Wall clock time and date at job start Sun Mar 29 2020 21:39:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35215 * 126.68420 * 2 1 4 4 C 1.42080 * 103.96056 * 179.97438 * 3 2 1 5 5 N 1.39221 * 126.90763 * 179.97438 * 4 3 2 6 6 C 1.34781 * 119.99776 * 359.97438 * 5 4 3 7 7 O 1.21704 * 120.00138 * 359.72889 * 6 5 4 8 8 C 1.46233 * 119.99845 * 179.72357 * 6 5 4 9 9 H 1.08001 * 120.00230 * 353.94242 * 8 6 5 10 10 C 1.40109 * 120.00015 * 173.93715 * 8 6 5 11 11 N 1.30648 * 119.99990 * 6.15106 * 10 8 6 12 12 Si 1.86804 * 120.00114 * 186.15626 * 10 8 6 13 13 H 1.48497 * 109.47258 * 94.98488 * 12 10 8 14 14 H 1.48505 * 109.46882 * 214.98577 * 12 10 8 15 15 H 1.48500 * 109.46942 * 334.97996 * 12 10 8 16 16 N 1.30801 * 106.18762 * 0.25801 * 4 3 2 17 17 O 1.20919 * 111.45587 * 359.53480 * 16 4 3 18 18 H 1.09002 * 109.47017 * 90.00618 * 1 2 3 19 19 H 1.08999 * 109.47343 * 210.00499 * 1 2 3 20 20 H 1.09005 * 109.46944 * 330.00911 * 1 2 3 21 21 H 1.08000 * 128.02209 * 359.93351 * 3 2 1 22 22 H 0.97003 * 120.00296 * 179.72352 * 5 4 3 23 23 H 0.96998 * 119.99634 * 179.97438 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3148 1.0843 0.0000 4 6 3.6253 0.5355 0.0006 5 7 4.8265 1.2394 0.0004 6 6 4.8178 2.5871 -0.0011 7 8 3.7599 3.1888 -0.0071 8 6 6.0794 3.3265 0.0048 9 1 7.0151 2.7972 0.1089 10 6 6.0745 4.7215 -0.1249 11 7 4.9421 5.3731 -0.1301 12 14 7.6870 5.6499 -0.2904 13 1 7.9852 5.8718 -1.7281 14 1 7.5771 6.9600 0.4003 15 1 8.7807 4.8561 0.3253 16 7 3.4764 -0.7640 -0.0047 17 8 2.3080 -1.0753 0.0007 18 1 -0.3633 -0.0001 -1.0277 19 1 -0.3634 -0.8899 0.5139 20 1 -0.3633 0.8901 0.5137 21 1 2.0299 2.1261 -0.0010 22 1 5.6697 0.7598 0.0049 23 1 4.9388 6.3390 -0.2194 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000000140920.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:35 Heat of formation + Delta-G solvation = -4.970811 kcal Electronic energy + Delta-G solvation = -11907.480969 eV Core-core repulsion = 9530.135401 eV Total energy + Delta-G solvation = -2377.345568 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 196.063 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -45.68321 -39.91090 -36.08358 -34.68943 -34.40357 -32.65603 -28.71350 -28.46606 -24.65914 -22.88011 -21.38985 -19.31711 -18.54990 -18.08500 -17.51750 -17.14661 -16.02253 -15.15477 -14.78234 -14.49719 -14.19515 -13.90886 -13.27759 -13.18445 -12.96047 -12.76084 -12.27986 -12.06783 -12.01822 -11.00265 -10.25143 -10.07130 -9.45574 -8.45898 -7.03311 0.57841 1.28252 1.40341 1.47678 1.57805 2.08401 2.31008 2.39457 2.48644 3.45932 3.58539 4.14261 4.26414 4.50893 4.77017 4.89820 5.04981 5.21330 5.30058 5.58692 5.91304 6.02528 6.69941 7.02247 7.54731 8.17055 8.48454 Molecular weight = 196.06amu Principal moments of inertia in cm(-1) A = 0.085619 B = 0.008742 C = 0.007973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 326.951927 B = 3201.987680 C = 3511.081356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C -0.013 4.013 3 C -0.265 4.265 4 C 0.249 3.751 5 N -0.650 5.650 6 C 0.532 3.468 7 O -0.594 6.594 8 C -0.558 4.558 9 H 0.096 0.904 10 C 0.032 3.968 11 N -0.807 5.807 12 Si 1.006 2.994 13 H -0.262 1.262 14 H -0.269 1.269 15 H -0.248 1.248 16 N -0.435 5.435 17 O 0.082 5.918 18 H 0.106 0.894 19 H 0.108 0.892 20 H 0.099 0.901 21 H 0.164 0.836 22 H 0.411 0.589 23 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.657 -5.760 -0.198 6.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.077 4.077 3 C -0.289 4.289 4 C 0.000 4.000 5 N -0.303 5.303 6 C 0.339 3.661 7 O -0.478 6.478 8 C -0.594 4.594 9 H 0.114 0.886 10 C -0.186 4.186 11 N -0.435 5.435 12 Si 0.825 3.175 13 H -0.186 1.186 14 H -0.193 1.193 15 H -0.171 1.171 16 N -0.159 5.159 17 O 0.028 5.972 18 H 0.124 0.876 19 H 0.127 0.873 20 H 0.117 0.883 21 H 0.182 0.818 22 H 0.246 0.754 23 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -3.712 -6.159 -0.211 7.194 hybrid contribution 0.790 1.053 -0.054 1.318 sum -2.922 -5.106 -0.265 5.888 Atomic orbital electron populations 1.20557 0.79902 1.06048 1.05643 1.25136 0.98067 0.84533 0.99978 1.22738 0.90473 1.02037 1.13645 1.21155 0.90537 0.88946 0.99357 1.43124 1.04484 1.07184 1.75461 1.18861 0.91618 0.78515 0.77059 1.90508 1.34015 1.67558 1.55753 1.21322 0.91864 0.92687 1.53529 0.88637 1.27019 1.02149 0.98291 0.91110 1.70115 1.29847 1.09564 1.33966 0.84871 0.76013 0.77246 0.79410 1.18638 1.19339 1.17143 1.73948 0.98219 1.12898 1.30877 1.84643 1.10356 1.32473 1.69775 0.87551 0.87325 0.88270 0.81810 0.75383 0.90819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.29 10.45 71.24 0.74 -0.54 14 2 C -0.01 -0.44 7.47 24.99 0.19 -0.26 14 3 C -0.27 -11.85 9.79 22.53 0.22 -11.63 14 4 C 0.25 11.86 8.17 134.20 1.10 12.95 14 5 N -0.65 -32.22 5.41 -313.49 -1.70 -33.92 14 6 C 0.53 30.71 7.70 86.32 0.66 31.38 14 7 O -0.59 -37.94 12.31 -4.36 -0.05 -38.00 14 8 C -0.56 -30.64 9.53 24.80 0.24 -30.40 14 9 H 0.10 4.67 7.86 -2.91 -0.02 4.65 14 10 C 0.03 1.68 5.50 85.32 0.47 2.15 14 11 N -0.81 -46.69 11.85 21.85 0.26 -46.43 14 12 Si 1.01 38.82 29.56 68.60 2.03 40.85 14 13 H -0.26 -9.69 7.11 99.48 0.71 -8.98 14 14 H -0.27 -9.94 7.11 99.48 0.71 -9.23 14 15 H -0.25 -8.93 7.11 99.48 0.71 -8.23 14 16 N -0.44 -18.69 12.11 -56.32 -0.68 -19.37 14 17 O 0.08 3.04 11.19 71.17 0.80 3.83 14 18 H 0.11 1.71 8.14 -2.39 -0.02 1.70 14 19 H 0.11 1.55 8.14 -2.39 -0.02 1.53 14 20 H 0.10 1.83 8.14 -2.38 -0.02 1.81 14 21 H 0.16 8.18 6.21 -2.91 -0.02 8.16 14 22 H 0.41 17.81 8.80 -92.71 -0.82 16.99 14 23 H 0.28 14.61 8.29 -92.71 -0.77 13.84 14 Total: -1.00 -71.85 217.93 4.71 -67.14 By element: Atomic # 1 Polarization: 21.81 SS G_CDS: 0.44 Total: 22.25 kcal Atomic # 6 Polarization: 0.03 SS G_CDS: 3.62 Total: 3.65 kcal Atomic # 7 Polarization: -97.60 SS G_CDS: -2.12 Total: -99.72 kcal Atomic # 8 Polarization: -34.91 SS G_CDS: 0.74 Total: -34.17 kcal Atomic # 14 Polarization: 38.82 SS G_CDS: 2.03 Total: 40.85 kcal Total: -71.85 4.71 -67.14 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000140920.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.170 kcal (2) G-P(sol) polarization free energy of solvation -71.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds