 -35.23 -0.37 -8.85 15 7 C 0.17 4.24 4.60 36.01 0.17 4.41 15 8 C -0.52 -15.52 9.99 -34.44 -0.34 -15.86 15 9 H 0.08 2.66 8.06 -52.49 -0.42 2.24 15 10 C 0.07 2.13 5.47 -17.82 -0.10 2.03 15 11 N -0.89 -27.57 13.96 55.43 0.77 -26.80 15 12 Si 0.88 21.31 27.47 -169.99 -4.67 16.65 15 13 H -0.27 -6.48 7.11 56.52 0.40 -6.07 15 14 H -0.28 -6.72 7.11 56.52 0.40 -6.32 15 15 H -0.27 -6.17 6.54 56.52 0.37 -5.80 15 16 C 0.00 -0.06 7.52 -7.53 -0.06 -0.12 15 17 H 0.05 0.48 8.14 -51.93 -0.42 0.06 15 18 H 0.06 0.62 8.14 -51.93 -0.42 0.20 15 19 H 0.05 0.58 8.14 -51.93 -0.42 0.16 15 20 H 0.05 0.57 7.30 -51.93 -0.38 0.19 15 21 H 0.07 0.78 8.08 -51.93 -0.42 0.36 15 22 H 0.08 1.24 7.42 -51.93 -0.39 0.86 15 23 H 0.08 1.21 8.14 -51.93 -0.42 0.79 15 24 H 0.09 1.57 7.88 -51.93 -0.41 1.16 15 25 H 0.01 0.13 7.20 -51.93 -0.37 -0.24 15 26 H 0.00 0.03 7.57 -51.93 -0.39 -0.36 15 27 H 0.27 7.60 8.31 -40.82 -0.34 7.26 15 28 H 0.09 1.19 8.14 -51.93 -0.42 0.77 15 29 H 0.08 1.18 7.91 -51.93 -0.41 0.77 15 LS Contribution 244.89 15.07 3.69 3.69 Total: -1.00 -30.85 244.89 -6.75 -37.59 By element: Atomic # 1 Polarization: 0.50 SS G_CDS: -4.47 Total: -3.98 kcal Atomic # 6 Polarization: -9.74 SS G_CDS: -0.15 Total: -9.90 kcal Atomic # 7 Polarization: -34.43 SS G_CDS: -0.78 Total: -35.20 kcal Atomic # 8 Polarization: -8.49 SS G_CDS: -0.37 Total: -8.85 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.67 Total: 16.65 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -30.85 -6.75 -37.59 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205603726.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.624 kcal (2) G-P(sol) polarization free energy of solvation -30.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds