Wall clock time and date at job start Sun Mar 29 2020 21:30:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.46481 * 2 1 4 4 C 1.53044 * 109.46556 * 240.02265 * 2 1 3 5 5 C 1.53116 * 109.27838 * 180.80840 * 4 2 1 6 6 H 1.08995 * 109.51895 * 177.62094 * 5 4 2 7 7 N 1.46500 * 109.51900 * 297.74346 * 5 4 2 8 8 C 1.36943 * 119.99878 * 204.87417 * 7 5 4 9 9 H 1.07996 * 119.99698 * 0.02562 * 8 7 5 10 10 C 1.38809 * 119.99902 * 179.97438 * 8 7 5 11 11 N 1.31620 * 120.00319 * 0.02562 * 10 8 7 12 12 Si 1.86798 * 120.00011 * 180.02562 * 10 8 7 13 13 H 1.48506 * 109.47297 * 59.99967 * 12 10 8 14 14 H 1.48503 * 109.47261 * 300.00148 * 12 10 8 15 15 H 1.48500 * 109.47454 * 180.02562 * 12 10 8 16 16 C 1.53109 * 109.21776 * 57.68135 * 5 4 2 17 17 C 1.53177 * 109.21089 * 302.37795 * 16 5 4 18 18 N 1.46843 * 109.46383 * 119.96766 * 2 1 3 19 19 H 1.08997 * 109.46939 * 179.97438 * 1 2 3 20 20 H 1.08997 * 109.47372 * 299.98477 * 1 2 3 21 21 H 1.09004 * 109.46986 * 59.98005 * 1 2 3 22 22 H 1.08999 * 109.50277 * 60.85724 * 4 2 1 23 23 H 1.09002 * 109.53174 * 300.76462 * 4 2 1 24 24 H 0.97000 * 120.00415 * 24.87366 * 7 5 4 25 25 H 0.97001 * 119.99542 * 359.97438 * 11 10 8 26 26 H 1.09002 * 109.50447 * 62.25168 * 16 5 4 27 27 H 1.08997 * 109.50587 * 182.37430 * 16 5 4 28 28 H 1.09008 * 109.43892 * 299.11639 * 17 16 5 29 29 H 1.08997 * 109.43960 * 179.16126 * 17 16 5 30 30 H 1.00894 * 110.99945 * 57.65905 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7210 -1.2499 5 6 3.5710 -0.7362 -1.2354 6 1 3.9379 -1.2855 -2.1024 7 7 4.0746 0.6389 -1.2781 8 6 5.3248 0.8951 -1.7747 9 1 5.9393 0.0835 -2.1352 10 6 5.8017 2.1980 -1.8156 11 7 5.0526 3.1872 -1.3767 12 14 7.5069 2.5476 -2.4936 13 1 7.5807 2.0941 -3.9058 14 1 8.5192 1.8202 -1.6866 15 1 7.7766 4.0064 -2.4270 16 6 4.0561 -1.4192 0.0461 17 6 3.4864 -0.6775 1.2592 18 7 2.0193 -0.6916 1.1994 19 1 -0.3633 -1.0276 -0.0005 20 1 -0.3634 0.5136 0.8901 21 1 -0.3633 0.5142 -0.8898 22 1 1.6895 -0.1984 -2.1399 23 1 1.6660 -1.7448 -1.2582 24 1 3.5224 1.3679 -0.9547 25 1 4.1670 3.0057 -1.0250 26 1 3.7138 -2.4540 0.0590 27 1 5.1452 -1.3951 0.0815 28 1 3.8403 0.3535 1.2531 29 1 3.8174 -1.1697 2.1737 30 1 1.6646 -1.6352 1.2427 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001246153564.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:30:51 Heat of formation + Delta-G solvation = -22.888961 kcal Electronic energy + Delta-G solvation = -11802.051405 eV Core-core repulsion = 9823.821178 eV Total energy + Delta-G solvation = -1978.230227 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.29395 -36.29405 -33.66946 -32.97734 -30.06557 -27.92459 -25.56928 -24.19439 -22.48395 -20.77639 -19.31699 -17.21212 -16.31583 -16.06032 -15.72887 -15.52186 -15.10959 -14.55303 -13.94951 -13.42567 -13.05650 -12.90552 -12.68963 -12.64017 -12.22715 -11.95201 -11.89313 -11.67870 -11.56333 -11.21417 -10.92995 -9.32897 -9.08180 -8.40542 -5.33136 1.55220 1.65340 1.81786 2.69550 3.30891 3.38370 3.69224 3.93335 3.99770 4.09934 4.20264 4.38969 4.49376 4.67808 4.76193 4.85029 4.90202 4.98763 5.06968 5.20797 5.28192 5.31906 5.33867 5.58937 6.07732 6.47494 6.60187 7.09117 8.00041 8.11913 9.11104 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.059502 B = 0.011554 C = 0.010932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 470.457370 B = 2422.753480 C = 2560.733000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.085 3.915 3 H 0.043 0.957 4 C -0.145 4.145 5 C 0.167 3.833 6 H 0.033 0.967 7 N -0.743 5.743 8 C -0.328 4.328 9 H 0.062 0.938 10 C -0.106 4.106 11 N -0.975 5.975 12 Si 1.127 2.873 13 H -0.278 1.278 14 H -0.279 1.279 15 H -0.293 1.293 16 C -0.161 4.161 17 C 0.072 3.928 18 N -0.674 5.674 19 H 0.073 0.927 20 H 0.062 0.938 21 H 0.061 0.939 22 H 0.055 0.945 23 H 0.089 0.911 24 H 0.359 0.641 25 H 0.241 0.759 26 H 0.077 0.923 27 H 0.041 0.959 28 H 0.037 0.963 29 H 0.083 0.917 30 H 0.348 0.652 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.596 -10.145 2.630 12.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.025 4.025 3 H 0.061 0.939 4 C -0.184 4.184 5 C 0.059 3.941 6 H 0.051 0.949 7 N -0.386 5.386 8 C -0.459 4.459 9 H 0.080 0.920 10 C -0.297 4.297 11 N -0.624 5.624 12 Si 0.952 3.048 13 H -0.204 1.204 14 H -0.205 1.205 15 H -0.219 1.219 16 C -0.203 4.203 17 C -0.058 4.058 18 N -0.304 5.304 19 H 0.092 0.908 20 H 0.081 0.919 21 H 0.080 0.920 22 H 0.074 0.926 23 H 0.107 0.893 24 H 0.192 0.808 25 H 0.052 0.948 26 H 0.096 0.904 27 H 0.060 0.940 28 H 0.055 0.945 29 H 0.101 0.899 30 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -5.437 -8.595 2.634 10.506 hybrid contribution -0.790 -1.328 -0.380 1.591 sum -6.226 -9.923 2.253 11.930 Atomic orbital electron populations 1.21724 0.92216 1.02985 1.02153 1.21434 0.96414 0.96859 0.87787 0.93859 1.22444 0.94825 1.01868 0.99307 1.20446 0.93195 0.85244 0.95253 0.94885 1.42642 1.16378 1.03617 1.75956 1.20367 0.94133 0.95021 1.36413 0.91962 1.27166 1.09052 0.91507 1.02003 1.70998 1.11139 1.33247 1.46986 0.82636 0.70762 0.75451 0.75970 1.20431 1.20498 1.21883 1.22699 1.00383 0.99347 0.97862 1.21740 0.87597 0.99509 0.96944 1.60713 1.08158 1.22519 1.38992 0.90819 0.91937 0.92014 0.92633 0.89256 0.80795 0.94833 0.90415 0.94032 0.94461 0.89871 0.83354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.21 9.47 71.98 0.68 -2.53 16 2 C 0.09 2.70 2.87 44.94 0.13 2.83 16 3 H 0.04 1.72 6.64 -2.39 -0.02 1.70 16 4 C -0.14 -4.70 5.02 30.65 0.15 -4.55 16 5 C 0.17 6.79 3.12 45.07 0.14 6.93 16 6 H 0.03 1.41 8.08 -2.39 -0.02 1.39 16 7 N -0.74 -38.24 4.39 -322.59 -1.42 -39.66 16 8 C -0.33 -18.87 9.93 84.03 0.83 -18.04 16 9 H 0.06 3.52 7.83 -2.91 -0.02 3.49 16 10 C -0.11 -6.32 5.50 84.86 0.47 -5.86 16 11 N -0.98 -62.64 13.70 21.65 0.30 -62.34 16 12 Si 1.13 53.19 29.92 68.60 2.05 55.24 16 13 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 14 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 15 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 16 C -0.16 -5.73 5.77 30.69 0.18 -5.56 16 17 C 0.07 2.48 6.41 86.37 0.55 3.04 16 18 N -0.67 -19.99 6.50 -491.43 -3.20 -23.19 16 19 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 20 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 21 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 22 H 0.05 1.91 8.14 -2.39 -0.02 1.90 16 23 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 24 H 0.36 19.50 5.04 -92.71 -0.47 19.04 16 25 H 0.24 15.56 6.77 -92.71 -0.63 14.93 16 26 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 27 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 28 H 0.04 1.61 7.69 -2.38 -0.02 1.60 16 29 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 30 H 0.35 8.32 8.79 -89.70 -0.79 7.53 16 Total: -1.00 -66.48 239.88 0.88 -65.60 By element: Atomic # 1 Polarization: 28.08 SS G_CDS: 0.01 Total: 28.08 kcal Atomic # 6 Polarization: -26.87 SS G_CDS: 3.14 Total: -23.74 kcal Atomic # 7 Polarization: -120.87 SS G_CDS: -4.31 Total: -125.19 kcal Atomic # 14 Polarization: 53.19 SS G_CDS: 2.05 Total: 55.24 kcal Total: -66.48 0.88 -65.60 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246153564.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.708 kcal (2) G-P(sol) polarization free energy of solvation -66.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds