Wall clock time and date at job start Sun Mar 29 2020 21:48:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 120.00124 * 2 1 4 4 H 1.48501 * 109.47097 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47388 * 300.00002 * 3 2 1 6 6 H 1.48501 * 109.47101 * 60.00259 * 3 2 1 7 7 C 1.37882 * 120.00034 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00150 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99925 * 359.97438 * 7 2 1 10 10 N 1.46499 * 109.47254 * 180.02562 * 9 7 2 11 11 C 1.34777 * 119.99839 * 179.97438 * 10 9 7 12 12 O 1.21279 * 120.00025 * 0.02562 * 11 10 9 13 13 C 1.50696 * 119.99769 * 179.97438 * 11 10 9 14 14 H 1.09004 * 115.56587 * 34.31293 * 13 11 10 15 15 C 1.53000 * 117.50175 * 248.62488 * 13 11 10 16 16 C 1.52997 * 60.00347 * 252.51187 * 15 13 11 17 17 H 1.08999 * 117.49685 * 252.51237 * 16 15 13 18 18 F 1.39899 * 117.50367 * 107.48538 * 16 15 13 19 19 H 0.96998 * 119.99618 * 359.97438 * 1 2 3 20 20 H 1.09003 * 109.47026 * 59.99528 * 9 7 2 21 21 H 1.09002 * 109.47036 * 300.00427 * 9 7 2 22 22 H 0.96996 * 119.99814 * 359.97438 * 10 9 7 23 23 H 1.09002 * 117.49696 * 0.02562 * 15 13 11 24 24 H 1.09002 * 117.50343 * 145.02291 * 15 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8905 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2030 -3.6128 -0.0005 11 6 1.7537 -4.8834 0.0000 12 8 0.5613 -5.1050 0.0000 13 6 2.7329 -6.0288 -0.0006 14 1 3.6564 -5.8585 0.5530 15 6 2.8151 -6.8874 -1.2643 16 6 2.1604 -7.4478 -0.0001 17 1 2.7072 -8.2108 0.5539 18 9 0.7679 -7.5824 0.0010 19 1 -0.4849 0.8401 0.0004 20 1 0.6240 -2.5567 -0.8903 21 1 0.6247 -2.5571 0.8897 22 1 3.1566 -3.4355 -0.0009 23 1 2.1611 -6.6235 -2.0954 24 1 3.7925 -7.2820 -1.5421 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001520120255.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:48:17 Heat of formation + Delta-G solvation = -68.264535 kcal Electronic energy + Delta-G solvation = -11087.730798 eV Core-core repulsion = 8723.209398 eV Total energy + Delta-G solvation = -2364.521400 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 187.075 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -47.25757 -38.94841 -35.57743 -34.11327 -32.28796 -27.57300 -24.30336 -22.38959 -21.84106 -19.51784 -17.58852 -16.46437 -15.67655 -15.10029 -14.74333 -14.34485 -14.22073 -13.67798 -13.02455 -12.56154 -12.13505 -11.91877 -11.73804 -10.96798 -10.92275 -10.33650 -10.29916 -9.97238 -9.38137 -9.03147 -8.74035 -7.87577 -6.16716 -4.23788 3.00111 3.23380 3.30190 3.33369 3.75300 3.98286 4.26438 4.35664 4.71792 4.94372 5.08247 5.19354 5.44326 5.64635 5.90517 6.11666 7.30898 7.43949 7.51778 7.66677 7.96774 8.62642 8.78138 9.10913 9.42911 10.93571 Molecular weight = 187.07amu Principal moments of inertia in cm(-1) A = 0.095235 B = 0.008036 C = 0.007575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 293.940268 B = 3483.308871 C = 3695.625898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.063 3.937 3 Si 0.905 3.095 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.543 4.543 8 H 0.064 0.936 9 C 0.249 3.751 10 N -0.708 5.708 11 C 0.521 3.479 12 O -0.541 6.541 13 C -0.203 4.203 14 H 0.132 0.868 15 C -0.169 4.169 16 C 0.047 3.953 17 H 0.136 0.864 18 F -0.165 7.165 19 H 0.265 0.735 20 H 0.027 0.973 21 H 0.027 0.973 22 H 0.391 0.609 23 H 0.109 0.891 24 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.586 -10.548 -0.664 13.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.141 4.141 3 Si 0.732 3.268 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.581 4.581 8 H 0.082 0.918 9 C 0.128 3.872 10 N -0.356 5.356 11 C 0.305 3.695 12 O -0.419 6.419 13 C -0.225 4.225 14 H 0.150 0.850 15 C -0.207 4.207 16 C 0.010 3.990 17 H 0.153 0.847 18 F -0.145 7.145 19 H 0.075 0.925 20 H 0.045 0.955 21 H 0.045 0.955 22 H 0.223 0.777 23 H 0.127 0.873 24 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 7.495 -10.539 -0.661 12.949 hybrid contribution 0.857 1.126 0.027 1.415 sum 8.352 -9.413 -0.635 12.600 Atomic orbital electron populations 1.69991 1.06118 1.27205 1.48924 1.24969 0.94930 0.99497 0.94708 0.86344 0.79792 0.82911 0.77760 1.19642 1.20787 1.20776 1.21260 0.93300 0.90408 1.53155 0.91817 1.19134 0.88333 0.81920 0.97812 1.46394 1.11148 1.05827 1.72202 1.19371 0.88374 0.83654 0.78110 1.90728 1.16264 1.84654 1.50248 1.23090 1.02399 0.92776 1.04272 0.85042 1.23619 1.03358 1.01368 0.92364 1.21925 0.78202 0.96135 1.02750 0.84721 1.92893 1.28369 1.96321 1.96915 0.92482 0.95507 0.95465 0.77653 0.87273 0.86634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.37 13.29 55.43 0.74 -25.63 14 2 C 0.06 1.75 5.46 -17.82 -0.10 1.66 14 3 Si 0.90 20.95 29.54 -169.99 -5.02 15.93 14 4 H -0.27 -6.08 7.11 56.52 0.40 -5.68 14 5 H -0.28 -6.48 7.11 56.52 0.40 -6.08 14 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 14 7 C -0.54 -14.90 9.28 -34.44 -0.32 -15.22 14 8 H 0.06 1.63 7.60 -52.49 -0.40 1.23 14 9 C 0.25 6.74 5.43 -5.19 -0.03 6.72 14 10 N -0.71 -15.31 5.55 -61.47 -0.34 -15.65 14 11 C 0.52 10.89 7.61 -10.99 -0.08 10.81 14 12 O -0.54 -13.85 15.14 5.56 0.08 -13.76 14 13 C -0.20 -2.92 6.19 -91.77 -0.57 -3.49 14 14 H 0.13 1.43 8.14 -51.93 -0.42 1.00 14 15 C -0.17 -2.00 10.22 -26.73 -0.27 -2.27 14 16 C 0.05 0.61 7.82 -26.73 -0.21 0.41 14 17 H 0.14 1.19 8.14 -51.93 -0.42 0.76 14 18 F -0.16 -3.00 15.71 2.25 0.04 -2.97 14 19 H 0.27 7.38 8.31 -40.82 -0.34 7.04 14 20 H 0.03 0.80 8.14 -51.93 -0.42 0.38 14 21 H 0.03 0.82 8.14 -51.93 -0.42 0.39 14 22 H 0.39 7.15 8.32 -40.82 -0.34 6.81 14 23 H 0.11 1.48 8.14 -51.93 -0.42 1.05 14 24 H 0.12 0.92 8.14 -51.93 -0.42 0.50 14 LS Contribution 225.64 15.07 3.40 3.40 Total: -1.00 -33.64 225.64 -5.09 -38.74 By element: Atomic # 1 Polarization: 3.75 SS G_CDS: -2.41 Total: 1.34 kcal Atomic # 6 Polarization: 0.18 SS G_CDS: -1.58 Total: -1.40 kcal Atomic # 7 Polarization: -41.68 SS G_CDS: 0.40 Total: -41.28 kcal Atomic # 8 Polarization: -13.85 SS G_CDS: 0.08 Total: -13.76 kcal Atomic # 9 Polarization: -3.00 SS G_CDS: 0.04 Total: -2.97 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 3.40 Total: 3.40 kcal Total: -33.64 -5.09 -38.74 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001520120255.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.526 kcal (2) G-P(sol) polarization free energy of solvation -33.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds