Wall clock time and date at job start Sun Mar 29 2020 21:52:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.33084 * 1 3 3 C 1.47273 * 120.00518 * 2 1 4 4 C 1.40203 * 119.90127 * 359.97438 * 3 2 1 5 5 C 1.36140 * 120.09769 * 180.02562 * 4 3 2 6 6 C 1.41013 * 119.89876 * 359.97438 * 5 4 3 7 7 C 1.40938 * 120.09310 * 180.27714 * 6 5 4 8 8 H 1.08000 * 119.99778 * 153.31618 * 7 6 5 9 9 C 1.40022 * 119.99819 * 333.31327 * 7 6 5 10 10 N 1.30791 * 120.00270 * 343.94373 * 9 7 6 11 11 Si 1.86803 * 119.99798 * 163.94023 * 9 7 6 12 12 H 1.48503 * 109.47074 * 59.99975 * 11 9 7 13 13 H 1.48505 * 109.47288 * 179.97438 * 11 9 7 14 14 H 1.48496 * 109.47168 * 300.00117 * 11 9 7 15 15 C 1.40966 * 119.81146 * 0.02562 * 6 5 4 16 16 C 1.50700 * 120.05086 * 180.02562 * 15 6 5 17 17 C 1.36179 * 119.89932 * 359.97438 * 15 6 5 18 18 H 1.08003 * 120.00409 * 179.97438 * 1 2 3 19 19 H 1.08002 * 119.99732 * 0.02562 * 1 2 3 20 20 H 1.08004 * 119.99228 * 179.97438 * 2 1 3 21 21 H 1.08005 * 119.95593 * 0.02562 * 4 3 2 22 22 H 1.08003 * 120.05367 * 180.02562 * 5 4 3 23 23 H 0.97007 * 119.99775 * 179.97438 * 10 9 7 24 24 H 1.08998 * 109.47536 * 89.99315 * 16 15 6 25 25 H 1.08994 * 109.46907 * 209.99610 * 16 15 6 26 26 H 1.09003 * 109.46567 * 329.99440 * 16 15 6 27 27 H 1.07994 * 119.94973 * 179.97438 * 17 15 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3308 0.0000 0.0000 3 6 2.0673 1.2754 0.0000 4 6 1.3643 2.4884 -0.0005 5 6 2.0411 3.6697 -0.0011 6 6 3.4512 3.6719 -0.0005 7 6 4.1560 4.8924 0.0048 8 1 5.1495 4.9404 0.4254 9 6 3.5679 6.0427 -0.5352 10 7 2.5229 5.9386 -1.3147 11 14 4.2761 7.7261 -0.1422 12 1 5.6850 7.7912 -0.6071 13 1 3.4788 8.7719 -0.8322 14 1 4.2278 7.9532 1.3244 15 6 4.1539 2.4499 0.0000 16 6 5.6609 2.4459 0.0012 17 6 3.4689 1.2729 0.0005 18 1 -0.5401 -0.9353 -0.0004 19 1 -0.5400 0.9354 -0.0004 20 1 1.8707 -0.9354 0.0004 21 1 0.2843 2.4858 -0.0005 22 1 1.4988 4.6037 -0.0011 23 1 2.1154 6.7356 -1.6886 24 1 6.0235 2.4451 1.0291 25 1 6.0223 1.5550 -0.5123 26 1 6.0269 3.3350 -0.5125 27 1 4.0065 0.3362 0.0005 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240832046.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:56 Heat of formation + Delta-G solvation = 6.989381 kcal Electronic energy + Delta-G solvation = -10848.514819 eV Core-core repulsion = 8956.140331 eV Total energy + Delta-G solvation = -1892.374488 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 188.090 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.75387 -36.10188 -34.56136 -32.48807 -30.76239 -28.11500 -26.28983 -23.23201 -22.42763 -19.81718 -19.03265 -17.40715 -16.40119 -15.90027 -15.36020 -14.55224 -14.33190 -14.08551 -13.68744 -13.38171 -12.93338 -12.79534 -12.76747 -12.57052 -12.30651 -11.93509 -11.31141 -11.17779 -11.14589 -10.54162 -9.27361 -8.84470 -8.62172 -6.28406 0.53264 1.18203 1.37083 1.41620 1.50232 1.99703 2.19380 2.84616 3.75702 4.23616 4.34721 4.51872 4.59953 4.72750 4.96382 5.01894 5.04311 5.14592 5.26154 5.40209 5.45577 5.74228 5.78462 5.84142 6.10474 6.17012 6.36894 6.41199 6.67587 6.90872 7.05140 8.29137 Molecular weight = 188.09amu Principal moments of inertia in cm(-1) A = 0.052235 B = 0.011595 C = 0.009743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 535.911623 B = 2414.337861 C = 2873.239298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.087 4.087 3 C -0.210 4.210 4 C -0.099 4.099 5 C -0.195 4.195 6 C 0.085 3.915 7 C -0.481 4.481 8 H 0.085 0.915 9 C 0.032 3.968 10 N -0.821 5.821 11 Si 0.984 3.016 12 H -0.256 1.256 13 H -0.269 1.269 14 H -0.260 1.260 15 C -0.219 4.219 16 C -0.079 4.079 17 C -0.078 4.078 18 H 0.119 0.881 19 H 0.084 0.916 20 H 0.122 0.878 21 H 0.104 0.896 22 H 0.099 0.901 23 H 0.289 0.711 24 H 0.055 0.945 25 H 0.062 0.938 26 H 0.050 0.950 27 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.125 -2.768 1.642 3.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.271 4.271 2 C -0.105 4.105 3 C -0.211 4.211 4 C -0.117 4.117 5 C -0.214 4.214 6 C 0.082 3.918 7 C -0.509 4.509 8 H 0.103 0.897 9 C -0.183 4.183 10 N -0.447 5.447 11 Si 0.804 3.196 12 H -0.180 1.180 13 H -0.194 1.194 14 H -0.184 1.184 15 C -0.220 4.220 16 C -0.136 4.136 17 C -0.096 4.096 18 H 0.137 0.863 19 H 0.102 0.898 20 H 0.140 0.860 21 H 0.122 0.878 22 H 0.117 0.883 23 H 0.100 0.900 24 H 0.074 0.926 25 H 0.081 0.919 26 H 0.069 0.931 27 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 0.971 -2.626 1.481 3.167 hybrid contribution -0.052 0.887 -0.047 0.890 sum 0.919 -1.739 1.435 2.435 Atomic orbital electron populations 1.24271 0.95383 1.01719 1.05746 1.21829 0.95374 0.95339 0.97987 1.18854 0.93322 0.92964 1.15975 1.20832 0.98239 0.92742 0.99903 1.20972 0.94966 0.96735 1.08777 1.17974 0.92302 0.93117 0.88369 1.19842 1.02808 0.93503 1.34769 0.89673 1.26875 0.94373 1.05201 0.91899 1.69875 1.19489 1.33332 1.21962 0.85226 0.79374 0.75355 0.79646 1.18015 1.19356 1.18445 1.19937 0.96470 0.92952 1.12623 1.20390 0.91222 1.01266 1.00726 1.20680 0.93235 0.96828 0.98845 0.86326 0.89751 0.85973 0.87803 0.88348 0.90022 0.92640 0.91896 0.93067 0.86291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -7.73 14.17 66.66 0.94 -6.79 15 2 C -0.09 -3.22 9.90 23.49 0.23 -2.99 15 3 C -0.21 -9.55 5.89 -19.96 -0.12 -9.67 15 4 C -0.10 -4.88 9.33 22.26 0.21 -4.67 15 5 C -0.20 -10.64 8.61 22.46 0.19 -10.45 15 6 C 0.08 4.62 5.56 -21.27 -0.12 4.50 15 7 C -0.48 -25.48 8.08 23.36 0.19 -25.29 15 8 H 0.09 4.27 6.89 -2.91 -0.02 4.25 15 9 C 0.03 1.61 5.15 85.28 0.44 2.05 15 10 N -0.82 -43.18 10.97 21.84 0.24 -42.94 15 11 Si 0.98 37.63 29.59 68.60 2.03 39.66 15 12 H -0.26 -9.38 7.11 99.48 0.71 -8.68 15 13 H -0.27 -9.81 7.11 99.48 0.71 -9.10 15 14 H -0.26 -9.75 7.11 99.48 0.71 -9.05 15 15 C -0.22 -10.64 5.90 -19.68 -0.12 -10.75 15 16 C -0.08 -3.21 9.38 71.24 0.67 -2.54 15 17 C -0.08 -3.51 9.35 22.26 0.21 -3.30 15 18 H 0.12 3.10 8.06 -2.91 -0.02 3.08 15 19 H 0.08 2.94 6.01 -2.91 -0.02 2.92 15 20 H 0.12 3.81 8.06 -2.91 -0.02 3.79 15 21 H 0.10 4.67 6.13 -2.91 -0.02 4.65 15 22 H 0.10 5.58 6.23 -2.91 -0.02 5.56 15 23 H 0.29 13.76 8.30 -92.70 -0.77 12.99 15 24 H 0.05 2.05 8.14 -2.39 -0.02 2.03 15 25 H 0.06 2.18 8.08 -2.39 -0.02 2.16 15 26 H 0.05 2.14 6.79 -2.39 -0.02 2.12 15 27 H 0.12 4.53 8.06 -2.91 -0.02 4.50 15 Total: -1.00 -58.08 233.95 6.15 -51.93 By element: Atomic # 1 Polarization: 20.09 SS G_CDS: 1.15 Total: 21.24 kcal Atomic # 6 Polarization: -72.62 SS G_CDS: 2.73 Total: -69.89 kcal Atomic # 7 Polarization: -43.18 SS G_CDS: 0.24 Total: -42.94 kcal Atomic # 14 Polarization: 37.63 SS G_CDS: 2.03 Total: 39.66 kcal Total: -58.08 6.15 -51.93 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240832046.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.918 kcal (2) G-P(sol) polarization free energy of solvation -58.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.928 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds