Wall clock time and date at job start Sun Mar 29 2020 21:46:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99650 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99643 * 3 2 1 7 7 C 1.37875 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.47184 * 179.97438 * 9 7 2 11 11 O 1.42895 * 109.47036 * 179.97438 * 10 9 7 12 12 C 1.42901 * 113.99948 * 179.97438 * 11 10 9 13 13 H 1.08997 * 112.85021 * 341.19741 * 12 11 10 14 14 C 1.53783 * 113.61493 * 112.49913 * 12 11 10 15 15 C 1.53779 * 87.08195 * 139.98126 * 14 12 11 16 16 H 1.09002 * 113.61586 * 89.11422 * 15 14 12 17 17 O 1.42898 * 113.61648 * 220.01845 * 15 14 12 18 18 C 1.53778 * 113.61546 * 209.99826 * 12 11 10 19 19 H 0.97001 * 119.99934 * 179.97438 * 1 2 3 20 20 H 1.09001 * 109.46665 * 299.99501 * 9 7 2 21 21 H 1.08993 * 109.47304 * 59.99945 * 9 7 2 22 22 H 1.09001 * 109.47002 * 299.99404 * 10 9 7 23 23 H 1.09001 * 109.46801 * 59.99558 * 10 9 7 24 24 H 1.09001 * 113.61769 * 254.52952 * 14 12 11 25 25 H 1.09001 * 113.61251 * 25.43236 * 14 12 11 26 26 H 0.96700 * 114.00431 * 277.50070 * 17 15 14 27 27 H 1.09002 * 113.61528 * 334.56698 * 18 12 11 28 28 H 1.08995 * 113.61555 * 105.38606 * 18 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1029 1.6964 -1.2125 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 8 1.5310 -4.8996 0.0011 12 6 2.3709 -6.0557 0.0006 13 1 3.3887 -5.8392 -0.3239 14 6 2.2978 -6.8709 1.3025 15 6 2.3421 -8.1316 0.4231 16 1 3.3525 -8.4836 0.2150 17 8 1.4716 -9.1727 0.8707 18 6 1.7453 -7.2713 -0.7033 19 1 -0.4850 -0.8401 -0.0004 20 1 0.6242 -2.5567 0.8904 21 1 0.6248 -2.5571 -0.8896 22 1 2.8720 -3.6043 -0.8895 23 1 2.8721 -3.6042 0.8905 24 1 3.1731 -6.7531 1.9413 25 1 1.3589 -6.7479 1.8425 26 1 1.8414 -9.7172 1.5791 27 1 0.6554 -7.2579 -0.7118 28 1 2.1737 -7.4760 -1.6845 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001217915522.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:12 Heat of formation + Delta-G solvation = -92.129195 kcal Electronic energy + Delta-G solvation = -11143.022543 eV Core-core repulsion = 8966.352510 eV Total energy + Delta-G solvation = -2176.670033 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.40342 -36.71223 -34.43593 -33.24960 -29.48677 -25.72685 -24.49620 -23.39934 -21.29958 -19.64829 -17.91497 -16.75130 -15.85724 -15.57354 -14.94244 -14.01879 -13.72225 -13.27359 -12.84847 -12.40497 -12.22415 -11.78486 -11.44344 -10.97888 -10.79834 -10.68614 -10.29759 -10.12165 -9.93801 -9.70038 -8.89730 -8.65366 -8.33401 -6.39080 -4.08825 3.42824 3.45367 3.64219 3.92603 4.44106 4.56945 4.59748 4.73065 4.83470 4.99848 5.30807 5.39528 5.70041 5.79801 5.98739 6.05986 6.14564 6.16225 6.31415 6.72010 7.28225 7.50239 7.53220 7.86423 8.18606 8.42245 8.84434 9.64308 11.02419 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.117691 B = 0.006480 C = 0.006363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 237.854130 B = 4320.102429 C = 4399.138964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.016 3.984 3 Si 1.072 2.928 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.287 1.287 7 C -0.606 4.606 8 H 0.050 0.950 9 C 0.011 3.989 10 C 0.074 3.926 11 O -0.376 6.376 12 C 0.065 3.935 13 H 0.084 0.916 14 C -0.186 4.186 15 C 0.076 3.924 16 H 0.082 0.918 17 O -0.558 6.558 18 C -0.128 4.128 19 H 0.271 0.729 20 H 0.015 0.985 21 H 0.016 0.984 22 H 0.038 0.962 23 H 0.037 0.963 24 H 0.068 0.932 25 H 0.097 0.903 26 H 0.375 0.625 27 H 0.098 0.902 28 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.708 -13.799 1.180 15.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.188 4.188 3 Si 0.900 3.100 4 H -0.206 1.206 5 H -0.214 1.214 6 H -0.214 1.214 7 C -0.644 4.644 8 H 0.068 0.932 9 C -0.026 4.026 10 C -0.002 4.002 11 O -0.295 6.295 12 C 0.006 3.994 13 H 0.102 0.898 14 C -0.224 4.224 15 C 0.017 3.983 16 H 0.100 0.900 17 O -0.363 6.363 18 C -0.166 4.166 19 H 0.081 0.919 20 H 0.034 0.966 21 H 0.034 0.966 22 H 0.056 0.944 23 H 0.055 0.945 24 H 0.086 0.914 25 H 0.115 0.885 26 H 0.222 0.778 27 H 0.116 0.884 28 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 5.916 -11.888 0.717 13.298 hybrid contribution 0.960 -1.914 0.468 2.192 sum 6.876 -13.802 1.185 15.465 Atomic orbital electron populations 1.70757 1.06881 1.30861 1.46000 1.25887 0.96548 1.02723 0.93631 0.83501 0.74839 0.75122 0.76515 1.20648 1.21385 1.21391 1.21887 0.94256 0.91589 1.56704 0.93201 1.19211 0.94938 0.91276 0.97175 1.22775 0.96054 0.82949 0.98420 1.87986 1.33525 1.13685 1.94302 1.23193 0.94647 0.86003 0.95570 0.89782 1.24217 1.03402 0.96446 0.98330 1.23087 0.93168 0.85826 0.96240 0.90043 1.86542 1.45209 1.46804 1.57737 1.23318 1.03078 0.93135 0.97032 0.91861 0.96627 0.96609 0.94392 0.94467 0.91371 0.88472 0.77785 0.88355 0.90631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.56 13.65 55.43 0.76 -27.81 15 2 C 0.02 0.48 5.46 -17.82 -0.10 0.39 15 3 Si 1.07 25.50 29.90 -169.99 -5.08 20.42 15 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 15 5 H -0.29 -6.48 7.11 56.52 0.40 -6.08 15 6 H -0.29 -6.48 7.11 56.52 0.40 -6.08 15 7 C -0.61 -17.77 9.11 -34.44 -0.31 -18.08 15 8 H 0.05 1.41 7.74 -52.48 -0.41 1.00 15 9 C 0.01 0.30 4.65 -27.88 -0.13 0.17 15 10 C 0.07 1.66 5.71 37.16 0.21 1.88 15 11 O -0.38 -7.87 10.35 -35.23 -0.36 -8.23 15 12 C 0.06 1.02 4.31 -25.92 -0.11 0.91 15 13 H 0.08 1.18 7.87 -51.93 -0.41 0.77 15 14 C -0.19 -2.52 7.74 -25.92 -0.20 -2.72 15 15 C 0.08 0.89 5.21 -25.92 -0.14 0.75 15 16 H 0.08 0.75 8.14 -51.93 -0.42 0.33 15 17 O -0.56 -6.55 13.67 -35.23 -0.48 -7.04 15 18 C -0.13 -1.77 7.74 -25.92 -0.20 -1.97 15 19 H 0.27 8.54 7.22 -40.82 -0.29 8.25 15 20 H 0.02 0.45 8.01 -51.93 -0.42 0.03 15 21 H 0.02 0.45 8.01 -51.93 -0.42 0.03 15 22 H 0.04 0.82 8.14 -51.93 -0.42 0.40 15 23 H 0.04 0.81 8.14 -51.93 -0.42 0.38 15 24 H 0.07 0.81 8.14 -51.93 -0.42 0.39 15 25 H 0.10 1.48 8.14 -51.93 -0.42 1.05 15 26 H 0.38 2.56 9.12 45.56 0.42 2.97 15 27 H 0.10 1.52 8.14 -51.93 -0.42 1.10 15 28 H 0.08 0.90 8.14 -51.93 -0.42 0.48 15 LS Contribution 243.81 15.07 3.67 3.67 Total: -1.00 -33.16 243.81 -5.76 -38.91 By element: Atomic # 1 Polarization: 2.04 SS G_CDS: -3.28 Total: -1.24 kcal Atomic # 6 Polarization: -17.71 SS G_CDS: -0.98 Total: -18.68 kcal Atomic # 7 Polarization: -28.56 SS G_CDS: 0.76 Total: -27.81 kcal Atomic # 8 Polarization: -14.42 SS G_CDS: -0.85 Total: -15.27 kcal Atomic # 14 Polarization: 25.50 SS G_CDS: -5.08 Total: 20.42 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -33.16 -5.76 -38.91 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001217915522.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.215 kcal (2) G-P(sol) polarization free energy of solvation -33.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds