Wall clock time and date at job start Sun Mar 29 2020 21:47:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36936 * 120.00097 * 2 1 4 4 H 1.07990 * 119.99920 * 334.94200 * 3 2 1 5 5 C 1.38810 * 119.99871 * 154.66329 * 3 2 1 6 6 N 1.31620 * 120.00085 * 150.90953 * 5 3 2 7 7 Si 1.86809 * 120.00173 * 330.91672 * 5 3 2 8 8 H 1.48498 * 109.47022 * 87.34194 * 7 5 3 9 9 H 1.48500 * 109.46618 * 207.34471 * 7 5 3 10 10 H 1.48500 * 109.46713 * 327.34076 * 7 5 3 11 11 C 1.46506 * 120.00049 * 180.02562 * 2 1 3 12 12 H 1.08996 * 110.28974 * 179.32607 * 11 2 1 13 13 C 1.54376 * 110.32244 * 301.45637 * 11 2 1 14 14 N 1.48563 * 104.59849 * 142.74781 * 13 11 2 15 15 C 1.48563 * 104.21819 * 320.51634 * 14 13 11 16 16 C 1.54264 * 110.32221 * 57.08703 * 11 2 1 17 17 H 1.09001 * 110.32110 * 122.20774 * 16 11 2 18 18 O 1.42901 * 110.32685 * 0.02562 * 16 11 2 19 19 H 1.09003 * 109.47053 * 84.68195 * 1 2 3 20 20 H 1.09000 * 109.47356 * 204.68086 * 1 2 3 21 21 H 1.08996 * 109.47000 * 324.68212 * 1 2 3 22 22 H 0.96999 * 120.00238 * 180.02562 * 6 5 3 23 23 H 1.09003 * 110.41313 * 261.52650 * 13 11 2 24 24 H 1.09005 * 110.41477 * 23.84878 * 13 11 2 25 25 H 1.00896 * 110.99619 * 80.06987 * 14 13 11 26 26 H 1.09003 * 110.40949 * 158.26032 * 15 14 13 27 27 H 1.08998 * 110.40824 * 280.58367 * 15 14 13 28 28 H 0.96692 * 114.00136 * 179.97438 * 18 16 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 1.6860 2.0771 -0.3961 5 6 3.4377 1.2437 0.5144 6 7 4.2952 2.1246 0.0444 7 14 3.9540 0.0710 1.8739 8 1 4.4562 -1.1914 1.2743 9 1 5.0295 0.6962 2.6847 10 1 2.7866 -0.2238 2.7430 11 6 2.1975 -1.2688 -0.0006 12 1 3.2718 -1.0850 -0.0125 13 6 1.8114 -2.1114 1.2340 14 7 1.7910 -3.5122 0.7397 15 6 1.1840 -3.4132 -0.6126 16 6 1.7847 -2.1252 -1.2154 17 1 2.6567 -2.3633 -1.8246 18 8 0.8050 -1.4386 -1.9969 19 1 -0.3633 0.0953 -1.0233 20 1 -0.3634 -0.9338 0.4291 21 1 -0.3633 0.8385 0.5941 22 1 5.1953 2.1647 0.4036 23 1 2.5569 -1.9967 2.0208 24 1 0.8264 -1.8210 1.5995 25 1 2.7246 -3.8917 0.6901 26 1 1.4572 -4.2788 -1.2162 27 1 0.0998 -3.3301 -0.5374 28 1 0.5079 -1.9296 -2.7750 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001573864432.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:31 Heat of formation + Delta-G solvation = -26.227204 kcal Electronic energy + Delta-G solvation = -12436.346811 eV Core-core repulsion = 10294.827254 eV Total energy + Delta-G solvation = -2141.519558 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.111 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.49531 -36.63678 -36.16187 -33.60435 -29.64166 -29.02262 -28.06046 -24.07573 -22.89349 -21.32588 -19.24728 -18.46420 -17.49008 -16.61814 -16.05126 -15.51931 -15.29046 -14.76698 -14.61779 -13.87540 -13.41528 -13.14219 -13.10070 -13.06273 -12.36545 -12.13846 -11.99321 -11.70589 -11.60281 -10.93458 -10.64475 -9.81459 -8.79052 -8.21874 -5.42578 1.20608 1.38041 1.47107 2.37295 2.86443 3.10494 3.44981 3.64748 3.81146 4.00627 4.07631 4.38286 4.45068 4.60503 4.71806 4.86094 4.93271 5.08174 5.12758 5.34576 5.53617 5.83882 6.09690 6.30903 6.90671 7.08564 7.66369 8.04389 8.97671 Molecular weight = 186.11amu Principal moments of inertia in cm(-1) A = 0.042681 B = 0.020149 C = 0.016430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.875384 B = 1389.310499 C = 1703.831639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.143 3.857 2 N -0.595 5.595 3 C -0.255 4.255 4 H 0.044 0.956 5 C -0.035 4.035 6 N -0.947 5.947 7 Si 0.934 3.066 8 H -0.267 1.267 9 H -0.312 1.312 10 H -0.256 1.256 11 C 0.118 3.882 12 H 0.062 0.938 13 C 0.017 3.983 14 N -0.659 5.659 15 C 0.022 3.978 16 C 0.056 3.944 17 H 0.056 0.944 18 O -0.551 6.551 19 H 0.028 0.972 20 H 0.051 0.949 21 H 0.024 0.976 22 H 0.262 0.738 23 H 0.062 0.938 24 H 0.083 0.917 25 H 0.344 0.656 26 H 0.105 0.895 27 H 0.088 0.912 28 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.349 -13.400 -0.910 14.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.001 4.001 2 N -0.318 5.318 3 C -0.385 4.385 4 H 0.062 0.938 5 C -0.230 4.230 6 N -0.593 5.593 7 Si 0.762 3.238 8 H -0.194 1.194 9 H -0.240 1.240 10 H -0.181 1.181 11 C 0.008 3.992 12 H 0.079 0.921 13 C -0.115 4.115 14 N -0.286 5.286 15 C -0.108 4.108 16 C -0.007 4.007 17 H 0.074 0.926 18 O -0.356 6.356 19 H 0.046 0.954 20 H 0.069 0.931 21 H 0.043 0.957 22 H 0.070 0.930 23 H 0.080 0.920 24 H 0.101 0.899 25 H 0.159 0.841 26 H 0.123 0.877 27 H 0.106 0.894 28 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -5.785 -13.118 -0.062 14.337 hybrid contribution 1.352 0.243 -0.404 1.431 sum -4.434 -12.874 -0.465 13.624 Atomic orbital electron populations 1.21008 0.81814 0.98736 0.98576 1.43779 1.02231 1.00220 1.85568 1.18832 0.97529 0.88894 1.33204 0.93841 1.25850 0.96151 0.99547 1.01426 1.70097 1.04985 1.41565 1.42620 0.86291 0.77317 0.78428 0.81721 1.19359 1.24042 1.18109 1.22324 0.96070 0.86723 0.94055 0.92052 1.23710 1.02273 0.88363 0.97132 1.63326 1.26022 1.17541 1.21761 1.23749 1.00949 0.96766 0.89289 1.23650 0.91403 0.92759 0.92893 0.92595 1.86825 1.59346 1.47498 1.41909 0.95374 0.93052 0.95739 0.92953 0.91956 0.89859 0.84056 0.87707 0.89361 0.77215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.14 5.99 8.89 127.77 1.14 7.13 15 2 N -0.60 -29.33 2.28 -697.78 -1.59 -30.92 15 3 C -0.25 -15.16 10.00 84.03 0.84 -14.32 15 4 H 0.04 2.86 8.06 -2.92 -0.02 2.83 15 5 C -0.03 -2.07 5.07 84.86 0.43 -1.64 15 6 N -0.95 -60.79 13.97 21.65 0.30 -60.49 15 7 Si 0.93 46.19 22.81 68.60 1.56 47.75 15 8 H -0.27 -12.08 6.25 99.48 0.62 -11.46 15 9 H -0.31 -15.73 7.11 99.48 0.71 -15.03 15 10 H -0.26 -12.10 6.35 99.48 0.63 -11.46 15 11 C 0.12 5.01 2.29 45.89 0.11 5.11 15 12 H 0.06 2.97 4.15 -2.39 -0.01 2.96 15 13 C 0.02 0.61 5.98 86.45 0.52 1.13 15 14 N -0.66 -18.97 7.63 -500.84 -3.82 -22.79 15 15 C 0.02 0.57 7.21 86.45 0.62 1.19 15 16 C 0.06 1.86 4.31 31.49 0.14 1.99 15 17 H 0.06 1.79 8.14 -2.39 -0.02 1.77 15 18 O -0.55 -18.52 9.84 -148.98 -1.47 -19.99 15 19 H 0.03 1.18 6.79 -2.39 -0.02 1.16 15 20 H 0.05 1.88 6.47 -2.39 -0.02 1.87 15 21 H 0.02 1.02 8.08 -2.39 -0.02 1.00 15 22 H 0.26 15.86 8.31 -92.71 -0.77 15.09 15 23 H 0.06 2.38 5.00 -2.39 -0.01 2.37 15 24 H 0.08 3.14 6.33 -2.38 -0.02 3.13 15 25 H 0.34 8.77 8.92 -89.70 -0.80 7.97 15 26 H 0.10 1.95 8.14 -2.39 -0.02 1.93 15 27 H 0.09 2.23 8.08 -2.39 -0.02 2.21 15 28 H 0.38 8.40 9.12 -74.06 -0.68 7.72 15 Total: -1.00 -70.11 215.58 -1.68 -71.80 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: -0.46 Total: 14.05 kcal Atomic # 6 Polarization: -3.20 SS G_CDS: 3.79 Total: 0.59 kcal Atomic # 7 Polarization: -109.09 SS G_CDS: -5.11 Total: -114.20 kcal Atomic # 8 Polarization: -18.52 SS G_CDS: -1.47 Total: -19.99 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 1.56 Total: 47.75 kcal Total: -70.11 -1.68 -71.80 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001573864432.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.568 kcal (2) G-P(sol) polarization free energy of solvation -70.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds