Wall clock time and date at job start Sun Mar 29 2020 21:55:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.27938 * 1 3 3 Si 1.86802 * 120.00234 * 2 1 4 4 H 1.48499 * 109.47429 * 240.00100 * 3 2 1 5 5 H 1.48505 * 109.46772 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47159 * 119.99610 * 3 2 1 7 7 C 1.50705 * 120.00086 * 179.97438 * 2 1 3 8 8 O 1.42657 * 109.50371 * 103.54875 * 7 2 1 9 Xx 1.42106 * 108.78440 * 240.01774 * 8 7 2 10 9 O 1.41999 * 126.47761 * 179.97438 * 9 8 7 11 10 C 1.57022 * 107.04126 * 0.25976 * 9 8 7 12 11 C 1.39094 * 132.97244 * 179.72191 * 11 9 8 13 12 C 1.38065 * 119.71173 * 180.02562 * 12 11 9 14 13 C 1.38392 * 120.05899 * 359.97438 * 13 12 11 15 14 C 1.38377 * 120.38024 * 359.50305 * 14 13 12 16 15 C 1.37984 * 120.06821 * 0.78800 * 15 14 13 17 16 H 0.96998 * 119.99995 * 359.97438 * 1 2 3 18 17 H 1.09003 * 109.49466 * 223.62184 * 7 2 1 19 18 H 0.96700 * 114.00257 * 0.02562 * 10 9 8 20 19 H 1.08005 * 120.14369 * 0.03702 * 12 11 9 21 20 H 1.08002 * 119.96605 * 179.97438 * 13 12 11 22 21 H 1.08001 * 119.81115 * 180.02562 * 14 13 12 23 22 H 1.07994 * 119.96292 * 179.89089 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2794 0.0000 0.0000 3 14 2.2135 1.6177 0.0000 4 1 3.0672 1.6964 -1.2125 5 1 1.2484 2.7465 0.0006 6 1 3.0671 1.6964 1.2125 7 6 2.0329 -1.3051 0.0006 8 8 2.5439 -1.5607 -1.3066 9 8 2.2545 -3.3925 -3.0374 10 6 1.0519 -3.3327 -0.6534 11 6 0.2559 -4.4690 -0.5536 12 6 -0.4843 -4.6876 0.5912 13 6 -0.4328 -3.7792 1.6340 14 6 0.3664 -2.6532 1.5424 15 6 1.1059 -2.4213 0.4008 16 1 -0.4850 0.8400 0.0004 17 1 2.8590 -1.2479 0.7095 18 1 2.8658 -2.8951 -3.5976 19 1 0.2172 -5.1773 -1.3680 20 1 -1.1041 -5.5683 0.6729 21 1 -1.0131 -3.9543 2.5278 22 1 0.4002 -1.9479 2.3595 There are 31 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 31 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000195770948.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:09 Heat of formation + Delta-G solvation = 177.889275 kcal Electronic energy + Delta-G solvation = -10219.653956 eV Core-core repulsion = 8136.627238 eV Total energy + Delta-G solvation = -2083.026718 eV No. of doubly occupied orbitals = 31 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 180.057 amu Computer time = 2.29 seconds Orbital eigenvalues (eV) -41.00798 -37.73657 -34.91839 -32.91882 -32.53761 -31.77068 -27.60905 -24.05984 -23.10975 -20.79056 -18.39149 -17.27743 -16.90212 -16.10644 -15.79897 -15.52649 -15.10124 -15.02632 -14.31214 -14.10773 -13.75174 -13.00934 -12.68464 -12.23295 -11.61653 -11.34781 -11.25626 -10.65331 -10.47665 -9.88643 -9.83795 -6.93360 -2.89601 -0.53353 -0.26242 0.70728 1.02484 1.36440 1.63451 1.94040 2.12784 2.85057 2.98663 3.40546 3.48893 3.73813 3.84684 4.19689 4.27954 4.50089 4.66000 4.87345 4.91163 5.02348 5.28710 5.38359 6.40949 6.75920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.629 5.629 2 C -0.026 4.026 3 Si 0.978 3.022 4 H -0.277 1.277 5 H -0.244 1.244 6 H -0.217 1.217 7 C 0.127 3.873 8 O -0.497 6.497 9 O -0.741 6.741 10 C 0.270 3.730 11 C -0.124 4.124 12 C -0.051 4.051 13 C -0.073 4.073 14 C -0.058 4.058 15 C -0.058 4.058 16 H 0.348 0.652 17 H 0.144 0.856 18 H 0.334 0.666 19 H 0.178 0.822 20 H 0.213 0.787 21 H 0.206 0.794 22 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.073 -2.402 11.445 13.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.247 5.247 2 C -0.275 4.275 3 Si 0.794 3.206 4 H -0.202 1.202 5 H -0.166 1.166 6 H -0.139 1.139 7 C 0.063 3.937 8 O -0.442 6.442 9 O -0.571 6.571 10 C 0.263 3.737 11 C -0.141 4.141 12 C -0.068 4.068 13 C -0.090 4.090 14 C -0.075 4.075 15 C -0.058 4.058 16 H 0.165 0.835 17 H 0.160 0.840 18 H 0.168 0.832 19 H 0.195 0.805 20 H 0.230 0.770 21 H 0.223 0.777 22 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -6.736 -2.805 11.667 13.761 hybrid contribution 1.262 1.219 -1.985 2.649 sum -5.475 -1.587 9.682 11.235 Atomic orbital electron populations 1.68156 1.10108 1.38129 1.08262 1.31245 0.97401 1.06627 0.92209 0.85108 0.80141 0.73258 0.82089 1.20172 1.16643 1.13893 1.20064 0.94024 0.87667 0.91905 1.95147 1.57362 1.66505 1.25160 1.93415 1.69024 1.49552 1.45147 1.30086 0.88322 0.99322 0.55976 1.22288 0.94240 0.95561 1.02001 1.21973 0.95964 1.02180 0.86689 1.22265 0.95265 0.90715 1.00759 1.21515 0.92691 0.99465 0.93843 1.22372 0.99461 0.93629 0.90387 0.83456 0.84006 0.83190 0.80474 0.77023 0.77727 0.78742 Number of geometries 1 Number of calculations of the screened coulomb radii 3 The total number of SCF iterations 261. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.63 -1.17 12.59 24.11 0.30 -0.86 14 2 C -0.03 -0.08 5.27 88.68 0.47 0.39 14 3 Si 0.98 1.05 29.57 68.60 2.03 3.07 14 4 H -0.28 -2.34 7.11 99.48 0.71 -1.63 14 5 H -0.24 -0.01 7.11 99.48 0.71 0.70 14 6 H -0.22 0.42 7.11 99.48 0.71 1.13 14 7 C 0.13 0.72 3.49 29.04 0.10 0.82 14 8 O -0.50 -9.61 14.61 -128.58 -1.88 -11.49 14 9 O -0.74 -20.87 18.54 -128.58 -2.38 -23.25 14 10 C 0.27 1.43 10.28 22.77 0.23 1.67 14 11 C -0.12 0.57 10.09 22.43 0.23 0.80 14 12 C -0.05 0.74 10.04 22.27 0.22 0.97 14 13 C -0.07 1.20 10.04 22.34 0.22 1.42 14 14 C -0.06 0.63 9.79 22.24 0.22 0.85 14 15 C -0.06 0.02 4.88 -19.69 -0.10 -0.08 14 16 H 0.35 -0.56 8.23 -92.71 -0.76 -1.32 14 17 H 0.14 -0.14 7.99 -2.39 -0.02 -0.16 14 18 H 0.33 8.37 9.30 -74.06 -0.69 7.68 14 19 H 0.18 -0.96 8.06 -2.91 -0.02 -0.98 14 20 H 0.21 -4.75 8.06 -2.91 -0.02 -4.78 14 21 H 0.21 -4.99 8.06 -2.91 -0.02 -5.01 14 22 H 0.20 -3.24 8.06 -2.91 -0.02 -3.26 14 Total: 0.00 -33.56 218.26 0.22 -33.33 By element: Atomic # 1 Polarization: -8.19 SS G_CDS: 0.56 Total: -7.64 kcal Atomic # 6 Polarization: 5.23 SS G_CDS: 1.60 Total: 6.83 kcal Atomic # 7 Polarization: -1.17 SS G_CDS: 0.30 Total: -0.86 kcal Atomic # 8 Polarization: -30.48 SS G_CDS: -4.26 Total: -34.74 kcal Atomic # 14 Polarization: 1.05 SS G_CDS: 2.03 Total: 3.07 kcal Total: -33.56 0.22 -33.33 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195770948.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 211.222 kcal (2) G-P(sol) polarization free energy of solvation -33.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 177.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.333 kcal (6) G-S(sol) free energy of system = (1) + (5) 177.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.29 seconds