Wall clock time and date at job start Sun Mar 29 2020 21:45:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.43208 * 179.97438 * 2 1 4 4 C 1.39551 * 120.14078 * 14.74860 * 3 2 1 5 5 C 1.37955 * 119.85448 * 179.97438 * 4 3 2 6 6 C 1.38369 * 120.14316 * 359.73011 * 5 4 3 7 7 C 1.38320 * 120.28160 * 0.54738 * 6 5 4 8 8 C 1.50700 * 119.92645 * 179.72865 * 7 6 5 9 9 C 1.50706 * 109.47062 * 269.72084 * 8 7 6 10 10 H 1.07998 * 119.99503 * 0.02562 * 9 8 7 11 11 C 1.37871 * 120.00434 * 179.97438 * 9 8 7 12 12 N 1.31516 * 119.99826 * 359.72891 * 11 9 8 13 13 Si 1.86800 * 120.00406 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47364 * 179.72558 * 13 11 9 15 15 H 1.48508 * 109.46883 * 299.72681 * 13 11 9 16 16 H 1.48497 * 109.46870 * 59.72491 * 13 11 9 17 17 C 1.37997 * 120.14320 * 359.44881 * 7 6 5 18 18 H 4.52075 * 14.02103 * 359.97438 * 4 2 1 19 19 H 1.07996 * 120.07714 * 359.95544 * 4 3 2 20 20 H 1.08006 * 119.92628 * 179.97438 * 5 4 3 21 21 H 1.07998 * 119.85866 * 180.27141 * 6 5 4 22 22 H 1.09004 * 109.47406 * 149.72790 * 8 7 6 23 23 H 1.08993 * 109.47274 * 29.72416 * 8 7 6 24 24 H 0.97000 * 120.00236 * 0.27947 * 12 11 9 25 25 H 1.08006 * 120.07364 * 180.25120 * 17 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3073 -1.1661 -0.3072 5 6 4.6868 -1.1587 -0.3060 6 6 5.3751 0.0037 -0.0065 7 6 4.6860 1.1619 0.3045 8 6 5.4437 2.4218 0.6354 9 6 5.6970 2.4804 2.1199 10 1 5.3448 1.6847 2.7595 11 6 6.3792 3.5492 2.6613 12 7 6.8136 4.5151 1.8815 13 14 6.6937 3.6215 4.5012 14 1 7.4466 4.8595 4.8264 15 1 5.3970 3.6261 5.2252 16 1 7.4872 2.4364 4.9146 17 6 3.3060 1.1678 0.3067 18 1 -1.0500 -0.0011 0.0002 19 1 2.7713 -2.0730 -0.5452 20 1 5.2307 -2.0611 -0.5432 21 1 6.4551 0.0054 -0.0111 22 1 4.8569 3.2890 0.3325 23 1 6.3954 2.4236 0.1041 24 1 6.6505 4.4775 0.9260 25 1 2.7690 2.0739 0.5457 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250056491.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:17 Heat of formation + Delta-G solvation = 40.378137 kcal Electronic energy + Delta-G solvation = -10056.434378 eV Core-core repulsion = 8192.819214 eV Total energy + Delta-G solvation = -1863.615165 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 186.074 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.28938 -36.07052 -34.66008 -32.85962 -31.15887 -28.60552 -25.29837 -24.23482 -22.51703 -19.57912 -18.77190 -17.33047 -16.27976 -16.21416 -15.64874 -15.32397 -14.56372 -14.21401 -13.82081 -13.51957 -13.05353 -12.55595 -12.19751 -12.11839 -12.03006 -11.89805 -11.34164 -10.99108 -10.60843 -9.70679 -9.39852 -8.70710 -6.45270 0.00664 0.47853 1.51107 1.59260 1.77497 1.79531 2.07660 2.54130 3.05908 3.10349 3.37494 4.00710 4.04729 4.21223 4.45816 4.57336 4.67346 4.95537 5.02978 5.13642 5.20530 5.47239 5.50266 5.84832 5.86225 6.04266 6.10673 6.50391 6.57230 7.35026 8.66587 Molecular weight = 186.07amu Principal moments of inertia in cm(-1) A = 0.046461 B = 0.009488 C = 0.008806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.505651 B = 2950.273217 C = 3178.992944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.200 4.200 3 C -0.005 4.005 4 C -0.115 4.115 5 C -0.106 4.106 6 C -0.126 4.126 7 C -0.061 4.061 8 C 0.040 3.960 9 C -0.607 4.607 10 H 0.045 0.955 11 C -0.034 4.034 12 N -0.933 5.933 13 Si 1.119 2.881 14 H -0.280 1.280 15 H -0.271 1.271 16 H -0.267 1.267 17 C -0.119 4.119 18 H 0.268 0.732 19 H 0.152 0.848 20 H 0.162 0.838 21 H 0.122 0.878 22 H -0.003 1.003 23 H 0.006 0.994 24 H 0.256 0.744 25 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.254 -11.047 -3.001 14.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.200 4.200 3 C -0.005 4.005 4 C -0.133 4.133 5 C -0.123 4.123 6 C -0.144 4.144 7 C -0.062 4.062 8 C 0.003 3.997 9 C -0.644 4.644 10 H 0.063 0.937 11 C -0.231 4.231 12 N -0.570 5.570 13 Si 0.939 3.061 14 H -0.205 1.205 15 H -0.197 1.197 16 H -0.192 1.192 17 C -0.137 4.137 18 H 0.284 0.716 19 H 0.170 0.830 20 H 0.180 0.820 21 H 0.140 0.860 22 H 0.016 0.984 23 H 0.025 0.975 24 H 0.066 0.934 25 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -7.553 -10.142 -1.832 12.778 hybrid contribution -0.625 -0.342 -1.385 1.558 sum -8.178 -10.485 -3.217 13.680 Atomic orbital electron populations 1.25804 0.96338 0.97110 0.97254 1.20459 0.92608 1.03470 1.03429 1.16164 0.87623 0.94358 1.02379 1.21392 0.94326 0.97129 1.00407 1.21371 0.93972 0.98165 0.98821 1.21316 1.00422 0.92685 1.00003 1.20140 0.93727 0.96760 0.95527 1.18291 0.93802 0.90962 0.96631 1.22218 1.40167 1.09284 0.92780 0.93651 1.27463 0.92805 0.91805 1.11041 1.70916 1.45505 1.34389 1.06233 0.82924 0.77420 0.76919 0.68843 1.20475 1.19657 1.19222 1.21031 0.93615 0.97683 1.01397 0.71628 0.82985 0.82003 0.85958 0.98446 0.97546 0.93419 0.87726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.51 19.25 74.32 1.43 -2.08 15 2 C -0.20 -6.34 13.24 30.02 0.40 -5.95 15 3 C -0.01 -0.19 5.72 -21.41 -0.12 -0.31 15 4 C -0.11 -3.50 9.75 22.52 0.22 -3.28 15 5 C -0.11 -3.22 10.03 22.23 0.22 -2.99 15 6 C -0.13 -4.91 9.69 22.32 0.22 -4.69 15 7 C -0.06 -2.84 5.06 -19.90 -0.10 -2.94 15 8 C 0.04 2.19 4.41 29.10 0.13 2.32 15 9 C -0.61 -35.80 9.09 25.60 0.23 -35.56 15 10 H 0.05 2.67 7.74 -2.91 -0.02 2.64 15 11 C -0.03 -1.97 5.46 84.65 0.46 -1.51 15 12 N -0.93 -58.46 13.65 21.45 0.29 -58.17 15 13 Si 1.12 51.01 29.90 68.60 2.05 53.06 15 14 H -0.28 -12.59 7.11 99.48 0.71 -11.88 15 15 H -0.27 -11.59 7.11 99.48 0.71 -10.89 15 16 H -0.27 -11.27 7.11 99.48 0.71 -10.56 15 17 C -0.12 -5.13 9.40 22.52 0.21 -4.92 15 18 H 0.27 3.23 7.80 -4.42 -0.03 3.20 15 19 H 0.15 3.53 8.06 -2.91 -0.02 3.50 15 20 H 0.16 3.52 8.06 -2.91 -0.02 3.50 15 21 H 0.12 4.59 8.06 -2.91 -0.02 4.57 15 22 H 0.00 -0.16 7.96 -2.39 -0.02 -0.17 15 23 H 0.01 0.36 7.94 -2.39 -0.02 0.34 15 24 H 0.26 16.23 7.22 -92.71 -0.67 15.56 15 25 H 0.10 4.65 8.06 -2.91 -0.02 4.62 15 Total: -1.00 -69.50 236.89 6.91 -62.60 By element: Atomic # 1 Polarization: 3.17 SS G_CDS: 1.26 Total: 4.43 kcal Atomic # 6 Polarization: -65.21 SS G_CDS: 3.30 Total: -61.91 kcal Atomic # 7 Polarization: -58.46 SS G_CDS: 0.29 Total: -58.17 kcal Atomic # 14 Polarization: 51.01 SS G_CDS: 2.05 Total: 53.06 kcal Total: -69.50 6.91 -62.60 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250056491.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.975 kcal (2) G-P(sol) polarization free energy of solvation -69.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.597 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds