Wall clock time and date at job start Sun Mar 29 2020 21:48:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00168 * 2 1 4 4 H 1.48500 * 109.47383 * 270.00164 * 3 2 1 5 5 H 1.48506 * 109.47193 * 30.00222 * 3 2 1 6 6 H 1.48507 * 109.47027 * 149.99764 * 3 2 1 7 7 C 1.37882 * 119.99540 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99366 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00079 * 359.97438 * 7 2 1 10 10 N 1.46503 * 109.46885 * 180.02562 * 9 7 2 11 11 C 1.34778 * 120.00193 * 179.97438 * 10 9 7 12 12 O 1.21285 * 119.99578 * 0.02562 * 11 10 9 13 13 C 1.50695 * 120.00347 * 179.97438 * 11 10 9 14 14 H 1.08999 * 115.55804 * 34.31941 * 13 11 10 15 15 C 1.53002 * 117.50044 * 180.02562 * 13 11 10 16 16 C 1.53000 * 60.02940 * 107.50594 * 15 13 11 17 17 H 1.09008 * 117.49673 * 107.47884 * 16 15 13 18 18 F 1.39901 * 117.50046 * 252.49778 * 16 15 13 19 19 H 0.97000 * 119.99790 * 0.02562 * 1 2 3 20 20 H 1.08999 * 109.47042 * 60.00551 * 9 7 2 21 21 H 1.09001 * 109.47581 * 299.99853 * 9 7 2 22 22 H 0.97001 * 119.99897 * 0.02562 * 10 9 7 23 23 H 1.09002 * 117.49918 * 0.02562 * 15 13 11 24 24 H 1.09002 * 117.49754 * 215.00777 * 15 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4400 0.7001 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 7 2.2029 -3.6127 -0.0005 11 6 1.7536 -4.8834 0.0000 12 8 0.5612 -5.1050 0.0000 13 6 2.7328 -6.0289 -0.0006 14 1 3.6561 -5.8585 0.5531 15 6 2.1603 -7.4477 -0.0006 16 6 2.8155 -6.8879 -1.2648 17 1 3.7931 -7.2826 -1.5420 18 9 1.9763 -6.5500 -2.3319 19 1 -0.4850 0.8401 -0.0004 20 1 0.6240 -2.5567 -0.8903 21 1 0.6246 -2.5571 0.8897 22 1 3.1566 -3.4355 -0.0002 23 1 1.0754 -7.5527 -0.0006 24 1 2.7067 -8.2109 0.5538 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001520120249.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:48:14 Heat of formation + Delta-G solvation = -95.403721 kcal Electronic energy + Delta-G solvation = -11095.745614 eV Core-core repulsion = 8730.047370 eV Total energy + Delta-G solvation = -2365.698244 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 187.075 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -48.67980 -40.66674 -36.87031 -36.06722 -34.37606 -29.66016 -26.02234 -23.73190 -23.31759 -21.21748 -19.17620 -18.11468 -17.39935 -16.95215 -16.50441 -16.05246 -15.73179 -15.26363 -14.64098 -14.08347 -13.94071 -13.83356 -13.01651 -12.95507 -12.73365 -12.24920 -11.54930 -11.37308 -11.18156 -10.84864 -10.83128 -9.90068 -8.31745 -6.49349 1.41991 1.44728 1.47112 1.56431 2.27258 2.48253 2.68504 3.02973 3.20293 3.59348 3.80679 4.07924 4.24365 4.79223 4.84254 5.07078 5.15052 5.17455 5.44087 5.64233 5.80429 6.61161 6.83454 7.19793 7.42614 8.80819 Molecular weight = 187.07amu Principal moments of inertia in cm(-1) A = 0.079306 B = 0.008253 C = 0.008076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 352.976138 B = 3391.743746 C = 3466.100318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.001 3.999 3 Si 0.990 3.010 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.253 1.253 7 C -0.557 4.557 8 H 0.086 0.914 9 C 0.264 3.736 10 N -0.701 5.701 11 C 0.514 3.486 12 O -0.605 6.605 13 C -0.213 4.213 14 H 0.180 0.820 15 C -0.152 4.152 16 C 0.042 3.958 17 H 0.198 0.802 18 F -0.210 7.210 19 H 0.269 0.731 20 H -0.017 1.017 21 H -0.012 1.012 22 H 0.411 0.589 23 H 0.083 0.917 24 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.641 -11.142 0.064 16.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.198 4.198 3 Si 0.812 3.188 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.177 1.177 7 C -0.595 4.595 8 H 0.104 0.896 9 C 0.141 3.859 10 N -0.350 5.350 11 C 0.302 3.698 12 O -0.488 6.488 13 C -0.234 4.234 14 H 0.198 0.802 15 C -0.189 4.189 16 C 0.006 3.994 17 H 0.214 0.786 18 F -0.190 7.190 19 H 0.078 0.922 20 H 0.001 0.999 21 H 0.006 0.994 22 H 0.247 0.753 23 H 0.102 0.898 24 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 10.623 -11.142 0.038 15.395 hybrid contribution -0.196 1.187 -0.086 1.206 sum 10.428 -9.955 -0.048 14.417 Atomic orbital electron populations 1.70151 1.08410 1.28672 1.49831 1.26144 0.95830 1.04145 0.93707 0.85089 0.78485 0.76581 0.78639 1.19588 1.20840 1.17675 1.21613 0.94382 0.90387 1.53129 0.89566 1.18575 0.88791 0.84544 0.93940 1.46120 1.11320 1.05339 1.72215 1.20538 0.88950 0.84797 0.75513 1.90629 1.19610 1.85616 1.52941 1.23152 1.02789 0.91317 1.06101 0.80223 1.23794 1.02256 0.94036 0.98845 1.22870 0.96379 1.01468 0.78697 0.78576 1.92795 1.74661 1.93202 1.58389 0.92184 0.99937 0.99380 0.75318 0.89821 0.81503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.43 13.29 21.45 0.28 -57.14 14 2 C 0.00 0.07 5.46 84.66 0.46 0.53 14 3 Si 0.99 42.74 29.54 68.60 2.03 44.77 14 4 H -0.27 -11.30 7.11 99.48 0.71 -10.59 14 5 H -0.28 -12.07 7.11 99.48 0.71 -11.37 14 6 H -0.25 -10.08 7.11 99.48 0.71 -9.37 14 7 C -0.56 -31.04 9.28 25.60 0.24 -30.81 14 8 H 0.09 4.30 7.60 -2.91 -0.02 4.27 14 9 C 0.26 15.15 5.43 85.63 0.46 15.62 14 10 N -0.70 -31.12 5.55 -466.79 -2.59 -33.71 14 11 C 0.51 21.87 7.25 87.66 0.64 22.50 14 12 O -0.61 -32.27 16.26 -3.05 -0.05 -32.32 14 13 C -0.21 -5.51 6.19 -11.52 -0.07 -5.58 14 14 H 0.18 2.94 8.14 -2.39 -0.02 2.92 14 15 C -0.15 -3.28 10.03 30.60 0.31 -2.97 14 16 C 0.04 0.92 7.83 30.62 0.24 1.16 14 17 H 0.20 2.07 8.14 -2.38 -0.02 2.06 14 18 F -0.21 -7.17 17.14 44.97 0.77 -6.40 14 19 H 0.27 15.42 8.31 -92.71 -0.77 14.65 14 20 H -0.02 -1.13 8.14 -2.39 -0.02 -1.15 14 21 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 14 22 H 0.41 14.74 8.32 -92.71 -0.77 13.97 14 23 H 0.08 2.43 7.67 -2.39 -0.02 2.41 14 24 H 0.17 1.85 8.14 -2.39 -0.02 1.83 14 Total: -1.00 -78.64 227.16 3.16 -75.48 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: 0.44 Total: 8.87 kcal Atomic # 6 Polarization: -1.82 SS G_CDS: 2.28 Total: 0.46 kcal Atomic # 7 Polarization: -88.55 SS G_CDS: -2.30 Total: -90.85 kcal Atomic # 8 Polarization: -32.27 SS G_CDS: -0.05 Total: -32.32 kcal Atomic # 9 Polarization: -7.17 SS G_CDS: 0.77 Total: -6.40 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.77 kcal Total: -78.64 3.16 -75.48 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001520120249.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.923 kcal (2) G-P(sol) polarization free energy of solvation -78.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds