Wall clock time and date at job start Sun Mar 29 2020 21:54:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32578 * 1 3 3 C 1.50694 * 119.99848 * 2 1 4 4 C 1.47805 * 119.99817 * 180.02562 * 2 1 3 5 5 C 1.40232 * 120.84131 * 244.97719 * 4 2 1 6 6 C 1.38444 * 119.40214 * 180.02562 * 5 4 2 7 7 N 1.31500 * 121.17091 * 0.02562 * 6 5 4 8 8 C 1.33655 * 121.83885 * 359.68556 * 7 6 5 9 9 C 1.41433 * 119.76877 * 180.30730 * 8 7 6 10 10 H 1.08004 * 119.99939 * 180.26539 * 9 8 7 11 11 C 1.40033 * 119.99807 * 0.27157 * 9 8 7 12 12 N 1.30735 * 120.00509 * 359.97438 * 11 9 8 13 13 Si 1.86807 * 119.99817 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.46990 * 89.99672 * 13 11 9 15 15 H 1.48498 * 109.46822 * 209.99586 * 13 11 9 16 16 H 1.48497 * 109.47277 * 329.99803 * 13 11 9 17 17 C 1.39523 * 120.84413 * 64.99865 * 4 2 1 18 18 H 1.08004 * 120.00605 * 179.97438 * 1 2 3 19 19 H 1.07997 * 119.99895 * 359.97438 * 1 2 3 20 20 H 1.09002 * 109.47374 * 269.99912 * 3 2 1 21 21 H 1.08997 * 109.47709 * 30.00238 * 3 2 1 22 22 H 1.09002 * 109.46889 * 150.00311 * 3 2 1 23 23 H 1.08000 * 120.29432 * 359.97438 * 5 4 2 24 24 H 1.07997 * 119.41780 * 179.97438 * 6 5 4 25 25 H 0.96999 * 120.00344 * 180.02562 * 12 11 9 26 26 H 1.08002 * 120.59217 * 359.95050 * 17 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3258 0.0000 0.0000 3 6 2.0792 1.3051 0.0000 4 6 2.0648 -1.2801 -0.0006 5 6 2.8653 -1.6485 1.0903 6 6 3.5449 -2.8542 1.0580 7 7 3.4535 -3.6596 0.0225 8 6 2.7003 -3.3592 -1.0400 9 6 2.6286 -4.2608 -2.1274 10 1 2.0246 -4.0198 -2.9897 11 6 3.3406 -5.4658 -2.0858 12 7 4.0721 -5.7574 -1.0422 13 14 3.2453 -6.6570 -3.5217 14 1 4.3200 -6.3431 -4.4974 15 1 3.4178 -8.0457 -3.0250 16 1 1.9225 -6.5289 -4.1842 17 6 1.9840 -2.1522 -1.0866 18 1 -0.5401 -0.9353 -0.0004 19 1 -0.5400 0.9353 0.0004 20 1 2.2609 1.6198 -1.0277 21 1 1.4902 2.0647 0.5138 22 1 3.0317 1.1747 0.5138 23 1 2.9514 -0.9972 1.9474 24 1 4.1618 -3.1381 1.8978 25 1 4.5656 -6.5919 -1.0137 26 1 1.3780 -1.9054 -1.9458 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240836331.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:07 Heat of formation + Delta-G solvation = 38.664761 kcal Electronic energy + Delta-G solvation = -10854.362982 eV Core-core repulsion = 8897.936130 eV Total energy + Delta-G solvation = -1956.426852 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 189.085 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.22260 -35.03236 -33.33842 -29.97221 -29.54094 -26.81011 -25.57394 -22.27921 -21.20046 -18.75427 -16.67282 -15.49636 -14.72412 -14.29340 -14.00892 -13.47159 -13.13340 -12.82069 -12.36002 -11.96204 -11.48077 -11.20881 -11.17056 -10.79743 -10.68184 -10.34668 -9.93904 -9.35906 -8.72558 -7.86302 -7.62492 -7.53855 -6.37816 -4.50908 2.45115 2.78203 3.09461 3.11050 3.12888 3.23410 3.95977 4.76204 5.38146 5.53322 5.85322 5.92512 5.98907 6.11371 6.24431 6.30245 6.50769 6.75168 6.87924 7.00061 7.13486 7.30177 7.37994 7.57812 7.74490 8.04566 8.24550 8.67897 8.94119 10.14123 10.34188 Molecular weight = 189.08amu Principal moments of inertia in cm(-1) A = 0.061195 B = 0.010229 C = 0.009176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 457.446937 B = 2736.688671 C = 3050.776660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.067 4.067 3 C -0.112 4.112 4 C -0.004 4.004 5 C -0.305 4.305 6 C 0.123 3.877 7 N -0.486 5.486 8 C 0.255 3.745 9 C -0.434 4.434 10 H 0.083 0.917 11 C 0.069 3.931 12 N -0.717 5.717 13 Si 0.907 3.093 14 H -0.269 1.269 15 H -0.276 1.276 16 H -0.262 1.262 17 C -0.258 4.258 18 H 0.096 0.904 19 H 0.093 0.907 20 H 0.065 0.935 21 H 0.057 0.943 22 H 0.064 0.936 23 H 0.093 0.907 24 H 0.118 0.882 25 H 0.272 0.728 26 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.368 5.237 0.108 5.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.067 4.067 3 C -0.169 4.169 4 C -0.010 4.010 5 C -0.329 4.329 6 C -0.042 4.042 7 N -0.199 5.199 8 C 0.131 3.869 9 C -0.466 4.466 10 H 0.101 0.899 11 C -0.156 4.156 12 N -0.339 5.339 13 Si 0.731 3.269 14 H -0.194 1.194 15 H -0.201 1.201 16 H -0.186 1.186 17 C -0.281 4.281 18 H 0.115 0.885 19 H 0.111 0.889 20 H 0.084 0.916 21 H 0.076 0.924 22 H 0.083 0.917 23 H 0.112 0.888 24 H 0.136 0.864 25 H 0.083 0.917 26 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -1.774 4.262 0.162 4.620 hybrid contribution -0.507 0.298 -0.541 0.799 sum -2.281 4.560 -0.379 5.113 Atomic orbital electron populations 1.23927 0.94772 1.01140 1.04491 1.20662 0.94471 0.93920 0.97617 1.20809 1.00288 0.94018 1.01779 1.18773 0.95511 0.92122 0.94640 1.21300 1.09641 1.01692 1.00245 1.22436 0.95141 0.90268 0.96353 1.68716 1.20102 1.30808 1.00231 1.18551 0.87579 0.89544 0.91272 1.19616 1.24376 1.00780 1.01784 0.89905 1.26065 0.94140 0.98723 0.96639 1.70137 1.17094 1.20632 1.25992 0.86341 0.79809 0.79295 0.81444 1.19404 1.20116 1.18555 1.21861 1.08961 0.98058 0.99185 0.88521 0.88881 0.91641 0.92359 0.91663 0.88846 0.86403 0.91656 0.88298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.50 13.96 28.83 0.40 -3.10 15 2 C -0.07 -1.26 5.50 -102.62 -0.56 -1.82 15 3 C -0.11 -1.72 10.03 36.00 0.36 -1.36 15 4 C 0.00 -0.10 5.33 -104.76 -0.56 -0.66 15 5 C -0.31 -7.07 9.85 -38.76 -0.38 -7.46 15 6 C 0.12 3.07 11.16 -17.62 -0.20 2.88 15 7 N -0.49 -13.78 7.84 -11.22 -0.09 -13.86 15 8 C 0.26 7.18 6.55 -85.03 -0.56 6.63 15 9 C -0.43 -11.89 9.14 -37.69 -0.34 -12.24 15 10 H 0.08 2.12 7.85 -52.48 -0.41 1.71 15 11 C 0.07 1.80 5.50 -17.35 -0.10 1.70 15 12 N -0.72 -19.48 11.46 55.55 0.64 -18.84 15 13 Si 0.91 18.83 29.56 -169.99 -5.02 13.81 15 14 H -0.27 -5.49 7.11 56.52 0.40 -5.09 15 15 H -0.28 -5.60 7.11 56.52 0.40 -5.19 15 16 H -0.26 -5.33 7.11 56.52 0.40 -4.93 15 17 C -0.26 -6.55 9.55 -38.28 -0.37 -6.92 15 18 H 0.10 1.72 8.05 -52.48 -0.42 1.29 15 19 H 0.09 1.30 8.05 -52.49 -0.42 0.87 15 20 H 0.06 0.94 8.14 -51.93 -0.42 0.52 15 21 H 0.06 0.74 8.07 -51.93 -0.42 0.33 15 22 H 0.06 1.01 8.07 -51.93 -0.42 0.60 15 23 H 0.09 1.92 8.06 -52.49 -0.42 1.50 15 24 H 0.12 2.61 8.06 -52.49 -0.42 2.18 15 25 H 0.27 6.67 8.29 -40.82 -0.34 6.33 15 26 H 0.10 2.37 8.06 -52.49 -0.42 1.95 15 LS Contribution 237.45 15.07 3.58 3.58 Total: -1.00 -29.47 237.45 -6.12 -35.59 By element: Atomic # 1 Polarization: 4.99 SS G_CDS: -2.92 Total: 2.07 kcal Atomic # 6 Polarization: -20.04 SS G_CDS: -2.30 Total: -22.34 kcal Atomic # 7 Polarization: -33.25 SS G_CDS: 0.55 Total: -32.70 kcal Atomic # 14 Polarization: 18.83 SS G_CDS: -5.02 Total: 13.81 kcal Total LS contribution 3.58 Total: 3.58 kcal Total: -29.47 -6.12 -35.59 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240836331.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.256 kcal (2) G-P(sol) polarization free energy of solvation -29.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.591 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds